data_RSQ
# 
_chem_comp.id                                    RSQ 
_chem_comp.name                                  
;5-formylcytidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-25 
_chem_comp.pdbx_modified_date                    2016-02-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RSQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KRY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RSQ P      P      P 0 1 N N N 7.999 -8.373  -7.144  4.565  1.248  0.154  P      RSQ 1  
RSQ N1     N1     N 0 1 N N N 4.121 -12.640 -7.516  -1.995 -0.240 0.186  N1     RSQ 2  
RSQ C2     C2     C 0 1 N N N 2.877 -13.260 -7.393  -2.026 0.332  -1.028 C2     RSQ 3  
RSQ O2     O2     O 0 1 N N N 2.301 -13.657 -8.415  -1.070 0.189  -1.770 O2     RSQ 4  
RSQ N3     N3     N 0 1 N N N 2.334 -13.411 -6.167  -3.064 1.051  -1.451 N3     RSQ 5  
RSQ C4     C4     C 0 1 N N N 2.987 -12.977 -5.091  -4.125 1.232  -0.677 C4     RSQ 6  
RSQ N4     N4     N 0 1 N N N 2.407 -13.149 -3.911  -5.193 1.973  -1.117 N4     RSQ 7  
RSQ C5     C5     C 0 1 N N N 4.263 -12.348 -5.179  -4.135 0.624  0.660  C5     RSQ 8  
RSQ C6     C6     C 0 1 N N N 4.784 -12.197 -6.406  -3.025 -0.114 1.046  C6     RSQ 9  
RSQ "C1'"  "C1'"  C 0 1 N N R 4.705 -12.482 -8.858  -0.821 -1.023 0.581  "C1'"  RSQ 10 
RSQ C10    C10    C 0 1 N N N 5.024 -11.873 -4.034  -5.280 0.791  1.558  C10    RSQ 11 
RSQ "C2'"  "C2'"  C 0 1 N N R 4.194 -11.254 -9.612  -0.638 -2.233 -0.362 "C2'"  RSQ 12 
RSQ "O2'"  "O2'"  O 0 1 N N N 4.086 -11.589 -10.983 -1.176 -3.416 0.232  "O2'"  RSQ 13 
RSQ "C3'"  "C3'"  C 0 1 N N S 5.314 -10.247 -9.367  0.893  -2.356 -0.523 "C3'"  RSQ 14 
RSQ "O3'"  "O3'"  O 0 1 N N N 5.392 -9.271  -10.402 1.348  -3.619 -0.033 "O3'"  RSQ 15 
RSQ O30    O30    O 0 1 N N N 4.687 -11.947 -2.888  -6.280 1.356  1.167  O30    RSQ 16 
RSQ "C4'"  "C4'"  C 0 1 N N R 6.558 -11.126 -9.331  1.455  -1.206 0.342  "C4'"  RSQ 17 
RSQ "O4'"  "O4'"  O 0 1 N N N 6.109 -12.363 -8.722  0.383  -0.241 0.415  "O4'"  RSQ 18 
RSQ "C5'"  "C5'"  C 0 1 N N N 7.723 -10.588 -8.531  2.683  -0.586 -0.328 "C5'"  RSQ 19 
RSQ "O5'"  "O5'"  O 0 1 N N N 7.256 -9.742  -7.480  3.256  0.394  0.539  "O5'"  RSQ 20 
RSQ OP1    OP1    O 0 1 N N N 7.689 -7.418  -8.238  4.345  1.934  -1.139 OP1    RSQ 21 
RSQ OP2    OP2    O 0 1 N N N 9.415 -8.685  -6.825  4.848  2.342  1.301  OP2    RSQ 22 
RSQ OP3    O3P    O 0 1 N Y N 7.293 -7.861  -5.790  5.832  0.262  0.029  OP3    RSQ 23 
RSQ H6     H6     H 0 1 N N N 5.745 -11.717 -6.519  -2.987 -0.581 2.019  H6     RSQ 24 
RSQ "H5'"  "H5'"  H 0 1 N N N 8.284 -11.429 -8.097  3.418  -1.365 -0.531 "H5'"  RSQ 25 
RSQ "H1'"  "H1'"  H 0 1 N N N 4.466 -13.374 -9.456  -0.918 -1.356 1.614  "H1'"  RSQ 26 
RSQ "H2'"  "H2'"  H 0 1 N N N 3.244 -10.898 -9.186  -1.109 -2.040 -1.326 "H2'"  RSQ 27 
RSQ "HO2'" "HO2'" H 0 0 N N N 3.769 -10.837 -11.469 -1.089 -4.207 -0.317 "HO2'" RSQ 28 
RSQ H10    H10    H 0 1 N N N 5.979 -11.412 -4.236  -5.234 0.411  2.568  H10    RSQ 29 
RSQ "H3'"  "H3'"  H 0 1 N N N 5.172 -9.770  -8.386  1.180  -2.224 -1.566 "H3'"  RSQ 30 
RSQ "H4'"  "H4'"  H 0 1 N N N 6.889 -11.316 -10.363 1.708  -1.569 1.338  "H4'"  RSQ 31 
RSQ HN4    HN4    H 0 1 N N N 2.865 -12.837 -3.079  -5.995 2.036  -0.575 HN4    RSQ 32 
RSQ HN4A   HN4A   H 0 0 N N N 1.512 -13.591 -3.854  -5.146 2.433  -1.969 HN4A   RSQ 33 
