data_XKQ
# 
_chem_comp.id                                    XKQ 
_chem_comp.name                                  "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H40 F2 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        518.594 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XKQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UTE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XKQ N1  N1  N 0 1 N N N N N N 7.672  10.441 24.157 -1.743 -0.935 0.807  N1  XKQ 1  
XKQ N3  N2  N 0 1 N N N N N N 9.702  16.569 20.231 3.806  -0.364 -3.664 N3  XKQ 2  
XKQ C4  C1  C 0 1 N N N N N N 10.680 8.684  23.387 -2.851 0.946  -2.490 C4  XKQ 3  
XKQ C5  C2  C 0 1 N N N N N N 9.410  7.221  21.823 -3.274 -1.425 -1.825 C5  XKQ 4  
XKQ C6  C3  C 0 1 N N N N N N 6.651  6.642  25.078 -5.267 2.133  0.193  C6  XKQ 5  
XKQ C7  C4  C 0 1 N N N N N N 4.973  5.232  25.931 -7.042 3.691  0.540  C7  XKQ 6  
XKQ C8  C5  C 0 1 N N S N N N 7.224  11.697 23.556 -0.370 -1.311 1.188  C8  XKQ 7  
XKQ C10 C6  C 0 1 N N R N N N 7.269  11.822 26.014 -1.717 -3.312 0.742  C10 XKQ 8  
XKQ C13 C7  C 0 1 N N N N N N 4.976  12.575 25.635 -0.802 -4.757 2.523  C13 XKQ 9  
XKQ C15 C8  C 0 1 N N N N N N 8.185  12.157 22.454 0.615  -0.700 0.226  C15 XKQ 10 
XKQ C17 C9  C 0 1 N N N N N N 8.101  12.682 18.978 4.055  0.582  0.413  C17 XKQ 11 
XKQ C20 C10 C 0 1 N N N N N N 9.230  9.266  17.468 4.247  3.362  3.071  C20 XKQ 12 
XKQ C21 C11 C 0 1 N N R N N N 7.979  14.857 20.346 3.372  -1.069 -1.333 C21 XKQ 13 
XKQ C22 C12 C 0 1 N N N N N N 8.938  15.725 19.542 4.238  -0.430 -2.389 C22 XKQ 14 
XKQ O5  O1  O 0 1 N N N N N N 9.405  12.000 22.562 0.240  -0.309 -0.859 O5  XKQ 15 
XKQ N2  N3  N 0 1 N N N N N N 7.604  12.663 21.364 1.913  -0.588 0.570  N2  XKQ 16 
XKQ C16 C13 C 0 1 N N S N N N 8.350  13.360 20.325 2.871  0.006  -0.366 C16 XKQ 17 
XKQ O4  O2  O 0 1 N N N N N N 8.991  15.607 18.321 5.322  0.024  -2.091 O4  XKQ 18 
XKQ C23 C14 C 0 1 N N N N N N 10.830 17.260 19.633 4.692  0.151  -4.711 C23 XKQ 19 
XKQ O3  O3  O 0 1 N N N N N N 7.919  15.299 21.695 2.256  -1.708 -1.955 O3  XKQ 20 
XKQ C18 C15 C 0 1 N N N N N N 8.793  11.317 18.872 3.559  1.684  1.353  C18 XKQ 21 
XKQ C19 C16 C 0 1 N N N N N N 8.358  10.505 17.683 4.743  2.260  2.132  C19 XKQ 22 
XKQ F1  F1  F 0 1 N N N N N N 7.058  10.102 17.878 5.674  2.796  1.236  F1  XKQ 23 
XKQ F   F2  F 0 1 N N N N N N 8.359  11.282 16.600 5.347  1.245  2.881  F   XKQ 24 
XKQ C9  C17 C 0 1 N N S N N N 7.211  12.689 24.743 -0.284 -2.847 1.122  C9  XKQ 25 
XKQ C14 C18 C 0 1 N N N N N N 5.920  13.496 24.900 -0.074 -3.392 2.555  C14 XKQ 26 
XKQ C12 C19 C 0 1 N N N N N N 5.805  11.545 26.396 -2.052 -4.499 1.657  C12 XKQ 27 
XKQ C11 C20 C 0 1 N N N N N N 8.037  10.584 25.575 -2.592 -2.100 1.143  C11 XKQ 28 
