data_Y4Q
# 
_chem_comp.id                                    Y4Q 
_chem_comp.name                                  "6-methyl-2-{2-[(1E)-3-(2-nitrophenyl)prop-1-en-1-yl]hydrazinyl}pyrimidin-4(5H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H15 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-04 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        301.301 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y4Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FO4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y4Q C1  C1  C 0 1 N N N 29.644 -1.000 -30.730 -5.753 0.632  -0.114 C1  Y4Q 1  
Y4Q C2  C2  C 0 1 N N N 28.455 -0.546 -28.844 -3.456 0.347  -0.276 C2  Y4Q 2  
Y4Q C3  C3  C 0 1 N N N 26.034 -0.358 -26.368 0.107  0.698  -1.043 C3  Y4Q 3  
Y4Q C4  C4  C 0 1 N N N 25.744 0.106  -25.413 1.247  0.075  -0.812 C4  Y4Q 4  
Y4Q C5  C5  C 0 1 N N N 24.528 -0.064 -24.898 2.535  0.629  -1.366 C5  Y4Q 5  
Y4Q C6  C6  C 0 1 Y N N 24.025 0.444  -23.621 3.522  0.823  -0.244 C6  Y4Q 6  
Y4Q C7  C7  C 0 1 Y N N 24.834 1.240  -22.806 3.607  2.045  0.398  C7  Y4Q 7  
Y4Q C8  C8  C 0 1 Y N N 24.366 1.779  -21.621 4.512  2.223  1.427  C8  Y4Q 8  
Y4Q C9  C9  C 0 1 Y N N 23.083 1.524  -21.203 5.332  1.180  1.815  C9  Y4Q 9  
Y4Q O1  O1  O 0 1 N N N 20.915 -1.194 -23.406 3.157  -1.956 -0.889 O1  Y4Q 10 
Y4Q O2  O2  O 0 1 N N N 31.331 1.473  -28.615 -4.404 -2.351 1.612  O2  Y4Q 11 
Y4Q N3  N1  N 0 1 N N N 21.792 -0.556 -23.967 4.242  -1.531 -0.535 N3  Y4Q 12 
Y4Q O   O3  O 0 1 N N N 21.931 -0.524 -25.178 5.249  -2.184 -0.743 O   Y4Q 13 
Y4Q C11 C10 C 0 1 Y N N 22.728 0.210  -23.158 4.338  -0.221 0.148  C11 Y4Q 14 
Y4Q C10 C11 C 0 1 Y N N 22.250 0.729  -21.969 5.246  -0.041 1.174  C10 Y4Q 15 
Y4Q N2  N2  N 0 1 N N N 27.134 -0.112 -26.947 -1.079 0.187  -0.533 N2  Y4Q 16 
Y4Q N1  N3  N 0 1 N N N 27.298 -0.733 -28.152 -2.290 0.849  -0.778 N1  Y4Q 17 
Y4Q N   N4  N 0 1 N N N 28.532 -1.202 -30.010 -4.591 1.024  -0.543 N   Y4Q 18 
Y4Q N4  N5  N 0 1 N N N 29.359 0.296  -28.302 -3.387 -0.762 0.431  N4  Y4Q 19 
Y4Q C12 C12 C 0 1 N N N 30.463 0.522  -29.050 -4.475 -1.328 0.961  C12 Y4Q 20 
Y4Q C13 C13 C 0 1 N N N 30.646 -0.142 -30.293 -5.804 -0.637 0.715  C13 Y4Q 21 
Y4Q C   C14 C 0 1 N N N 29.755 -1.764 -32.014 -7.003 1.414  -0.424 C   Y4Q 22 
Y4Q H1  H1  H 0 1 N N N 25.351 -1.054 -26.832 0.097  1.605  -1.629 H1  Y4Q 23 
Y4Q H2  H2  H 0 1 N N N 26.462 0.713  -24.882 1.258  -0.833 -0.227 H2  Y4Q 24 
Y4Q H3  H3  H 0 1 N N N 23.842 0.346  -25.654 2.947  -0.069 -2.095 H3  Y4Q 25 
Y4Q H4  H4  H 0 1 N N N 24.398 -1.155 -24.838 2.340  1.586  -1.849 H4  Y4Q 26 
Y4Q H5  H5  H 0 1 N N N 25.851 1.440  -23.109 2.966  2.860  0.095  H5  Y4Q 27 
Y4Q H6  H6  H 0 1 N N N 25.013 2.403  -21.022 4.579  3.178  1.928  H6  Y4Q 28 
Y4Q H7  H7  H 0 1 N N N 22.724 1.945  -20.275 6.039  1.319  2.619  H7  Y4Q 29 
Y4Q H8  H8  H 0 1 N N N 21.242 0.517  -21.644 5.884  -0.858 1.480  H8  Y4Q 30 
Y4Q H9  H9  H 0 1 N N N 27.876 -0.404 -26.343 -1.070 -0.628 -0.007 H9  Y4Q 31 
Y4Q H10 H10 H 0 1 N N N 26.576 -1.318 -28.522 -2.299 1.664  -1.304 H10 Y4Q 32 
