data_QCQ
#

_chem_comp.id                                   QCQ
_chem_comp.name                                 "[[(2~{R},3~{R},4~{S},5~{R})-5-[2-chloranyl-6-[(phenylmethyl)amino]purin-9-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H21 Cl F N5 O8 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       551.787
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QCQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z9B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QCQ  "O3'"  O1   O   0  1  N  N  N  -16.364  16.298  -36.216  -1.878   4.624  -0.481  "O3'"  QCQ   1  
QCQ  "C3'"  C1   C   0  1  N  N  R  -15.904  16.799  -34.966  -1.746   3.304  -1.012  "C3'"  QCQ   2  
QCQ  "C2'"  C2   C   0  1  N  N  S  -14.865  17.896  -35.129  -0.255   2.891  -1.072  "C2'"  QCQ   3  
QCQ  F04    F1   F   0  1  N  N  N  -14.100  17.979  -33.964   0.002   2.111  -2.204  F04    QCQ   4  
QCQ  "C4'"  C3   C   0  1  N  N  R  -17.009  17.489  -34.163  -2.385   2.274  -0.061  "C4'"  QCQ   5  
QCQ  "C5'"  C4   C   0  1  N  N  N  -17.036  17.116  -32.704  -3.509   1.527  -0.782  "C5'"  QCQ   6  
QCQ  "O5'"  O2   O   0  1  N  N  N  -18.083  17.863  -32.058  -4.171   0.658   0.139  "O5'"  QCQ   7  
QCQ  PA     P1   P   0  1  N  N  N  -18.726  17.318  -30.731  -5.408  -0.284  -0.279  PA     QCQ   8  
QCQ  C3A    C5   C   0  1  N  N  N  -17.484  17.569  -29.453  -5.871  -1.340   1.132  C3A    QCQ   9  
QCQ  PB     P2   P   0  1  N  N  N  -16.925  19.262  -29.323  -7.272  -2.407   0.659  PB     QCQ  10  
QCQ  O1B    O3   O   0  1  N  N  N  -16.321  19.668  -30.633  -6.879  -3.258  -0.486  O1B    QCQ  11  
QCQ  O2B    O4   O   0  1  N  N  N  -15.937  19.398  -28.144  -7.681  -3.339   1.906  O2B    QCQ  12  
QCQ  O3B    O5   O   0  1  N  N  N  -18.194  20.065  -28.960  -8.528  -1.489   0.241  O3B    QCQ  13  
QCQ  O1A    O6   O   0  1  N  N  N  -19.914  18.297  -30.464  -6.663   0.633  -0.698  O1A    QCQ  14  
QCQ  O2A    O7   O   0  1  N  N  N  -19.266  15.897  -30.767  -5.015  -1.135  -1.424  O2A    QCQ  15  
QCQ  "O4'"  O8   O   0  1  N  N  N  -16.787  18.913  -34.294  -1.353   1.350   0.324  "O4'"  QCQ  16  
QCQ  "C1'"  C6   C   0  1  N  N  R  -15.728  19.142  -35.201  -0.097   2.055   0.223  "C1'"  QCQ  17  
QCQ  N9     N1   N   0  1  Y  N  N  -15.043  20.376  -34.843   1.016   1.111   0.096  N9     QCQ  18  
QCQ  C8     C7   C   0  1  Y  N  N  -14.851  20.901  -33.592   0.927  -0.194  -0.289  C8     QCQ  19  
QCQ  N7     N2   N   0  1  Y  N  N  -14.186  22.031  -33.583   2.109  -0.738  -0.294  N7     QCQ  20  
QCQ  C5     C8   C   0  1  Y  N  N  -13.925  22.271  -34.925   3.029   0.181   0.087  C5     QCQ  21  
QCQ  C4     C9   C   0  1  Y  N  N  -14.460  21.267  -35.714   2.340   1.379   0.336  C4     QCQ  22  
QCQ  N3     N3   N   0  1  Y  N  N  -14.476  21.228  -37.054   3.024   2.449   0.728  N3     QCQ  23  
QCQ  C2     C10  C   0  1  Y  N  N  -13.912  22.312  -37.563   4.331   2.390   0.883  C2     QCQ  24  
QCQ  CL1    CL1  CL  0  0  N  N  N  -14.033  22.456  -39.298   5.177   3.816   1.398  CL1    QCQ  25  
QCQ  N1     N4   N   0  1  Y  N  N  -13.315  23.332  -36.958   5.022   1.285   0.662  N1     QCQ  26  
QCQ  C6     C11  C   0  1  Y  N  N  -13.297  23.338  -35.610   4.424   0.168   0.261  C6     QCQ  27  
QCQ  N6     N5   N   0  1  N  N  N  -12.745  24.397  -34.980   5.155  -0.984   0.032  N6     QCQ  28  
QCQ  C29    C12  C   0  1  N  N  N  -12.249  24.357  -33.613   6.607  -0.981   0.231  C29    QCQ  29  
QCQ  C30    C13  C   0  1  Y  N  N  -10.942  25.076  -33.388   7.160  -2.347  -0.084  C30    QCQ  30  
QCQ  C31    C14  C   0  1  Y  N  N   -9.731  24.401  -33.512   7.252  -3.302   0.911  C31    QCQ  31  
