data_Y8Q
# 
_chem_comp.id                                    Y8Q 
_chem_comp.name                                  "(3R)-3-{2-[2-methoxy-6-({methyl[(4-methyl-1,3-thiazol-2-yl)methyl]amino}methyl)phenoxy]acetamido}-N-methyl-3-[3-(trifluoromethyl)phenyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H31 F3 N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.620 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y8Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y8Q C13 C1  C 0 1 N N N N N N -13.023 12.069 50.017 -3.823 1.240  2.343  C13 Y8Q 1  
Y8Q C16 C2  C 0 1 N N N N N N -14.462 12.782 51.880 -5.459 1.327  4.146  C16 Y8Q 2  
Y8Q C18 C3  C 0 1 N N N N N N -14.601 8.530  46.824 0.019  1.256  0.058  C18 Y8Q 3  
Y8Q C19 C4  C 0 1 N N N N N N -14.072 7.505  45.879 1.189  1.915  -0.627 C19 Y8Q 4  
Y8Q C22 C5  C 0 1 Y N N N N N -12.021 7.674  44.533 3.550  2.106  -0.416 C22 Y8Q 5  
Y8Q C23 C6  C 0 1 Y N N N N N -11.460 8.836  44.076 3.937  3.342  0.093  C23 Y8Q 6  
Y8Q C24 C7  C 0 1 Y N N N N N -10.849 8.926  42.799 5.110  3.932  -0.347 C24 Y8Q 7  
Y8Q C25 C8  C 0 1 Y N N N N N -10.894 7.739  41.992 5.894  3.294  -1.290 C25 Y8Q 8  
Y8Q C26 C9  C 0 1 Y N N N N N -11.437 6.519  42.442 5.509  2.066  -1.797 C26 Y8Q 9  
Y8Q C27 C10 C 0 1 Y N N N N N -12.047 6.477  43.762 4.340  1.471  -1.361 C27 Y8Q 10 
Y8Q C1  C11 C 0 1 Y N N N N N -16.768 13.165 47.477 -4.881 1.606  -2.396 C1  Y8Q 11 
Y8Q C2  C12 C 0 1 Y N N N N N -16.053 12.069 48.096 -3.808 1.749  -1.535 C2  Y8Q 12 
Y8Q C3  C13 C 0 1 Y N N N N N -14.810 11.655 47.566 -3.547 0.777  -0.589 C3  Y8Q 13 
Y8Q C4  C14 C 0 1 Y N N N N N -14.238 12.300 46.456 -4.357 -0.340 -0.503 C4  Y8Q 14 
Y8Q C5  C15 C 0 1 Y N N N N N -14.975 13.343 45.864 -5.429 -0.484 -1.364 C5  Y8Q 15 
Y8Q C6  C16 C 0 1 Y N N N N N -16.210 13.780 46.343 -5.691 0.489  -2.310 C6  Y8Q 16 
Y8Q C7  C17 C 0 1 N N S N N N -14.067 10.514 48.284 -2.378 0.934  0.350  C7  Y8Q 17 
Y8Q C8  C18 C 0 1 N N N N N N -14.407 14.034 44.671 -6.312 -1.702 -1.271 C8  Y8Q 18 
Y8Q F9  F1  F 0 1 N N N N N N -13.414 13.369 44.057 -6.833 -1.997 -2.535 F9  Y8Q 19 
Y8Q F10 F2  F 0 1 N N N N N N -15.337 14.275 43.754 -5.561 -2.788 -0.810 F10 Y8Q 20 
Y8Q F11 F3  F 0 1 N N N N N N -13.857 15.235 44.965 -7.362 -1.449 -0.381 F11 Y8Q 21 
Y8Q C12 C19 C 0 1 N N N N N N -12.728 10.995 48.965 -2.762 1.883  1.487  C12 Y8Q 22 
Y8Q N14 N1  N 0 1 N N N N N N -14.051 11.808 50.867 -4.424 1.951  3.318  N14 Y8Q 23 
Y8Q O15 O1  O 0 1 N N N N N N -12.445 13.112 50.042 -4.139 0.086  2.150  O15 Y8Q 24 
Y8Q N17 N2  N 0 1 N N N N N N -13.652 9.493  47.296 -1.235 1.484  -0.381 N17 Y8Q 25 
