data_VAQ
#

_chem_comp.id                                   VAQ
_chem_comp.name                                 "4-[[(3S)-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-2-oxidanyl-N-[[(3R)-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C34 H42 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-04
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       582.736
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VAQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OEK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VAQ  C10  C1   C  0  1  N  N  N  43.417  -28.530  21.264   -6.859   0.465   0.780  C10  VAQ   1  
VAQ  C13  C2   C  0  1  N  N  N  41.274  -25.995  20.744   -8.769  -0.648  -1.882  C13  VAQ   2  
VAQ  C15  C3   C  0  1  N  N  N  40.669  -26.346  19.380   -8.804   0.797  -2.386  C15  VAQ   3  
VAQ  C17  C4   C  0  1  N  N  N  42.150  -24.919  23.602   -8.258  -3.437  -1.049  C17  VAQ   4  
VAQ  C20  C5   C  0  1  N  N  N  43.738  -26.795  22.952   -7.229  -1.936   0.897  C20  VAQ   5  
VAQ  C21  C6   C  0  1  Y  N  N  42.778  -30.407  22.820   -4.732   0.134   2.050  C21  VAQ   6  
VAQ  C22  C7   C  0  1  Y  N  N  43.082  -31.382  23.791   -3.367   0.318   2.214  C22  VAQ   7  
VAQ  C26  C8   C  0  1  N  N  N  45.033  -37.197  24.624    1.764   0.935  -1.884  C26  VAQ   8  
VAQ  C28  C9   C  0  1  N  N  N  42.777  -35.873  25.964    2.995   3.096  -0.399  C28  VAQ   9  
VAQ  C02  C10  C  0  1  N  N  R  44.256  -35.739  26.521    1.472   2.991  -0.500  C02  VAQ  10  
VAQ  C03  C11  C  0  1  N  N  N  44.405  -34.304  27.192    0.938   2.162   0.669  C03  VAQ  11  
VAQ  C05  C12  C  0  1  N  N  N  44.872  -32.589  25.314   -1.194   1.255   1.425  C05  VAQ  12  
VAQ  C06  C13  C  0  1  Y  N  N  44.458  -31.534  24.257   -2.646   1.053   1.262  C06  VAQ  13  
VAQ  C07  C14  C  0  1  Y  N  N  45.441  -30.698  23.684   -3.311   1.592   0.158  C07  VAQ  14  
VAQ  C08  C15  C  0  1  Y  N  N  45.143  -29.728  22.710   -4.668   1.400   0.012  C08  VAQ  15  
VAQ  C09  C16  C  0  1  Y  N  N  43.808  -29.594  22.277   -5.375   0.668   0.951  C09  VAQ  16  
VAQ  C12  C17  C  0  1  N  N  S  42.667  -26.180  21.226   -8.523  -0.869  -0.389  C12  VAQ  17  
VAQ  C14  C18  C  0  1  N  N  N  40.864  -24.900  19.784  -10.100  -0.013  -2.292  C14  VAQ  18  
VAQ  C16  C19  C  0  1  N  N  N  43.083  -25.484  22.531   -8.404  -2.342   0.006  C16  VAQ  19  
VAQ  C18  C20  C  0  1  N  N  N  42.831  -23.544  23.402   -9.756  -3.722  -0.838  C18  VAQ  20  
VAQ  C19  C21  C  0  1  N  N  N  43.850  -24.151  22.405   -9.598  -3.112   0.569  C19  VAQ  21  
