data_VNQ
# 
_chem_comp.id                                    VNQ 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{R})-2,5-bis(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H15 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-01 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        177.198 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VNQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K7K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VNQ CAA C1  C 0 1 N N R N N N 26.902 -18.272 -4.462 -1.189 -0.045 -0.504 CAA VNQ 1  
VNQ CAB C2  C 0 1 N N S N N N 27.871 -19.274 -3.917 -0.385 -1.369 -0.554 CAB VNQ 2  
VNQ CAC C3  C 0 1 N N R N N N 28.974 -18.388 -3.355 1.075  -0.852 -0.466 CAC VNQ 3  
VNQ CAD C4  C 0 1 N N R N N N 28.112 -17.392 -2.591 0.959  0.360  0.482  CAD VNQ 4  
VNQ CAF C5  C 0 1 N N N N N N 25.488 -18.841 -4.530 -2.606 -0.302 0.013  CAF VNQ 5  
VNQ CAI C6  C 0 1 N N N N N N 28.865 -16.093 -2.258 1.883  1.482  0.007  CAI VNQ 6  
VNQ CAL C7  C 0 1 N N N N N N 27.051 -15.909 -4.274 -0.529 2.226  0.047  CAL VNQ 7  
VNQ NAE N1  N 0 1 N N N N N N 26.938 -17.158 -3.490 -0.444 0.813  0.441  NAE VNQ 8  
VNQ OAG O1  O 0 1 N N N N N N 27.242 -20.024 -2.835 -0.702 -2.202 0.563  OAG VNQ 9  
VNQ OAH O2  O 0 1 N N N N N N 29.855 -19.139 -2.496 1.931  -1.851 0.093  OAH VNQ 10 
VNQ OAJ O3  O 0 1 N N N N N N 24.652 -17.838 -5.140 -3.365 0.907  -0.059 OAJ VNQ 11 
VNQ OAK O4  O 0 1 N N N N N N 29.843 -16.348 -1.233 3.224  0.995  -0.070 OAK VNQ 12 
VNQ H1  H1  H 0 1 N N N N N N 27.220 -17.931 -5.458 -1.222 0.416  -1.491 H1  VNQ 13 
VNQ H2  H2  H 0 1 N N N N N N 28.257 -19.934 -4.708 -0.558 -1.895 -1.493 H2  VNQ 14 
VNQ H3  H3  H 0 1 N N N N N N 29.521 -17.886 -4.167 1.433  -0.541 -1.447 H3  VNQ 15 
VNQ H4  H4  H 0 1 N N N N N N 27.770 -17.856 -1.654 1.225  0.064  1.496  H4  VNQ 16 
VNQ H5  H5  H 0 1 N N N N N N 25.125 -19.069 -3.517 -3.083 -1.067 -0.599 H5  VNQ 17 
VNQ H6  H6  H 0 1 N N N N N N 25.480 -19.758 -5.137 -2.559 -0.641 1.048  H6  VNQ 18 
VNQ H7  H7  H 0 1 N N N N N N 29.371 -15.722 -3.162 1.563  1.824  -0.977 H7  VNQ 19 
VNQ H8  H8  H 0 1 N N N N N N 28.150 -15.337 -1.901 1.838  2.313  0.712  H8  VNQ 20 
VNQ H9  H9  H 0 1 N N N N N N 27.081 -15.048 -3.590 -1.566 2.556  0.099  H9  VNQ 21 
VNQ H10 H10 H 0 1 N N N N N N 27.973 -15.934 -4.873 0.079  2.829  0.723  H10 VNQ 22 
VNQ H11 H11 H 0 1 N N N N N N 26.182 -15.816 -4.942 -0.161 2.342  -0.972 H11 VNQ 23 
VNQ H13 H13 H 0 1 N N N N N N 27.858 -20.660 -2.490 -0.223 -3.042 0.575  H13 VNQ 24 
VNQ H14 H14 H 0 1 N N N N N N 30.533 -18.566 -2.158 1.979  -2.664 -0.428 H14 VNQ 25 
VNQ H15 H15 H 0 1 N N N N N N 23.760 -18.161 -5.198 -4.276 0.818  0.254  H15 VNQ 26 
VNQ H16 H16 H 0 1 N N N N N N 30.306 -15.544 -1.030 3.866  1.655  -0.366 H16 VNQ 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VNQ OAJ CAF SING N N 1  
VNQ CAF CAA SING N N 2  
VNQ CAA CAB SING N N 3  
VNQ CAA NAE SING N N 4  
VNQ CAL NAE SING N N 5  
VNQ CAB CAC SING N N 6  
VNQ CAB OAG SING N N 7  
VNQ NAE CAD SING N N 8  
VNQ CAC CAD SING N N 9  
VNQ CAC OAH SING N N 10 
VNQ CAD CAI SING N N 11 
VNQ CAI OAK SING N N 12 
VNQ CAA H1  SING N N 13 
VNQ CAB H2  SING N N 14 
VNQ CAC H3  SING N N 15 
VNQ CAD H4  SING N N 16 
VNQ CAF H5  SING N N 17 
VNQ CAF H6  SING N N 18 
VNQ CAI H7  SING N N 19 
VNQ CAI H8  SING N N 20 
VNQ CAL H9  SING N N 21 
VNQ CAL H10 SING N N 22 
VNQ CAL H11 SING N N 23 
VNQ OAG H13 SING N N 24 
VNQ OAH H14 SING N N 25 
VNQ OAJ H15 SING N N 26 
VNQ OAK H16 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VNQ InChI            InChI                1.06  "InChI=1S/C7H15NO4/c1-8-4(2-9)6(11)7(12)5(8)3-10/h4-7,9-12H,2-3H2,1H3/t4-,5-,6-,7+/m1/s1" 
VNQ InChIKey         InChI                1.06  YWBPEHFIHKFMMC-GBNDHIKLSA-N                                                               
VNQ SMILES_CANONICAL CACTVS               3.385 "CN1[C@H](CO)[C@H](O)[C@H](O)[C@H]1CO"                                                    
VNQ SMILES           CACTVS               3.385 "CN1[CH](CO)[CH](O)[CH](O)[CH]1CO"                                                        
VNQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]([C@H]([C@H]([C@H]1CO)O)O)CO"                                                   
VNQ SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C(C(C(C1CO)O)O)CO"                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           VNQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2,5-bis(hydroxymethyl)-1-methyl-pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VNQ "Create component" 2023-08-01 PDBJ 
VNQ "Initial release"  2024-04-10 RCSB 
# 