Y8Q O20 O2  O 0 1 N N N N N N -15.778 8.544  47.263 0.206  0.519  1.003  O20 Y8Q 26 
Y8Q O21 O3  O 0 1 N N N N N N -12.599 7.690  45.806 2.402  1.520  0.017  O21 Y8Q 27 
Y8Q O28 O4  O 0 1 N N N N N N -11.540 9.914  44.968 3.165  3.969  1.021  O28 Y8Q 28 
Y8Q C29 C20 C 0 1 N N N N N N -10.775 11.099 44.571 3.624  5.234  1.499  C29 Y8Q 29 
Y8Q C30 C21 C 0 1 N N N N N N -12.736 5.205  44.309 3.924  0.133  -1.915 C30 Y8Q 30 
Y8Q N31 N3  N 0 1 N N N N N N -12.264 3.960  43.636 4.256  -0.922 -0.947 N31 Y8Q 31 
Y8Q C32 C22 C 0 1 N N N N N N -10.806 3.673  44.031 3.591  -2.184 -1.296 C32 Y8Q 32 
Y8Q C33 C23 C 0 1 N N N N N N -13.219 2.880  44.054 5.710  -1.104 -0.846 C33 Y8Q 33 
Y8Q C34 C24 C 0 1 Y N N N N N -10.344 2.608  43.118 3.751  -3.165 -0.163 C34 Y8Q 34 
Y8Q N35 N4  N 0 1 Y N N N N N -9.642  1.505  43.444 2.932  -3.292 0.826  N35 Y8Q 35 
Y8Q C36 C25 C 0 1 Y N N N N N -9.385  0.753  42.249 3.222  -4.203 1.733  C36 Y8Q 36 
Y8Q C37 C26 C 0 1 Y N N N N N -9.904  1.263  41.061 4.348  -4.881 1.497  C37 Y8Q 37 
Y8Q S38 S1  S 0 1 Y N N N N N -10.705 2.740  41.384 5.041  -4.276 -0.006 S38 Y8Q 38 
Y8Q C39 C27 C 0 1 N N N N N N -8.631  -0.513 42.417 2.354  -4.457 2.939  C39 Y8Q 39 
Y8Q H50 H1  H 0 1 N N N N N N -15.306 12.377 52.458 -5.826 2.050  4.874  H50 Y8Q 40 
Y8Q H48 H2  H 0 1 N N N N N N -13.619 12.986 52.556 -6.284 1.001  3.511  H48 Y8Q 41 
Y8Q H49 H3  H 0 1 N N N N N N -14.771 13.716 51.387 -5.039 0.467  4.667  H49 Y8Q 42 
Y8Q H52 H4  H 0 1 N N N N N N -14.307 6.496  46.248 1.216  1.611  -1.673 H52 Y8Q 43 
Y8Q H53 H5  H 0 1 N N N N N N -14.519 7.644  44.884 1.082  2.998  -0.566 H53 Y8Q 44 
Y8Q H54 H6  H 0 1 N N N N N N -10.377 9.834  42.454 5.413  4.892  0.046  H54 Y8Q 45 
Y8Q H55 H7  H 0 1 N N N N N N -10.492 7.784  40.991 6.808  3.755  -1.633 H55 Y8Q 46 
Y8Q H56 H8  H 0 1 N N N N N N -11.401 5.636  41.821 6.124  1.571  -2.534 H56 Y8Q 47 
Y8Q H40 H9  H 0 1 N N N N N N -17.712 13.503 47.879 -5.088 2.368  -3.132 H40 Y8Q 48 
Y8Q H41 H10 H 0 1 N N N N N N -16.468 11.570 48.959 -3.175 2.622  -1.602 H41 Y8Q 49 
Y8Q H42 H11 H 0 1 N N N N N N -13.272 12.007 46.073 -4.153 -1.100 0.236  H42 Y8Q 50 
Y8Q H43 H12 H 0 1 N N N N N N -16.733 14.584 45.847 -6.529 0.377  -2.983 H43 Y8Q 51 
Y8Q H44 H13 H 0 1 N N N N N N -14.721 10.068 49.048 -2.112 -0.039 0.764  H44 Y8Q 52 
Y8Q H45 H14 H 0 1 N N N N N N -12.239 10.137 49.449 -3.146 2.814  1.069  H45 Y8Q 53 
Y8Q H46 H15 H 0 1 N N N N N N -12.060 11.413 48.197 -1.883 2.094  2.096  H46 Y8Q 54 
Y8Q H47 H16 H 0 1 N N N N N N -14.535 10.936 50.799 -4.170 2.874  3.472  H47 Y8Q 55 
Y8Q H51 H17 H 0 1 N N N N N N -12.711 9.476  46.959 -1.380 2.013  -1.181 H51 Y8Q 56 
