data_S7Q
# 
_chem_comp.id                                    S7Q 
_chem_comp.name                                  "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H33 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         zVAM.fmk 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        451.580 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S7Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ARA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S7Q C10 C1  C 0 1 N N N N N N -51.271 6.816  -12.924 -2.186 -1.263 2.132  C10 S7Q 1  
S7Q C20 C2  C 0 1 Y N N N N N -41.668 5.626  -13.345 7.302  0.933  -0.434 C20 S7Q 2  
S7Q C21 C3  C 0 1 Y N N N N N -40.428 5.732  -12.675 8.217  0.212  0.310  C21 S7Q 3  
S7Q C22 C4  C 0 1 Y N N N N N -39.275 6.020  -13.404 9.272  0.859  0.925  C22 S7Q 4  
S7Q C24 C5  C 0 1 Y N N N N N -40.595 6.093  -15.440 8.500  2.949  0.050  C24 S7Q 5  
S7Q C26 C6  C 0 1 N N N N N N -48.073 4.204  -15.225 1.689  -2.648 -0.099 C26 S7Q 6  
S7Q C28 C7  C 0 1 N N N N N N -48.808 4.819  -16.413 1.843  -2.911 1.401  C28 S7Q 7  
S7Q C01 C8  C 0 1 N N N N N N -48.259 7.924  -9.907  -6.566 4.839  -0.333 C01 S7Q 8  
S7Q C03 C9  C 0 1 N N N N N N -49.655 10.305 -10.753 -6.134 2.033  -0.344 C03 S7Q 9  
S7Q C04 C10 C 0 1 N N N N N N -51.077 10.109 -11.331 -6.667 0.637  -0.015 C04 S7Q 10 
S7Q C05 C11 C 0 1 N N R N N N -51.210 10.932 -12.615 -5.627 -0.413 -0.411 C05 S7Q 11 
S7Q C07 C12 C 0 1 N N N N N N -50.700 8.866  -14.307 -3.234 -0.675 -0.037 C07 S7Q 12 
S7Q C09 C13 C 0 1 N N R N N N -50.134 7.738  -13.375 -2.001 -0.508 0.814  C09 S7Q 13 
S7Q C12 C14 C 0 1 N N N N N N -48.343 5.985  -13.536 0.396  -0.588 0.388  C12 S7Q 14 
S7Q C14 C15 C 0 1 N N S N N N -47.322 5.221  -14.406 1.592  -1.141 -0.345 C14 S7Q 15 
S7Q C16 C16 C 0 1 N N N N N N -44.874 4.554  -13.815 3.898  -0.414 -0.647 C16 S7Q 16 
S7Q C19 C17 C 0 1 N N N N N N -42.946 5.308  -12.573 6.151  0.227  -1.103 C19 S7Q 17 
S7Q C23 C18 C 0 1 Y N N N N N -39.354 6.197  -14.774 9.413  2.228  0.794  C23 S7Q 18 
S7Q C25 C19 C 0 1 Y N N N N N -41.747 5.804  -14.712 7.441  2.303  -0.560 C25 S7Q 19 
S7Q C27 C20 C 0 1 N N N N N N -47.156 3.050  -15.651 2.903  -3.208 -0.842 C27 S7Q 20 
S7Q C29 C21 C 0 1 N N N N N N -52.495 11.762 -12.567 -6.199 -1.791 -0.201 C29 S7Q 21 
S7Q C30 C22 C 0 1 N N N N N N -52.485 13.128 -13.268 -7.132 -2.384 -1.226 C30 S7Q 22 
S7Q N06 N1  N 0 1 N N N N N N -51.161 10.229 -13.896 -4.429 -0.250 0.417  N06 S7Q 23 
S7Q N11 N2  N 0 1 N N N N N N -49.146 6.997  -14.130 -0.839 -1.045 0.102  N11 S7Q 24 
S7Q N15 N3  N 0 1 N N N N N N -46.345 4.545  -13.537 2.809  -0.486 0.143  N15 S7Q 25 
S7Q O08 O1  O 0 1 N N N N N N -50.788 8.585  -15.500 -3.149 -1.192 -1.131 O08 S7Q 26 
S7Q O13 O2  O 0 1 N N N N N N -48.454 5.699  -12.365 0.546  0.268  1.234  O13 S7Q 27 
S7Q O17 O3  O 0 1 N N N N N N -44.344 3.586  -14.368 3.871  -0.892 -1.764 O17 S7Q 28 
S7Q O18 O4  O 0 1 N N N N N N -44.054 5.674  -13.429 5.016  0.187  -0.198 O18 S7Q 29 
S7Q O31 O5  O 0 1 N N N N N N -53.487 11.363 -12.001 -5.910 -2.421 0.788  O31 S7Q 30 
S7Q S02 S1  S 0 1 N N N N N N -49.447 9.170  -9.415  -7.367 3.277  0.126  S02 S7Q 31 
S7Q H1  H1  H 0 1 N N N N N N -50.868 6.028  -12.271 -2.344 -2.322 1.925  H1  S7Q 32 