XKQ C   C21 C 0 1 N N N N N N 7.731  9.333  23.391 -2.145 0.234  0.269  C   XKQ 29 
XKQ O   O4  O 0 1 N N N N N N 7.352  9.340  22.229 -1.353 1.141  0.130  O   XKQ 30 
XKQ C1  C22 C 0 1 N N S N N N 8.318  8.044  23.983 -3.579 0.413  -0.160 C1  XKQ 31 
XKQ C2  C23 C 0 1 N N N N N N 9.632  7.573  23.296 -3.722 0.025  -1.633 C2  XKQ 32 
XKQ C3  C24 C 0 1 N N N N N N 10.158 6.333  24.024 -5.185 0.167  -2.058 C3  XKQ 33 
XKQ N   N4  N 0 1 N N N N N N 7.277  7.032  23.953 -3.970 1.813  0.017  N   XKQ 34 
XKQ O2  O5  O 0 1 N N N N N N 6.932  7.012  26.200 -6.112 1.260  0.205  O2  XKQ 35 
XKQ O1  O6  O 0 1 N N N N N N 5.686  5.768  24.792 -5.627 3.420  0.355  O1  XKQ 36 
XKQ H36 H1  H 0 1 N N N N N N 9.492  16.733 21.195 2.909  -0.657 -3.889 H36 XKQ 37 
XKQ H9  H2  H 0 1 N N N N N N 10.848 8.945  24.442 -2.954 0.670  -3.540 H9  XKQ 38 
XKQ H10 H3  H 0 1 N N N N N N 11.623 8.335  22.941 -3.171 1.979  -2.353 H10 XKQ 39 
XKQ H8  H4  H 0 1 N N N N N N 10.323 9.570  22.842 -1.809 0.845  -2.188 H8  XKQ 40 
XKQ H13 H5  H 0 1 N N N N N N 8.658  6.422  21.746 -2.257 -1.543 -1.451 H13 XKQ 41 
XKQ H11 H6  H 0 1 N N N N N N 9.056  8.111  21.283 -3.942 -2.088 -1.276 H11 XKQ 42 
XKQ H12 H7  H 0 1 N N N N N N 10.357 6.876  21.382 -3.303 -1.677 -2.885 H12 XKQ 43 
XKQ H17 H8  H 0 1 N N N N N N 4.204  4.526  25.584 -7.596 3.340  -0.331 H17 XKQ 44 
XKQ H16 H9  H 0 1 N N N N N N 5.679  4.709  26.592 -7.398 3.173  1.430  H16 XKQ 45 
XKQ H15 H10 H 0 1 N N N N N N 4.494  6.054  26.483 -7.194 4.764  0.659  H15 XKQ 46 
XKQ H1  H11 H 0 1 N N N N N N 6.208  11.595 23.147 -0.160 -0.972 2.203  H1  XKQ 47 
XKQ H3  H12 H 0 1 N N N N N N 7.794  12.348 26.825 -1.806 -3.566 -0.314 H3  XKQ 48 
XKQ H23 H13 H 0 1 N N N N N N 4.365  13.156 26.342 -0.169 -5.516 2.063  H23 XKQ 49 
XKQ H22 H14 H 0 1 N N N N N N 4.319  12.065 24.915 -1.091 -5.061 3.529  H22 XKQ 50 
XKQ H27 H15 H 0 1 N N N N N N 8.483  13.334 18.179 4.526  -0.208 0.997  H27 XKQ 51 
XKQ H28 H16 H 0 1 N N N N N N 7.018  12.540 18.849 4.780  1.000  -0.285 H28 XKQ 52 
XKQ H31 H17 H 0 1 N N N N N N 9.212  8.643  18.374 3.776  4.153  2.488  H31 XKQ 53 
XKQ H32 H18 H 0 1 N N N N N N 8.841  8.687  16.617 3.521  2.944  3.769  H32 XKQ 54 
XKQ H33 H19 H 0 1 N N N N N N 10.264 9.577  17.257 5.090  3.773  3.626  H33 XKQ 55 
XKQ H34 H20 H 0 1 N N N N N N 6.981  14.955 19.893 3.955  -1.808 -0.784 H34 XKQ 56 
XKQ H26 H21 H 0 1 N N N N N N 6.615  12.559 21.256 2.214  -0.901 1.438  H26 XKQ 57 
XKQ H4  H22 H 0 1 N N N N N N 9.424  13.280 20.548 2.384  0.802  -0.928 H4  XKQ 58 
XKQ H39 H23 H 0 1 N N N N N N 11.310 17.901 20.387 4.173  0.128  -5.670 H39 XKQ 59 
XKQ H38 H24 H 0 1 N N N N N N 11.557 16.522 19.262 4.976  1.177  -4.475 H38 XKQ 60 
XKQ H37 H25 H 0 1 N N N N N N 10.478 17.880 18.796 5.587  -0.469 -4.768 H37 XKQ 61 
