data_YMQ
# 
_chem_comp.id                                    YMQ 
_chem_comp.name                                  "9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H24 N2 O6 Ru2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2023-07-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        578.544 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PFV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMQ C12 C1  C  0 1 Y N N -40.612 -2.416  -20.260 4.634  -1.125 0.144  C12 YMQ 1  
YMQ C22 C2  C  0 1 N N N -38.350 -7.755  -11.893 -6.967 -2.255 0.642  C22 YMQ 2  
YMQ C13 C3  C  0 1 Y N N -40.133 -3.669  -19.995 3.384  -0.585 0.377  C13 YMQ 3  
YMQ C23 C4  C  0 1 N N N -41.991 0.075   -21.787 7.106  -2.112 -0.324 C23 YMQ 4  
YMQ C15 C5  C  0 1 Y N N -39.738 -7.539  -16.825 -2.285 -1.378 -0.683 C15 YMQ 5  
YMQ C16 C6  C  0 1 Y N N -38.559 -8.016  -16.268 -2.425 -2.758 -0.742 C16 YMQ 6  
YMQ C17 C7  C  0 1 Y N N -38.464 -8.108  -14.910 -3.636 -3.343 -0.425 C17 YMQ 7  
YMQ RU1 RU1 RU 0 0 N N N -40.020 -7.650  -21.259 1.065  1.036  0.667  RU1 YMQ 8  
YMQ RU2 RU2 RU 0 0 N N N -39.600 -9.045  -19.508 -1.108 1.103  -0.693 RU2 YMQ 9  
YMQ O1  O1  O  0 1 N N N -41.966 -8.282  -21.273 0.316  2.024  2.000  O1  YMQ 10 
YMQ O2  O2  O  0 1 N N N -41.573 -9.603  -19.518 -2.039 1.752  0.726  O2  YMQ 11 
YMQ O3  O3  O  0 1 N N N -39.576 -9.207  -22.521 1.992  1.834  -0.676 O3  YMQ 12 
YMQ O4  O4  O  0 1 N N N -39.198 -10.565 -20.823 -0.365 2.229  -1.914 O4  YMQ 13 
YMQ N2  N1  N  0 1 N N N -39.842 -7.480  -18.220 -1.061 -0.784 -1.009 N2  YMQ 14 
YMQ N1  N2  N  0 1 N N N -40.494 -6.154  -19.954 1.020  -0.875 0.780  N1  YMQ 15 
YMQ C1  C8  C  0 1 N N N -42.357 -9.075  -20.364 -1.109 2.044  1.788  C1  YMQ 16 
YMQ C7  C9  C  0 1 N N N -40.267 -6.319  -18.680 0.040  -1.366 -0.212 C7  YMQ 17 
YMQ C3  C10 C  0 1 N N N -39.297 -10.322 -22.055 1.061  2.233  -1.701 C3  YMQ 18 
YMQ C2  C11 C  0 1 N N N -43.810 -9.406  -20.374 -1.517 3.447  2.242  C2  YMQ 19 
YMQ C20 C12 C  0 1 Y N N -40.811 -7.115  -16.038 -3.362 -0.587 -0.305 C20 YMQ 20 
YMQ C9  C13 C  0 1 Y N N -42.205 -4.618  -20.730 2.449  -2.798 0.478  C9  YMQ 21 
YMQ C10 C14 C  0 1 Y N N -42.664 -3.351  -20.974 3.697  -3.336 0.234  C10 YMQ 22 
YMQ C8  C15 C  0 1 Y N N -40.955 -4.812  -20.271 2.287  -1.421 0.544  C8  YMQ 23 
YMQ C11 C16 C  0 1 Y N N -41.887 -2.233  -20.807 4.793  -2.501 0.072  C11 YMQ 24 
YMQ O7  O5  O  0 1 N N N -42.516 -0.975  -21.075 6.022  -3.031 -0.168 O7  YMQ 25 
YMQ C4  C17 C  0 1 N N N -39.065 -11.477 -22.971 1.462  3.677  -2.005 C4  YMQ 26 