S7Q H2  H2  H 0 1 N N N N N N -52.020 7.402  -12.371 -1.295 -1.143 2.748  H2  S7Q 33 
S7Q H3  H3  H 0 1 N N N N N N -51.742 6.356  -13.806 -3.051 -0.864 2.662  H3  S7Q 34 
S7Q H4  H4  H 0 1 N N N N N N -40.374 5.591  -11.606 8.106  -0.858 0.413  H4  S7Q 35 
S7Q H5  H5  H 0 1 N N N N N N -38.323 6.105  -12.901 9.986  0.295  1.507  H5  S7Q 36 
S7Q H6  H6  H 0 1 N N N N N N -40.651 6.237  -16.509 8.610  4.019  -0.052 H6  S7Q 37 
S7Q H7  H7  H 0 1 N N N N N N -48.841 3.769  -14.569 0.784  -3.134 -0.462 H7  S7Q 38 
S7Q H8  H8  H 0 1 N N N N N N -49.451 5.639  -16.062 0.979  -2.511 1.930  H8  S7Q 39 
S7Q H9  H9  H 0 1 N N N N N N -48.076 5.211  -17.134 1.913  -3.984 1.576  H9  S7Q 40 
S7Q H10 H10 H 0 1 N N N N N N -49.427 4.050  -16.899 2.749  -2.424 1.764  H10 S7Q 41 
S7Q H11 H11 H 0 1 N N N N N N -48.117 7.207  -9.085  -7.227 5.671  -0.092 H11 S7Q 42 
S7Q H12 H12 H 0 1 N N N N N N -48.631 7.393  -10.796 -5.633 4.945  0.219  H12 S7Q 43 
S7Q H13 H13 H 0 1 N N N N N N -47.299 8.406  -10.143 -6.357 4.839  -1.403 H13 S7Q 44 
S7Q H14 H14 H 0 1 N N N N N N -48.905 10.105 -11.532 -5.211 2.209  0.209  H14 S7Q 45 
S7Q H15 H15 H 0 1 N N N N N N -49.539 11.336 -10.389 -5.936 2.103  -1.413 H15 S7Q 46 
S7Q H16 H16 H 0 1 N N N N N N -51.823 10.447 -10.597 -6.865 0.566  1.055  H16 S7Q 47 
S7Q H17 H17 H 0 1 N N N N N N -51.240 9.045  -11.556 -7.590 0.461  -0.567 H17 S7Q 48 
S7Q H18 H18 H 0 1 N N N N N N -50.377 11.651 -12.609 -5.363 -0.285 -1.461 H18 S7Q 49 
S7Q H19 H19 H 0 1 N N N N N N -49.673 8.205  -12.492 -1.844 0.550  1.021  H19 S7Q 50 
S7Q H20 H20 H 0 1 N N N N N N -46.811 5.931  -15.073 1.482  -0.953 -1.413 H20 S7Q 51 
S7Q H21 H21 H 0 1 N N N N N N -42.980 5.890  -11.640 5.873  0.764  -2.010 H21 S7Q 52 
S7Q H22 H22 H 0 1 N N N N N N -42.989 4.234  -12.337 6.448  -0.790 -1.360 H22 S7Q 53 
S7Q H23 H23 H 0 1 N N N N N N -38.460 6.416  -15.338 10.241 2.733  1.271  H23 S7Q 54 
S7Q H24 H24 H 0 1 N N N N N N -42.699 5.719  -15.215 6.726  2.866  -1.142 H24 S7Q 55 
S7Q H25 H25 H 0 1 N N N N N N -46.648 2.638  -14.766 2.972  -4.282 -0.667 H25 S7Q 56 
S7Q H26 H26 H 0 1 N N N N N N -47.756 2.262  -16.129 2.793  -3.021 -1.910 H26 S7Q 57 
S7Q H27 H27 H 0 1 N N N N N N -46.406 3.422  -16.364 3.808  -2.722 -0.479 H27 S7Q 58 
S7Q H28 H28 H 0 1 N N N N N N -53.469 13.607 -13.153 -7.274 -1.674 -2.041 H28 S7Q 59 
S7Q H29 H29 H 0 1 N N N N N N -51.712 13.766 -12.816 -6.704 -3.306 -1.617 H29 S7Q 60 
S7Q H30 H30 H 0 1 N N N N N N -52.267 12.990 -14.337 -8.094 -2.599 -0.760 H30 S7Q 61 
S7Q H31 H31 H 0 1 N N N N N N -51.509 10.774 -14.659 -4.497 0.163  1.292  H31 S7Q 62 
S7Q H32 H32 H 0 1 N N N N N N -49.024 7.204  -15.101 -0.959 -1.730 -0.575 H32 S7Q 63 
S7Q H33 H33 H 0 1 N N N N N N -46.677 4.060  -12.728 2.830  -0.105 1.035  H33 S7Q 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S7Q C28 C26 SING N N 1  
S7Q C27 C26 SING N N 2  
S7Q O08 C07 DOUB N N 3  
S7Q C24 C23 DOUB Y N 4  
S7Q C24 C25 SING Y N 5  
S7Q C26 C14 SING N N 6  
S7Q C23 C22 SING Y N 7  
S7Q C25 C20 DOUB Y N 8  
S7Q C14 N15 SING N N 9  
S7Q C14 C12 SING N N 10 
S7Q O17 C16 DOUB N N 11 
S7Q C07 N06 SING N N 12 
S7Q C07 C09 SING N N 13 
S7Q N11 C12 SING N N 14 