VAQ  C25  C22  C  0  1  N  N  N  45.212  -35.869  25.350    1.098   2.312  -1.821  C25  VAQ  22  
VAQ  C27  C23  C  0  1  N  N  N  43.531  -37.493  24.204    3.279   1.099  -1.742  C27  VAQ  23  
VAQ  C30  C24  C  0  1  Y  N  N  41.468  -38.199  25.832    4.952   1.799  -0.243  C30  VAQ  24  
VAQ  C32  C25  C  0  1  Y  N  N  40.120  -39.069  27.545    6.860   3.015   0.198  C32  VAQ  25  
VAQ  C34  C26  C  0  1  Y  N  N  39.898  -40.111  25.426    7.077   0.731  -0.018  C34  VAQ  26  
VAQ  C36  C27  C  0  1  N  N  N  39.698  -41.484  23.092    7.277  -1.719  -0.254  C36  VAQ  27  
VAQ  C37  C28  C  0  1  Y  N  N  41.107  -42.364  22.837    8.350  -2.776  -0.197  C37  VAQ  28  
VAQ  C38  C29  C  0  1  Y  N  N  41.900  -42.772  23.945    8.653  -3.389   1.004  C38  VAQ  29  
VAQ  C39  C30  C  0  1  Y  N  N  43.096  -43.522  23.793    9.637  -4.358   1.056  C39  VAQ  30  
VAQ  C40  C31  C  0  1  Y  N  N  43.526  -43.893  22.508   10.319  -4.714  -0.092  C40  VAQ  31  
VAQ  C41  C32  C  0  1  Y  N  N  42.762  -43.523  21.385   10.016  -4.100  -1.293  C41  VAQ  32  
VAQ  C42  C33  C  0  1  Y  N  N  41.578  -42.769  21.554    9.028  -3.136  -1.347  C42  VAQ  33  
VAQ  C43  C34  C  0  1  Y  N  N  40.881  -39.161  24.947    5.709   0.631  -0.249  C43  VAQ  34  
VAQ  N04  N1   N  0  1  N  N  N  43.976  -33.261  26.223   -0.505   1.962   0.508  N04  VAQ  35  
VAQ  N11  N2   N  0  1  N  N  N  42.728  -27.477  22.037   -7.098  -0.760   0.005  N11  VAQ  36  
VAQ  N29  N3   N  0  1  N  N  N  42.493  -37.202  25.306    3.585   1.753  -0.463  N29  VAQ  37  
VAQ  N31  N4   N  0  1  Y  N  N  41.061  -38.169  27.132    5.561   2.962  -0.017  N31  VAQ  38  
VAQ  N33  N5   N  0  1  Y  N  N  39.539  -40.018  26.746    7.610   1.932   0.200  N33  VAQ  39  
VAQ  N35  N6   N  0  1  N  N  N  39.318  -41.107  24.530    7.874  -0.403  -0.014  N35  VAQ  40  
VAQ  O01  O1   O  0  1  N  N  N  44.531  -36.750  27.421    0.900   4.300  -0.457  O01  VAQ  41  
VAQ  O23  O2   O  0  1  N  N  N  42.095  -32.201  24.338   -2.733  -0.210   3.290  O23  VAQ  42  
VAQ  O24  O3   O  0  1  N  N  N  46.065  -32.907  25.420   -0.619   0.783   2.387  O24  VAQ  43  
VAQ  H1   H1   H  0  1  N  N  N  42.742  -28.952  20.505   -7.328   0.373   1.759  H1   VAQ  44  
VAQ  H2   H2   H  0  1  N  N  N  44.312  -28.121  20.772   -7.284   1.318   0.252  H2   VAQ  45  
VAQ  H3   H3   H  0  1  N  N  N  40.538  -26.121  21.552   -8.346  -1.402  -2.546  H3   VAQ  46  
VAQ  H4   H4   H  0  1  N  N  N  39.656  -26.769  19.319   -8.651   1.589  -1.654  H4   VAQ  47  
VAQ  H5   H5   H  0  1  N  N  N  41.299  -26.789  18.595   -8.404   0.992  -3.381  H5   VAQ  48  