XKQ H35 H26 H 0 1 N N N N N N 7.318  14.748 22.183 1.655  -2.141 -1.334 H35 XKQ 62 
XKQ H29 H27 H 0 1 N N N N N N 8.570  10.744 19.784 3.088  2.474  0.769  H29 XKQ 63 
XKQ H30 H28 H 0 1 N N N N N N 9.878  11.483 18.800 2.833  1.266  2.051  H30 XKQ 64 
XKQ H2  H29 H 0 1 N N N N N N 8.083  13.358 24.693 0.480  -3.194 0.426  H2  XKQ 65 
XKQ H25 H30 H 0 1 N N N N N N 6.103  14.410 25.484 -0.531 -2.729 3.289  H25 XKQ 66 
XKQ H24 H31 H 0 1 N N N N N N 5.510  13.766 23.916 0.987  -3.526 2.764  H24 XKQ 67 
XKQ H20 H32 H 0 1 N N N N N N 5.663  11.664 27.480 -2.902 -4.252 2.293  H20 XKQ 68 
XKQ H21 H33 H 0 1 N N N N N N 5.517  10.526 26.098 -2.278 -5.380 1.057  H21 XKQ 69 
XKQ H18 H34 H 0 1 N N N N N N 7.725  9.702  26.153 -2.810 -2.121 2.211  H18 XKQ 70 
XKQ H19 H35 H 0 1 N N N N N N 9.121  10.732 25.689 -3.514 -2.084 0.562  H19 XKQ 71 
XKQ H   H36 H 0 1 N N N N N N 8.564  8.252  25.035 -4.222 -0.224 0.447  H   XKQ 72 
XKQ H7  H37 H 0 1 N N N N N N 10.322 6.572  25.085 -5.806 -0.489 -1.447 H7  XKQ 73 
XKQ H6  H38 H 0 1 N N N N N N 9.422  5.520  23.941 -5.505 1.200  -1.921 H6  XKQ 74 
XKQ H5  H39 H 0 1 N N N N N N 11.108 6.016  23.569 -5.288 -0.109 -3.107 H5  XKQ 75 
XKQ H14 H40 H 0 1 N N N N N N 7.021  6.617  23.080 -3.296 2.510  0.007  H14 XKQ 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XKQ F   C19 SING N N 1  
XKQ C20 C19 SING N N 2  
XKQ C19 F1  SING N N 3  
XKQ C19 C18 SING N N 4  
XKQ O4  C22 DOUB N N 5  
XKQ C18 C17 SING N N 6  
XKQ C17 C16 SING N N 7  
XKQ C22 N3  SING N N 8  
XKQ C22 C21 SING N N 9  
XKQ C23 N3  SING N N 10 
XKQ C16 C21 SING N N 11 
XKQ C16 N2  SING N N 12 
XKQ C21 O3  SING N N 13 
XKQ N2  C15 SING N N 14 
XKQ C5  C2  SING N N 15 
XKQ O   C   DOUB N N 16 
XKQ C15 O5  DOUB N N 17 
XKQ C15 C8  SING N N 18 
XKQ C2  C4  SING N N 19 
XKQ C2  C1  SING N N 20 
XKQ C2  C3  SING N N 21 
XKQ C   C1  SING N N 22 
XKQ C   N1  SING N N 23 
XKQ C8  N1  SING N N 24 
XKQ C8  C9  SING N N 25 
XKQ N   C1  SING N N 26 
XKQ N   C6  SING N N 27 
XKQ N1  C11 SING N N 28 
XKQ C9  C14 SING N N 29 
XKQ C9  C10 SING N N 30 
XKQ O1  C6  SING N N 31 
XKQ O1  C7  SING N N 32 
XKQ C14 C13 SING N N 33 
XKQ C6  O2  DOUB N N 34 
XKQ C11 C10 SING N N 35 
XKQ C13 C12 SING N N 36 
XKQ C10 C12 SING N N 37 
XKQ N3  H36 SING N N 38 
XKQ C4  H9  SING N N 39 
XKQ C4  H10 SING N N 40 
XKQ C4  H8  SING N N 41 
XKQ C5  H13 SING N N 42 
XKQ C5  H11 SING N N 43 
XKQ C5  H12 SING N N 44 
XKQ C7  H17 SING N N 45 
XKQ C7  H16 SING N N 46 
XKQ C7  H15 SING N N 47 
XKQ C8  H1  SING N N 48 
XKQ C10 H3  SING N N 49 
XKQ C13 H23 SING N N 50 
XKQ C13 H22 SING N N 51 
XKQ C17 H27 SING N N 52 
XKQ C17 H28 SING N N 53 
XKQ C20 H31 SING N N 54 
XKQ C20 H32 SING N N 55 
XKQ C20 H33 SING N N 56 
XKQ C21 H34 SING N N 57 
XKQ N2  H26 SING N N 58 
XKQ C16 H4  SING N N 59 