S7Q N11 C09 SING N N 15 
S7Q N06 C05 SING N N 16 
S7Q C16 N15 SING N N 17 
S7Q C16 O18 SING N N 18 
S7Q C12 O13 DOUB N N 19 
S7Q O18 C19 SING N N 20 
S7Q C22 C21 DOUB Y N 21 
S7Q C09 C10 SING N N 22 
S7Q C20 C21 SING Y N 23 
S7Q C20 C19 SING N N 24 
S7Q C30 C29 SING N N 25 
S7Q C05 C29 SING N N 26 
S7Q C05 C04 SING N N 27 
S7Q C29 O31 DOUB N N 28 
S7Q C04 C03 SING N N 29 
S7Q C03 S02 SING N N 30 
S7Q C01 S02 SING N N 31 
S7Q C10 H1  SING N N 32 
S7Q C10 H2  SING N N 33 
S7Q C10 H3  SING N N 34 
S7Q C21 H4  SING N N 35 
S7Q C22 H5  SING N N 36 
S7Q C24 H6  SING N N 37 
S7Q C26 H7  SING N N 38 
S7Q C28 H8  SING N N 39 
S7Q C28 H9  SING N N 40 
S7Q C28 H10 SING N N 41 
S7Q C01 H11 SING N N 42 
S7Q C01 H12 SING N N 43 
S7Q C01 H13 SING N N 44 
S7Q C03 H14 SING N N 45 
S7Q C03 H15 SING N N 46 
S7Q C04 H16 SING N N 47 
S7Q C04 H17 SING N N 48 
S7Q C05 H18 SING N N 49 
S7Q C09 H19 SING N N 50 
S7Q C14 H20 SING N N 51 
S7Q C19 H21 SING N N 52 
S7Q C19 H22 SING N N 53 
S7Q C23 H23 SING N N 54 
S7Q C25 H24 SING N N 55 
S7Q C27 H25 SING N N 56 
S7Q C27 H26 SING N N 57 
S7Q C27 H27 SING N N 58 
S7Q C30 H28 SING N N 59 
S7Q C30 H29 SING N N 60 
S7Q C30 H30 SING N N 61 
S7Q N06 H31 SING N N 62 
S7Q N11 H32 SING N N 63 
S7Q N15 H33 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S7Q InChI            InChI                1.03  "InChI=1S/C22H33N3O5S/c1-14(2)19(25-22(29)30-13-17-9-7-6-8-10-17)21(28)23-15(3)20(27)24-18(16(4)26)11-12-31-5/h6-10,14-15,18-19H,11-13H2,1-5H3,(H,23,28)(H,24,27)(H,25,29)/t15-,18-,19+/m1/s1" 
S7Q InChIKey         InChI                1.03  XQQSDBOJVLTWFC-LZQZEXGQSA-N                                                                                                                                                                    
S7Q SMILES_CANONICAL CACTVS               3.385 "CSCC[C@@H](NC(=O)[C@@H](C)NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(C)=O"                                                                                                                         
S7Q SMILES           CACTVS               3.385 "CSCC[CH](NC(=O)[CH](C)NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(C)=O"                                                                                                                               
S7Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)N[C@H](CCSC)C(=O)C)NC(=O)[C@H](C(C)C)NC(=O)OCc1ccccc1"                                                                                                                            
S7Q SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(C)C(=O)NC(CCSC)C(=O)C)NC(=O)OCc1ccccc1"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           S7Q 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      S7Q 
_pdbx_chem_comp_synonyms.name         zVAM.fmk 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S7Q "Create component" 2020-11-10 PDBE 
S7Q "Modify synonyms"  2020-11-11 PDBE 
S7Q "Modify synonyms"  2021-03-01 PDBE 
S7Q "Initial release"  2021-07-28 RCSB 
S7Q "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S7Q 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C30 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