Y8Q H59 H18 H 0 1 N N N N N N -10.899 11.887 45.329 3.703  5.931  0.664  H59 Y8Q 57 
Y8Q H57 H19 H 0 1 N N N N N N -9.710  10.836 44.486 2.918  5.624  2.232  H57 Y8Q 58 
Y8Q H58 H20 H 0 1 N N N N N N -11.141 11.463 43.600 4.602  5.114  1.965  H58 Y8Q 59 
Y8Q H60 H21 H 0 1 N N N N N N -12.524 5.125  45.385 2.849  0.133  -2.097 H60 Y8Q 60 
Y8Q H61 H22 H 0 1 N N N N N N -13.821 5.299  44.155 4.451  -0.053 -2.850 H61 Y8Q 61 
Y8Q H63 H24 H 0 1 N N N N N N -10.191 4.577  43.908 2.530  -2.000 -1.469 H63 Y8Q 62 
Y8Q H62 H25 H 0 1 N N N N N N -10.752 3.332  45.075 4.041  -2.595 -2.199 H62 Y8Q 63 
Y8Q H66 H26 H 0 1 N N N N N N -12.924 1.928  43.588 6.166  -0.186 -0.474 H66 Y8Q 64 
Y8Q H64 H27 H 0 1 N N N N N N -13.197 2.774  45.149 5.927  -1.921 -0.159 H64 Y8Q 65 
Y8Q H65 H28 H 0 1 N N N N N N -14.237 3.146  43.732 6.117  -1.338 -1.830 H65 Y8Q 66 
Y8Q H67 H29 H 0 1 N N N N N N -9.815  0.799  40.090 4.760  -5.665 2.116  H67 Y8Q 67 
Y8Q H70 H30 H 0 1 N N N N N N -8.390  -0.659 43.480 1.612  -5.218 2.698  H70 Y8Q 68 
Y8Q H68 H31 H 0 1 N N N N N N -9.244  -1.354 42.061 2.974  -4.803 3.766  H68 Y8Q 69 
Y8Q H69 H32 H 0 1 N N N N N N -7.700  -0.465 41.834 1.849  -3.534 3.224  H69 Y8Q 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y8Q C1  C6  DOUB Y N 1  
Y8Q C1  C2  SING Y N 2  
Y8Q C2  C3  DOUB Y N 3  
Y8Q C3  C7  SING N N 4  
Y8Q C3  C4  SING Y N 5  
Y8Q C4  C5  DOUB Y N 6  
Y8Q C5  C6  SING Y N 7  
Y8Q C5  C8  SING N N 8  
Y8Q C7  C12 SING N N 9  
Y8Q C7  N17 SING N N 10 
Y8Q C8  F11 SING N N 11 
Y8Q C8  F9  SING N N 12 
Y8Q C8  F10 SING N N 13 
Y8Q C12 C13 SING N N 14 
Y8Q C13 N14 SING N N 15 
Y8Q C13 O15 DOUB N N 16 
Y8Q N14 C16 SING N N 17 
Y8Q N17 C18 SING N N 18 
Y8Q C18 C19 SING N N 19 
Y8Q C18 O20 DOUB N N 20 
Y8Q C19 O21 SING N N 21 
Y8Q O21 C22 SING N N 22 
Y8Q C22 C23 DOUB Y N 23 
Y8Q C22 C27 SING Y N 24 
Y8Q C23 C24 SING Y N 25 
Y8Q C23 O28 SING N N 26 
Y8Q C24 C25 DOUB Y N 27 
Y8Q C25 C26 SING Y N 28 
Y8Q C26 C27 DOUB Y N 29 
Y8Q C27 C30 SING N N 30 
Y8Q O28 C29 SING N N 31 
Y8Q C30 N31 SING N N 32 
Y8Q N31 C32 SING N N 33 
Y8Q N31 C33 SING N N 34 
Y8Q C32 C34 SING N N 35 
Y8Q C34 N35 DOUB Y N 36 
Y8Q C34 S38 SING Y N 37 
Y8Q N35 C36 SING Y N 38 
Y8Q C36 C37 DOUB Y N 39 
Y8Q C36 C39 SING N N 40 
Y8Q C37 S38 SING Y N 41 
Y8Q C16 H50 SING N N 42 
Y8Q C16 H48 SING N N 43 
Y8Q C16 H49 SING N N 44 
Y8Q C19 H52 SING N N 45 
Y8Q C19 H53 SING N N 46 
Y8Q C24 H54 SING N N 47 
Y8Q C25 H55 SING N N 48 
Y8Q C26 H56 SING N N 49 
Y8Q C1  H40 SING N N 50 
Y8Q C2  H41 SING N N 51 
Y8Q C4  H42 SING N N 52 
Y8Q C6  H43 SING N N 53 
Y8Q C7  H44 SING N N 54 
Y8Q C12 H45 SING N N 55 