VAQ  H6   H6   H  0  1  N  N  N  41.083  -24.942  23.336   -8.021  -3.058  -2.043  H6   VAQ  49  
VAQ  H7   H7   H  0  1  N  N  N  42.288  -25.355  24.603   -7.609  -4.257  -0.742  H7   VAQ  50  
VAQ  H8   H8   H  0  1  N  N  N  43.637  -27.042  24.019   -7.517  -1.684   1.918  H8   VAQ  51  
VAQ  H9   H9   H  0  1  N  N  N  44.789  -26.907  22.647   -6.383  -2.622   0.850  H9   VAQ  52  
VAQ  H10  H10  H  0  1  N  N  N  41.759  -30.278  22.488   -5.291  -0.431   2.781  H10  VAQ  53  
VAQ  H11  H11  H  0  1  N  N  N  45.374  -38.005  25.288    1.388   0.312  -1.072  H11  VAQ  54  
VAQ  H12  H12  H  0  1  N  N  N  45.652  -37.183  23.715    1.536   0.464  -2.840  H12  VAQ  55  
VAQ  H13  H13  H  0  1  N  N  N  42.612  -35.077  25.223    3.373   3.698  -1.224  H13  VAQ  56  
VAQ  H14  H14  H  0  1  N  N  N  42.077  -35.745  26.803    3.265   3.566   0.547  H14  VAQ  57  
VAQ  H15  H15  H  0  1  N  N  N  45.456  -34.136  27.471    1.439   1.194   0.688  H15  VAQ  58  
VAQ  H16  H16  H  0  1  N  N  N  43.774  -34.252  28.091    1.128   2.688   1.605  H16  VAQ  59  
VAQ  H17  H17  H  0  1  N  N  N  46.466  -30.808  24.007   -2.762   2.159  -0.579  H17  VAQ  60  
VAQ  H18  H18  H  0  1  N  N  N  45.921  -29.099  22.302   -5.181   1.817  -0.842  H18  VAQ  61  
VAQ  H19  H19  H  0  1  N  N  N  43.430  -26.120  20.436   -9.200  -0.295   0.244  H19  VAQ  62  
VAQ  H20  H20  H  0  1  N  N  N  41.634  -24.291  19.287  -10.552  -0.349  -3.225  H20  VAQ  63  
VAQ  H21  H21  H  0  1  N  N  N  39.990  -24.272  20.011  -10.799   0.248  -1.498  H21  VAQ  64  
VAQ  H22  H22  H  0  1  N  N  N  43.291  -23.140  24.316  -10.407  -3.144  -1.493  H22  VAQ  65  
VAQ  H23  H23  H  0  1  N  N  N  42.173  -22.784  22.956  -10.001  -4.785  -0.829  H23  VAQ  66  
VAQ  H24  H24  H  0  1  N  N  N  44.887  -24.182  22.772   -9.327  -3.841   1.333  H24  VAQ  67  
VAQ  H25  H25  H  0  1  N  N  N  43.830  -23.704  21.400  -10.429  -2.473   0.866  H25  VAQ  68  
VAQ  H26  H26  H  0  1  N  N  N  46.245  -35.803  25.723    1.445   2.923  -2.655  H26  VAQ  69  
VAQ  H27  H27  H  0  1  N  N  N  45.024  -35.048  24.643    0.016   2.197  -1.878  H27  VAQ  70  
VAQ  H28  H28  H  0  1  N  N  N  43.289  -36.870  23.330    3.755   0.119  -1.772  H28  VAQ  71  
VAQ  H29  H29  H  0  1  N  N  N  43.453  -38.555  23.930    3.656   1.711  -2.562  H29  VAQ  72  
VAQ  H30  H30  H  0  1  N  N  N  39.811  -39.029  28.579    7.323   3.974   0.377  H30  VAQ  73  
VAQ  H31  H31  H  0  1  N  N  N  39.794  -40.546  22.526    6.808  -1.731  -1.238  H31  VAQ  74  
VAQ  H32  H32  H  0  1  N  N  N  38.867  -42.076  22.682    6.526  -1.923   0.509  H32  VAQ  75  
