data_S5Q
# 
_chem_comp.id                                    S5Q 
_chem_comp.name                                  "FeFe cofactor" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C Fe8 S9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -4 
_chem_comp.pdbx_initial_date                     2022-12-13 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        747.356 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S5Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BOQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S5Q S4B S1  S  -1 1 N N N -13.321 1.578  52.755 -2.713 1.138  1.230  S4B S5Q 1  
S5Q FE8 FE1 FE 0  0 N N N -14.067 1.849  50.550 -3.969 0.050  -0.218 FE8 S5Q 2  
S5Q FE5 FE2 FE 0  0 N N N -15.380 2.305  53.074 -1.178 -0.322 1.519  FE5 S5Q 3  
S5Q S3A S2  S  0  1 N N N -15.865 3.419  54.975 0.187  -1.068 3.064  S3A S5Q 4  
S5Q FE7 FE3 FE 0  0 N N N -14.654 -0.166 52.475 -1.186 1.391  -0.343 FE7 S5Q 5  
S5Q S5A S3  S  0  1 N N N -14.340 -2.054 53.699 0.036  3.229  -0.403 S5A S5Q 6  
S5Q S3B S4  S  -1 1 N N N -15.150 -0.226 50.266 -2.475 0.451  -1.763 S3B S5Q 7  
S5Q FE6 FE4 FE 0  0 N N N -16.749 0.889  51.306 -1.203 -1.095 -0.962 FE6 S5Q 8  
S5Q S2B S5  S  0  1 N N N -18.816 0.244  51.099 0.090  -2.599 -1.915 S2B S5Q 9  
S5Q S1B S6  S  -1 1 N N N -16.044 2.984  51.044 -2.711 -1.566 0.548  S1B S5Q 10 
S5Q CX  C1  C  2  1 N N N -16.375 0.584  53.272 0.154  -0.034 0.096  CX  S5Q 11 
S5Q FE4 FE5 FE 0  0 N N N -16.929 1.473  54.953 1.540  -0.542 1.407  FE4 S5Q 12 
S5Q S1A S7  S  -1 1 N N N -19.227 1.363  54.868 3.021  -1.699 0.298  S1A S5Q 13 
S5Q S4A S8  S  -1 1 N N N -16.198 -0.031 56.558 2.809  1.301  1.383  S4A S5Q 14 
S5Q FE1 FE6 FE 0  0 N N N -18.316 -0.533 55.879 2.746  0.164  -0.213 FE1 S5Q 15 
S5Q FE3 FE7 FE 0  0 N N N -16.147 -0.988 54.496 1.398  1.466  -0.316 FE3 S5Q 16 
S5Q S2A S9  S  -1 1 N N N -18.187 -1.977 54.173 2.465  0.651  -2.063 S2A S5Q 17 
S5Q FE2 FE8 FE 0  0 N N N -18.295 0.093  53.250 1.412  -1.013 -1.113 FE2 S5Q 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S5Q S4B FE8 SING N N 1  
S5Q S4B FE5 SING N N 2  
S5Q S4B FE7 SING N N 3  
S5Q FE8 S3B SING N N 4  
S5Q FE8 S1B SING N N 5  
S5Q FE5 S3A SING N N 6  
S5Q FE5 S1B SING N N 7  
S5Q FE5 CX  SING N N 8  
S5Q S3A FE4 SING N N 9  
S5Q FE7 S5A SING N N 10 
S5Q FE7 S3B SING N N 11 
S5Q FE7 CX  SING N N 12 
S5Q S5A FE3 SING N N 13 
S5Q S3B FE6 SING N N 14 
S5Q FE6 S2B SING N N 15 
S5Q FE6 S1B SING N N 16 
S5Q FE6 CX  SING N N 17 
S5Q S2B FE2 SING N N 18 
S5Q CX  FE4 SING N N 19 
S5Q CX  FE3 SING N N 20 
S5Q CX  FE2 SING N N 21 
S5Q FE4 S1A SING N N 22 
S5Q FE4 S4A SING N N 23 
S5Q S1A FE1 SING N N 24 
S5Q S1A FE2 SING N N 25 
S5Q S4A FE1 SING N N 26 
S5Q S4A FE3 SING N N 27 
S5Q FE1 S2A SING N N 28 
S5Q FE3 S2A SING N N 29 
S5Q S2A FE2 SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S5Q InChI            InChI                1.06    InChI=1S/C.8Fe.9S/q+2;;;;;;;;;;;;6*-1                                                                          
S5Q InChIKey         InChI                1.06    ARHQIUGQOSHZFD-UHFFFAOYSA-N                                                                                    
S5Q SMILES_CANONICAL CACTVS               3.385   "S1[Fe]23[S-]4[Fe]5[S-]2[Fe]67S[Fe]89[S-]%10[Fe]%11[S-]%12[Fe]1%10[C++]368%13[Fe]4(S[Fe]%12%13[S-]9%11)[S-]57" 
S5Q SMILES           CACTVS               3.385   "S1[Fe]23[S-]4[Fe]5[S-]2[Fe]67S[Fe]89[S-]%10[Fe]%11[S-]%12[Fe]1%10[C++]368%13[Fe]4(S[Fe]%12%13[S-]9%11)[S-]57" 
S5Q SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[C+2]12345[Fe]67S[Fe]18[S-]9[Fe]21S[Fe]32[S-]6[Fe]3[S-]7[Fe]4([S-]23)S[Fe]52[S-]8[Fe]9[S-]12"                 
S5Q SMILES           "OpenEye OEToolkits" 3.1.0.0 "[C+2]12345[Fe]67S[Fe]18[S-]9[Fe]21S[Fe]32[S-]6[Fe]3[S-]7[Fe]4([S-]23)S[Fe]52[S-]8[Fe]9[S-]12"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S5Q "Create component" 2022-12-13 PDBE 
S5Q "Initial release"  2023-06-14 RCSB 
# 