Y8Q C12 H46 SING N N 56 
Y8Q N14 H47 SING N N 57 
Y8Q N17 H51 SING N N 58 
Y8Q C29 H59 SING N N 59 
Y8Q C29 H57 SING N N 60 
Y8Q C29 H58 SING N N 61 
Y8Q C30 H60 SING N N 62 
Y8Q C30 H61 SING N N 63 
Y8Q C32 H63 SING N N 64 
Y8Q C32 H62 SING N N 65 
Y8Q C33 H66 SING N N 66 
Y8Q C33 H64 SING N N 67 
Y8Q C33 H65 SING N N 68 
Y8Q C37 H67 SING N N 69 
Y8Q C39 H70 SING N N 70 
Y8Q C39 H68 SING N N 71 
Y8Q C39 H69 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y8Q SMILES           ACDLabs              12.01 "Cc1csc(CN(C)Cc2cccc(OC)c2OCC(=O)NC(CC(=O)NC)c2cccc(c2)C(F)(F)F)n1"                                                                                                                          
Y8Q InChI            InChI                1.06  "InChI=1S/C27H31F3N4O4S/c1-17-16-39-25(32-17)14-34(3)13-19-8-6-10-22(37-4)26(19)38-15-24(36)33-21(12-23(35)31-2)18-7-5-9-20(11-18)27(28,29)30/h5-11,16,21H,12-15H2,1-4H3,(H,31,35)(H,33,36)" 
Y8Q InChIKey         InChI                1.06  GRMFBCFCVUZSEE-UHFFFAOYSA-N                                                                                                                                                                  
Y8Q SMILES_CANONICAL CACTVS               3.385 "CNC(=O)C[C@H](NC(=O)COc1c(CN(C)Cc2scc(C)n2)cccc1OC)c3cccc(c3)C(F)(F)F"                                                                                                                      
Y8Q SMILES           CACTVS               3.385 "CNC(=O)C[CH](NC(=O)COc1c(CN(C)Cc2scc(C)n2)cccc1OC)c3cccc(c3)C(F)(F)F"                                                                                                                       
Y8Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1csc(n1)CN(C)Cc2cccc(c2OCC(=O)N[C@@H](CC(=O)NC)c3cccc(c3)C(F)(F)F)OC"                                                                                                                     
Y8Q SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1csc(n1)CN(C)Cc2cccc(c2OCC(=O)NC(CC(=O)NC)c3cccc(c3)C(F)(F)F)OC"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y8Q "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-3-{2-[2-methoxy-6-({methyl[(4-methyl-1,3-thiazol-2-yl)methyl]amino}methyl)phenoxy]acetamido}-N-methyl-3-[3-(trifluoromethyl)phenyl]propanamide"            
Y8Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[2-[2-methoxy-6-[[methyl-[(4-methyl-1,3-thiazol-2-yl)methyl]amino]methyl]phenoxy]ethanoylamino]-~{N}-methyl-3-[3-(trifluoromethyl)phenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y8Q "Create component" 2023-06-12 RCSB 
Y8Q "Initial release"  2024-12-18 RCSB 
# 