RSQ "H5'A" "H5'A" H 0 0 N N N 8.383 -10.011 -9.195  2.387  -0.114 -1.265 "H5'A" RSQ 34 
RSQ "HO3'" "HO3'" H 0 0 N N N 6.099 -8.665  -10.214 0.978  -4.379 -0.502 "HO3'" RSQ 35 
RSQ HOP2   HOP2   H 0 0 N N N 9.986 -8.196  -7.406  5.625  2.894  1.134  HOP2   RSQ 36 
RSQ HOP3   H3T    H 0 0 N Y N 6.822 -7.054  -5.963  6.035  -0.222 0.841  HOP3   RSQ 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RSQ OP1    P      DOUB N N 1  
RSQ "O5'"  P      SING N N 2  
RSQ P      OP2    SING N N 3  
RSQ P      OP3    SING N N 4  
RSQ "C1'"  N1     SING N N 5  
RSQ N1     C2     SING N N 6  
RSQ N1     C6     SING N N 7  
RSQ O2     C2     DOUB N N 8  
RSQ C2     N3     SING N N 9  
RSQ N3     C4     DOUB N N 10 
RSQ C5     C4     SING N N 11 
RSQ C4     N4     SING N N 12 
RSQ N4     HN4A   SING N N 13 
RSQ N4     HN4    SING N N 14 
RSQ C6     C5     DOUB N N 15 
RSQ C5     C10    SING N N 16 
RSQ H6     C6     SING N N 17 
RSQ "C2'"  "C1'"  SING N N 18 
RSQ "H1'"  "C1'"  SING N N 19 
RSQ "C1'"  "O4'"  SING N N 20 
RSQ H10    C10    SING N N 21 
RSQ C10    O30    DOUB N N 22 
RSQ "O2'"  "C2'"  SING N N 23 
RSQ "C2'"  "C3'"  SING N N 24 
RSQ "C2'"  "H2'"  SING N N 25 
RSQ "HO2'" "O2'"  SING N N 26 
RSQ "O3'"  "C3'"  SING N N 27 
RSQ "C3'"  "C4'"  SING N N 28 
RSQ "C3'"  "H3'"  SING N N 29 
RSQ "O3'"  "HO3'" SING N N 30 
RSQ "H4'"  "C4'"  SING N N 31 
RSQ "C4'"  "O4'"  SING N N 32 
RSQ "C4'"  "C5'"  SING N N 33 
RSQ "H5'"  "C5'"  SING N N 34 
RSQ "C5'"  "H5'A" SING N N 35 
RSQ "C5'"  "O5'"  SING N N 36 
RSQ OP2    HOP2   SING N N 37 
RSQ OP3    HOP3   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RSQ SMILES           ACDLabs              12.01 "P(O)(O)(OCC2C(C(C(N1C(N=C(N)C(C=O)=C1)=O)O2)O)O)=O"                                                                                                        
RSQ InChI            InChI                1.03  "InChI=1S/C10H14N3O9P/c11-8-4(2-14)1-13(10(17)12-8)9-7(16)6(15)5(22-9)3-21-23(18,19)20/h1-2,5-7,9,15-16H,3H2,(H2,11,12,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1" 
RSQ InChIKey         InChI                1.03  ANRZHYHASGTOLD-JXOAFFINSA-N                                                                                                                                 
RSQ SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1C=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"                                                                                          
RSQ SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1C=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"                                                                                                
RSQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)C=O"                                                                                        
RSQ SMILES           "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)C=O"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RSQ "SYSTEMATIC NAME" ACDLabs              12.01 
;5-formylcytidine 5'-(dihydrogen phosphate)
;
RSQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(4-azanyl-5-methanoyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RSQ "Create component"      2010-01-25 RCSB 
RSQ "Modify descriptor"     2011-06-04 RCSB 
RSQ "Modify parent residue" 2016-02-04 RCSB 
# 