VAQ  H33  H33  H  0  1  N  N  N  41.580  -42.501  24.940    8.120  -3.112   1.902  H33  VAQ  76  
VAQ  H34  H34  H  0  1  N  N  N  43.672  -43.806  24.661    9.874  -4.838   1.995  H34  VAQ  77  
VAQ  H35  H35  H  0  1  N  N  N  44.437  -44.459  22.382   11.089  -5.470  -0.051  H35  VAQ  78  
VAQ  H36  H36  H  0  1  N  N  N  43.080  -43.815  20.395   10.546  -4.381  -2.192  H36  VAQ  79  
VAQ  H37  H37  H  0  1  N  N  N  41.010  -42.490  20.679    8.791  -2.656  -2.286  H37  VAQ  80  
VAQ  H38  H38  H  0  1  N  N  N  41.176  -39.178  23.908    5.246  -0.328  -0.429  H38  VAQ  81  
VAQ  H39  H39  H  0  1  N  N  N  43.008  -33.010  26.200   -0.964   2.338  -0.260  H39  VAQ  82  
VAQ  H41  H41  H  0  1  N  N  N  38.355  -40.846  24.467    8.827  -0.326   0.149  H41  VAQ  83  
VAQ  H42  H42  H  0  1  N  N  N  43.941  -36.684  28.162   -0.065   4.310  -0.517  H42  VAQ  84  
VAQ  H43  H43  H  0  1  N  N  N  42.487  -32.791  24.971   -2.394  -1.104   3.148  H43  VAQ  85  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VAQ  C15  C14  SING  N  N   1  
VAQ  C15  C13  SING  N  N   2  
VAQ  C14  C13  SING  N  N   3  
VAQ  C13  C12  SING  N  N   4  
VAQ  C12  N11  SING  N  N   5  
VAQ  C12  C16  SING  N  N   6  
VAQ  C10  N11  SING  N  N   7  
VAQ  C10  C09  SING  N  N   8  
VAQ  C41  C42  DOUB  Y  N   9  
VAQ  C41  C40  SING  Y  N  10  
VAQ  C42  C37  SING  Y  N  11  
VAQ  N11  C20  SING  N  N  12  
VAQ  C09  C08  DOUB  Y  N  13  
VAQ  C09  C21  SING  Y  N  14  
VAQ  C19  C16  SING  N  N  15  
VAQ  C19  C18  SING  N  N  16  
VAQ  C40  C39  DOUB  Y  N  17  
VAQ  C16  C20  SING  N  N  18  
VAQ  C16  C17  SING  N  N  19  
VAQ  C08  C07  SING  Y  N  20  
VAQ  C21  C22  DOUB  Y  N  21  
VAQ  C37  C36  SING  N  N  22  
VAQ  C37  C38  DOUB  Y  N  23  
VAQ  C36  N35  SING  N  N  24  
VAQ  C18  C17  SING  N  N  25  
VAQ  C07  C06  DOUB  Y  N  26  
VAQ  C22  C06  SING  Y  N  27  
VAQ  C22  O23  SING  N  N  28  
VAQ  C39  C38  SING  Y  N  29  
VAQ  C27  C26  SING  N  N  30  
VAQ  C27  N29  SING  N  N  31  
VAQ  C06  C05  SING  N  N  32  
VAQ  N35  C34  SING  N  N  33  
VAQ  C26  C25  SING  N  N  34  
VAQ  C43  C34  DOUB  Y  N  35  
VAQ  C43  C30  SING  Y  N  36  
VAQ  N29  C30  SING  N  N  37  
VAQ  N29  C28  SING  N  N  38  
VAQ  C05  O24  DOUB  N  N  39  
VAQ  C05  N04  SING  N  N  40  
VAQ  C25  C02  SING  N  N  41  
VAQ  C34  N33  SING  Y  N  42  
VAQ  C30  N31  DOUB  Y  N  43  
VAQ  C28  C02  SING  N  N  44  
VAQ  N04  C03  SING  N  N  45  
VAQ  C02  C03  SING  N  N  46  
VAQ  C02  O01  SING  N  N  47  
VAQ  N33  C32  DOUB  Y  N  48  
VAQ  N31  C32  SING  Y  N  49  
VAQ  C10  H1   SING  N  N  50  
VAQ  C10  H2   SING  N  N  51  
VAQ  C13  H3   SING  N  N  52  