Y4Q H11 H11 H 0 1 N N N 31.571 -0.733 -30.215 -6.244 -0.394 1.682  H11 Y4Q 33 
Y4Q H12 H12 H 0 1 N N N 30.770 0.634  -31.063 -6.466 -1.343 0.214  H12 Y4Q 34 
Y4Q H13 H13 H 0 1 N N N 28.860 -2.389 -32.148 -7.171 2.155  0.357  H13 Y4Q 35 
Y4Q H14 H14 H 0 1 N N N 29.839 -1.059 -32.854 -6.890 1.916  -1.384 H14 Y4Q 36 
Y4Q H15 H15 H 0 1 N N N 30.648 -2.406 -31.983 -7.855 0.734  -0.468 H15 Y4Q 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y4Q C   C1  SING N N 1  
Y4Q C1  C13 SING N N 2  
Y4Q C1  N   DOUB N N 3  
Y4Q C13 C12 SING N N 4  
Y4Q N   C2  SING N N 5  
Y4Q C12 O2  DOUB N N 6  
Y4Q C12 N4  SING N N 7  
Y4Q C2  N4  DOUB N N 8  
Y4Q C2  N1  SING N N 9  
Y4Q N1  N2  SING N N 10 
Y4Q N2  C3  SING N N 11 
Y4Q C3  C4  DOUB N E 12 
Y4Q C4  C5  SING N N 13 
Y4Q O   N3  DOUB N N 14 
Y4Q C5  C6  SING N N 15 
Y4Q N3  O1  DOUB N N 16 
Y4Q N3  C11 SING N N 17 
Y4Q C6  C11 DOUB Y N 18 
Y4Q C6  C7  SING Y N 19 
Y4Q C11 C10 SING Y N 20 
Y4Q C7  C8  DOUB Y N 21 
Y4Q C10 C9  DOUB Y N 22 
Y4Q C8  C9  SING Y N 23 
Y4Q C3  H1  SING N N 24 
Y4Q C4  H2  SING N N 25 
Y4Q C5  H3  SING N N 26 
Y4Q C5  H4  SING N N 27 
Y4Q C7  H5  SING N N 28 
Y4Q C8  H6  SING N N 29 
Y4Q C9  H7  SING N N 30 
Y4Q C10 H8  SING N N 31 
Y4Q N2  H9  SING N N 32 
Y4Q N1  H10 SING N N 33 
Y4Q C13 H11 SING N N 34 
Y4Q C13 H12 SING N N 35 
Y4Q C   H13 SING N N 36 
Y4Q C   H14 SING N N 37 
Y4Q C   H15 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y4Q SMILES           ACDLabs              12.01 "CC1=NC(NN\C=C\Cc2ccccc2N(=O)=O)=NC(=O)C1"                                                                                      
Y4Q InChI            InChI                1.06  "InChI=1S/C14H15N5O3/c1-10-9-13(20)17-14(16-10)18-15-8-4-6-11-5-2-3-7-12(11)19(21)22/h2-5,7-8,15H,6,9H2,1H3,(H,17,18,20)/b8-4+" 
Y4Q InChIKey         InChI                1.06  RQPQHPRGYAGHMJ-XBXARRHUSA-N                                                                                                     
Y4Q SMILES_CANONICAL CACTVS               3.385 "CC1=NC(=NC(=O)C1)NN\C=C\Cc2ccccc2[N](=O)=O"                                                                                    
Y4Q SMILES           CACTVS               3.385 "CC1=NC(=NC(=O)C1)NNC=CCc2ccccc2[N](=O)=O"                                                                                      
Y4Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=NC(=NC(=O)C1)NN/C=C/Cc2ccccc2N(=O)=O"                                                                                      
Y4Q SMILES           "OpenEye OEToolkits" 2.0.7 "CC1=NC(=NC(=O)C1)NNC=CCc2ccccc2N(=O)=O"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y4Q "SYSTEMATIC NAME" ACDLabs              12.01 "6-methyl-2-{2-[(1E)-3-(2-nitrophenyl)prop-1-en-1-yl]hydrazinyl}pyrimidin-4(5H)-one"   
Y4Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-methyl-2-[2-[(~{E})-3-(2-nitrophenyl)prop-1-enyl]hydrazinyl]-5~{H}-pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y4Q "Create component" 2023-01-04 RCSB 
Y4Q "Initial release"  2023-05-24 RCSB 
# 