YMQ C18 C18 C  0 1 Y N N -39.496 -7.683  -14.104 -4.711 -2.553 -0.048 C18 YMQ 27 
YMQ C19 C19 C  0 1 Y N N -40.658 -7.166  -14.637 -4.572 -1.174 0.012  C19 YMQ 28 
YMQ O8  O6  O  0 1 N N N -39.496 -7.729  -12.733 -5.903 -3.129 0.262  O8  YMQ 29 
YMQ H1  H1  H  0 1 N N N -39.997 -1.555  -20.044 5.486  -0.475 0.014  H1  YMQ 30 
YMQ H2  H2  H  0 1 N N N -38.667 -7.791  -10.840 -6.675 -1.691 1.528  H2  YMQ 31 
YMQ H3  H3  H  0 1 N N N -37.746 -8.645  -12.124 -7.180 -1.565 -0.174 H3  YMQ 32 
YMQ H4  H4  H  0 1 N N N -37.749 -6.849  -12.064 -7.859 -2.842 0.863  H4  YMQ 33 
YMQ H5  H5  H  0 1 N N N -39.144 -3.797  -19.581 3.259  0.486  0.429  H5  YMQ 34 
YMQ H6  H6  H  0 1 N N N -42.719 0.899   -21.816 6.902  -1.450 -1.166 H6  YMQ 35 
YMQ H7  H7  H  0 1 N N N -41.065 0.420   -21.303 7.214  -1.521 0.585  H7  YMQ 36 
YMQ H8  H8  H  0 1 N N N -41.768 -0.253  -22.813 8.026  -2.665 -0.511 H8  YMQ 37 
YMQ H9  H9  H  0 1 N N N -37.732 -8.309  -16.898 -1.588 -3.374 -1.036 H9  YMQ 38 
YMQ H10 H10 H  0 1 N N N -37.571 -8.518  -14.463 -3.745 -4.417 -0.471 H10 YMQ 39 
YMQ H11 H11 H  0 1 N N N -42.542 -8.229  -19.686 -1.499 1.472  2.630  H11 YMQ 40 
YMQ H12 H12 H  0 1 N N N -39.512 -5.572  -18.395 -0.421 -2.222 0.280  H12 YMQ 41 
YMQ H13 H13 H  0 1 N N N -41.212 -6.101  -18.161 0.653  -1.880 -0.952 H13 YMQ 42 
YMQ H14 H14 H  0 1 N N N -38.226 -10.073 -22.094 1.452  1.755  -2.599 H14 YMQ 43 
YMQ H15 H15 H  0 1 N N N -44.035 -10.096 -19.548 -0.997 4.190  1.638  H15 YMQ 44 
YMQ H16 H16 H  0 1 N N N -44.397 -8.484  -20.251 -2.593 3.569  2.122  H16 YMQ 45 
YMQ H17 H17 H  0 1 N N N -44.071 -9.882  -21.331 -1.251 3.580  3.291  H17 YMQ 46 
YMQ H18 H18 H  0 1 N N N -41.727 -6.760  -16.487 -3.254 0.486  -0.258 H18 YMQ 47 
YMQ H19 H19 H  0 1 N N N -42.850 -5.466  -20.907 1.597  -3.449 0.608  H19 YMQ 48 
YMQ H20 H20 H  0 1 N N N -43.682 -3.227  -21.313 3.822  -4.407 0.178  H20 YMQ 49 
YMQ H21 H21 H  0 1 N N N -38.832 -12.374 -22.379 2.496  3.702  -2.351 H21 YMQ 50 
YMQ H22 H22 H  0 1 N N N -39.970 -11.658 -23.569 0.810  4.080  -2.780 H22 YMQ 51 
YMQ H23 H23 H  0 1 N N N -38.222 -11.250 -23.641 1.367  4.279  -1.101 H23 YMQ 52 
YMQ H24 H24 H  0 1 N N N -41.442 -6.804  -13.989 -5.410 -0.559 0.306  H24 YMQ 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMQ C4  C3  SING N N 1  
YMQ O3  C3  SING N N 2  
YMQ O3  RU1 SING N N 3  
YMQ C3  O4  SING N N 4  
YMQ C23 O7  SING N N 5  
YMQ O1  RU1 SING N N 6  
YMQ O1  C1  SING N N 7  
YMQ RU1 N1  SING N N 8  
YMQ RU1 RU2 SING N N 9  
YMQ O7  C11 SING N N 10 
YMQ C10 C11 DOUB Y N 11 