VAQ  C15  H4   SING  N  N  53  
VAQ  C15  H5   SING  N  N  54  
VAQ  C17  H6   SING  N  N  55  
VAQ  C17  H7   SING  N  N  56  
VAQ  C20  H8   SING  N  N  57  
VAQ  C20  H9   SING  N  N  58  
VAQ  C21  H10  SING  N  N  59  
VAQ  C26  H11  SING  N  N  60  
VAQ  C26  H12  SING  N  N  61  
VAQ  C28  H13  SING  N  N  62  
VAQ  C28  H14  SING  N  N  63  
VAQ  C03  H15  SING  N  N  64  
VAQ  C03  H16  SING  N  N  65  
VAQ  C07  H17  SING  N  N  66  
VAQ  C08  H18  SING  N  N  67  
VAQ  C12  H19  SING  N  N  68  
VAQ  C14  H20  SING  N  N  69  
VAQ  C14  H21  SING  N  N  70  
VAQ  C18  H22  SING  N  N  71  
VAQ  C18  H23  SING  N  N  72  
VAQ  C19  H24  SING  N  N  73  
VAQ  C19  H25  SING  N  N  74  
VAQ  C25  H26  SING  N  N  75  
VAQ  C25  H27  SING  N  N  76  
VAQ  C27  H28  SING  N  N  77  
VAQ  C27  H29  SING  N  N  78  
VAQ  C32  H30  SING  N  N  79  
VAQ  C36  H31  SING  N  N  80  
VAQ  C36  H32  SING  N  N  81  
VAQ  C38  H33  SING  N  N  82  
VAQ  C39  H34  SING  N  N  83  
VAQ  C40  H35  SING  N  N  84  
VAQ  C41  H36  SING  N  N  85  
VAQ  C42  H37  SING  N  N  86  
VAQ  C43  H38  SING  N  N  87  
VAQ  N04  H39  SING  N  N  88  
VAQ  N35  H41  SING  N  N  89  
VAQ  O01  H42  SING  N  N  90  
VAQ  O23  H43  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VAQ  InChI             InChI                 1.03     "InChI=1S/C34H42N6O3/c41-28-16-25(19-40-21-33(12-4-13-33)31(40)26-9-10-26)8-11-27(28)32(42)36-20-34(43)14-5-15-39(22-34)30-17-29(37-23-38-30)35-18-24-6-2-1-3-7-24/h1-3,6-8,11,16-17,23,26,31,41,43H,4-5,9-10,12-15,18-22H2,(H,36,42)(H,35,37,38)/t31-,34+/m0/s1"  
VAQ  InChIKey          InChI                 1.03     SVGIQPUADMIIMK-AFPLUKJUSA-N  
VAQ  SMILES_CANONICAL  CACTVS                3.385    "Oc1cc(CN2CC3(CCC3)[C@@H]2C4CC4)ccc1C(=O)NC[C@]5(O)CCCN(C5)c6cc(NCc7ccccc7)ncn6"  
VAQ  SMILES            CACTVS                3.385    "Oc1cc(CN2CC3(CCC3)[CH]2C4CC4)ccc1C(=O)NC[C]5(O)CCCN(C5)c6cc(NCc7ccccc7)ncn6"  
VAQ  SMILES_CANONICAL  "OpenEye OEToolkits"  3.1.0.0  "c1ccc(cc1)CNc2cc(ncn2)N3CCC[C@](C3)(CNC(=O)c4ccc(cc4O)CN5CC6([C@@H]5C7CC7)CCC6)O"  
VAQ  SMILES            "OpenEye OEToolkits"  3.1.0.0  "c1ccc(cc1)CNc2cc(ncn2)N3CCCC(C3)(CNC(=O)c4ccc(cc4O)CN5CC6(C5C7CC7)CCC6)O"  
#
_pdbx_chem_comp_identifier.comp_id          VAQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  3.1.0.0
_pdbx_chem_comp_identifier.identifier       "4-[[(3~{S})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-2-oxidanyl-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VAQ  "Create component"  2021-05-04  PDBE  
VAQ  "Modify name"       2021-10-02  PDBE  
VAQ  "Initial release"   2021-10-20  RCSB  
##