XKQ C23 H39 SING N N 60 
XKQ C23 H38 SING N N 61 
XKQ C23 H37 SING N N 62 
XKQ O3  H35 SING N N 63 
XKQ C18 H29 SING N N 64 
XKQ C18 H30 SING N N 65 
XKQ C9  H2  SING N N 66 
XKQ C14 H25 SING N N 67 
XKQ C14 H24 SING N N 68 
XKQ C12 H20 SING N N 69 
XKQ C12 H21 SING N N 70 
XKQ C11 H18 SING N N 71 
XKQ C11 H19 SING N N 72 
XKQ C1  H   SING N N 73 
XKQ C3  H7  SING N N 74 
XKQ C3  H6  SING N N 75 
XKQ C3  H5  SING N N 76 
XKQ N   H14 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XKQ SMILES           ACDLabs              12.01 "CNC(=O)C(O)C(CCC(C)(F)F)NC(=O)C1C2CCCC2CN1C(=O)C(NC(=O)OC)C(C)(C)C"                                                                                                                                                 
XKQ InChI            InChI                1.06  "InChI=1S/C24H40F2N4O6/c1-23(2,3)18(29-22(35)36-6)21(34)30-12-13-8-7-9-14(13)16(30)19(32)28-15(10-11-24(4,25)26)17(31)20(33)27-5/h13-18,31H,7-12H2,1-6H3,(H,27,33)(H,28,32)(H,29,35)/t13-,14-,15-,16-,17+,18+/m0/s1" 
XKQ InChIKey         InChI                1.06  WQJQYHZGBBCHOT-UXJCHEOYSA-N                                                                                                                                                                                          
XKQ SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H](O)[C@H](CCC(C)(F)F)NC(=O)[C@@H]1[C@H]2CCC[C@H]2CN1C(=O)[C@@H](NC(=O)OC)C(C)(C)C"                                                                                                                       
XKQ SMILES           CACTVS               3.385 "CNC(=O)[CH](O)[CH](CCC(C)(F)F)NC(=O)[CH]1[CH]2CCC[CH]2CN1C(=O)[CH](NC(=O)OC)C(C)(C)C"                                                                                                                               
XKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@@H](CCC(C)(F)F)[C@H](C(=O)NC)O)NC(=O)OC"                                                                                                                     
XKQ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(C(=O)N1CC2CCCC2C1C(=O)NC(CCC(C)(F)F)C(C(=O)NC)O)NC(=O)OC"                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XKQ "SYSTEMATIC NAME" ACDLabs              12.01 "methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate (non-preferred name)"                                                              
XKQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{R},3~{S})-6,6-bis(fluoranyl)-1-(methylamino)-2-oxidanyl-1-oxidanylidene-heptan-3-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XKQ "Create component" 2023-11-03 RCSB 
XKQ "Initial release"  2024-03-06 RCSB 
XKQ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XKQ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