YMQ C10 C9  SING Y N 12 
YMQ O4  RU2 SING N N 13 
YMQ C11 C12 SING Y N 14 
YMQ C9  C8  DOUB Y N 15 
YMQ C2  C1  SING N N 16 
YMQ C1  O2  SING N N 17 
YMQ C8  C13 SING Y N 18 
YMQ C8  N1  SING N N 19 
YMQ C12 C13 DOUB Y N 20 
YMQ N1  C7  SING N N 21 
YMQ O2  RU2 SING N N 22 
YMQ RU2 N2  SING N N 23 
YMQ C7  N2  SING N N 24 
YMQ N2  C15 SING N N 25 
YMQ C15 C16 DOUB Y N 26 
YMQ C15 C20 SING Y N 27 
YMQ C16 C17 SING Y N 28 
YMQ C20 C19 DOUB Y N 29 
YMQ C17 C18 DOUB Y N 30 
YMQ C19 C18 SING Y N 31 
YMQ C18 O8  SING N N 32 
YMQ O8  C22 SING N N 33 
YMQ C12 H1  SING N N 34 
YMQ C22 H2  SING N N 35 
YMQ C22 H3  SING N N 36 
YMQ C22 H4  SING N N 37 
YMQ C13 H5  SING N N 38 
YMQ C23 H6  SING N N 39 
YMQ C23 H7  SING N N 40 
YMQ C23 H8  SING N N 41 
YMQ C16 H9  SING N N 42 
YMQ C17 H10 SING N N 43 
YMQ C1  H11 SING N N 44 
YMQ C7  H12 SING N N 45 
YMQ C7  H13 SING N N 46 
YMQ C3  H14 SING N N 47 
YMQ C2  H15 SING N N 48 
YMQ C2  H16 SING N N 49 
YMQ C2  H17 SING N N 50 
YMQ C20 H18 SING N N 51 
YMQ C9  H19 SING N N 52 
YMQ C10 H20 SING N N 53 
YMQ C4  H21 SING N N 54 
YMQ C4  H22 SING N N 55 
YMQ C4  H23 SING N N 56 
YMQ C19 H24 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMQ InChI            InChI                1.06  "InChI=1S/C15H16N2O2.2C2H4O2.2Ru/c1-18-14-7-3-12(4-8-14)16-11-17-13-5-9-15(19-2)10-6-13;2*1-2(3)4;;/h3-10H,11H2,1-2H3;2*2H,1H3;;/q3*-2;2*+3" 
YMQ InChIKey         InChI                1.06  ILDPKHMKTATIQB-UHFFFAOYSA-N                                                                                                                  
YMQ SMILES_CANONICAL CACTVS               3.385 "COc1ccc(cc1)N2CN(c3ccc(OC)cc3)[Ru]45O[C@@H](C)O[Ru]24O[C@@H](C)O5"                                                                          
YMQ SMILES           CACTVS               3.385 "COc1ccc(cc1)N2CN(c3ccc(OC)cc3)[Ru]45O[CH](C)O[Ru]24O[CH](C)O5"                                                                              
YMQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23N(CN([Ru]2(O1)OC(O3)C)c4ccc(cc4)OC)c5ccc(cc5)OC"                                                                                  
YMQ SMILES           "OpenEye OEToolkits" 2.0.7 "CC1O[Ru]23N(CN([Ru]2(O1)OC(O3)C)c4ccc(cc4)OC)c5ccc(cc5)OC"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           YMQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9,11-bis(4-methoxyphenyl)-3,7-dimethyl-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMQ "Create component" 2023-06-19 PDBE 
YMQ "Initial release"  2023-07-19 RCSB 
# 