QCQ  C32    C15  C   0  1  Y  N  N   -8.529  25.053  -33.278   7.759  -4.555   0.623  C32    QCQ  32  
QCQ  C33    C16  C   0  1  Y  N  N   -8.522  26.386  -32.904   8.173  -4.854  -0.662  C33    QCQ  33  
QCQ  C34    C17  C   0  1  Y  N  N   -9.719  27.067  -32.775   8.079  -3.899  -1.658  C34    QCQ  34  
QCQ  C35    C18  C   0  1  Y  N  N  -10.922  26.417  -33.020   7.569  -2.648  -1.370  C35    QCQ  35  
QCQ  H1     H1   H   0  1  N  N  N  -17.009  15.617  -36.067  -1.493   5.313  -1.040  H1     QCQ  36  
QCQ  H2     H2   H   0  1  N  N  N  -15.477  15.986  -34.360  -2.200   3.244  -2.001  H2     QCQ  37  
QCQ  H3     H3   H   0  1  N  N  N  -14.268  17.760  -36.043   0.393   3.768  -1.051  H3     QCQ  38  
QCQ  H4     H4   H   0  1  N  N  N  -17.979  17.227  -34.611  -2.781   2.778   0.820  H4     QCQ  39  
QCQ  H5     H5   H   0  1  N  N  N  -17.232  16.038  -32.601  -4.224   2.246  -1.183  H5     QCQ  40  
QCQ  H6     H6   H   0  1  N  N  N  -16.068  17.359  -32.241  -3.089   0.939  -1.599  H6     QCQ  41  
QCQ  H7     H7   H   0  1  N  N  N  -17.914  17.269  -28.486  -5.022  -1.961   1.416  H7     QCQ  42  
QCQ  H8     H8   H   0  1  N  N  N  -16.616  16.933  -29.681  -6.161  -0.713   1.976  H8     QCQ  43  
QCQ  H9     H9   H   0  1  N  N  N  -15.103  19.722  -28.465  -8.422  -3.934   1.726  H9     QCQ  44  
QCQ  H10    H10  H   0  1  N  N  N  -18.378  20.694  -29.647  -8.839  -0.904   0.945  H10    QCQ  45  
QCQ  H11    H11  H   0  1  N  N  N  -20.720  17.802  -30.381  -6.975   1.219   0.006  H11    QCQ  46  
QCQ  H12    H12  H   0  1  N  N  N  -16.125  19.231  -36.223   0.051   2.706   1.085  H12    QCQ  47  
QCQ  H13    H13  H   0  1  N  N  N  -15.215  20.426  -32.693   0.010  -0.701  -0.552  H13    QCQ  48  
QCQ  H14    H14  H   0  1  N  N  N  -11.967  24.673  -35.544   4.707  -1.793  -0.260  H14    QCQ  49  
QCQ  H15    H15  H   0  1  N  N  N  -13.007  24.815  -32.961   7.063  -0.243  -0.430  H15    QCQ  50  
QCQ  H16    H16  H   0  1  N  N  N  -12.112  23.303  -33.330   6.832  -0.728   1.267  H16    QCQ  51  
QCQ  H17    H17  H   0  1  N  N  N   -9.727  23.358  -33.793   6.929  -3.068   1.915  H17    QCQ  52  
QCQ  H18    H18  H   0  1  N  N  N   -7.596  24.519  -33.388   7.832  -5.300   1.401  H18    QCQ  53  
QCQ  H19    H19  H   0  1  N  N  N   -7.587  26.892  -32.714   8.569  -5.832  -0.888  H19    QCQ  54  
QCQ  H20    H20  H   0  1  N  N  N   -9.718  28.107  -32.483   8.403  -4.133  -2.662  H20    QCQ  55  
QCQ  H21    H21  H   0  1  N  N  N  -11.851  26.959  -32.924   7.492  -1.903  -2.149  H21    QCQ  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QCQ  CL1    C2     SING  N  N   1  
QCQ  C2     N3     DOUB  Y  N   2  
QCQ  C2     N1     SING  Y  N   3  
QCQ  N3     C4     SING  Y  N   4  
QCQ  N1     C6     DOUB  Y  N   5  
QCQ  "O3'"  "C3'"  SING  N  N   6  
QCQ  C4     C5     DOUB  Y  N   7  
QCQ  C4     N9     SING  Y  N   8  
QCQ  C6     N6     SING  N  N   9  
QCQ  C6     C5     SING  Y  N  10  
QCQ  "C1'"  "C2'"  SING  N  N  11  
QCQ  "C1'"  N9     SING  N  N  12  
QCQ  "C1'"  "O4'"  SING  N  N  13  
QCQ  "C2'"  "C3'"  SING  N  N  14  
QCQ  "C2'"  F04    SING  N  N  15  
QCQ  N6     C29    SING  N  N  16  
QCQ  "C3'"  "C4'"  SING  N  N  17  
QCQ  C5     N7     SING  Y  N  18  
QCQ  N9     C8     SING  Y  N  19  
QCQ  "O4'"  "C4'"  SING  N  N  20  
QCQ  "C4'"  "C5'"  SING  N  N  21  
QCQ  C29    C30    SING  N  N  22  
QCQ  C8     N7     DOUB  Y  N  23  
QCQ  C31    C30    DOUB  Y  N  24  
QCQ  C31    C32    SING  Y  N  25  
QCQ  C30    C35    SING  Y  N  26  
QCQ  C32    C33    DOUB  Y  N  27  
QCQ  C35    C34    DOUB  Y  N  28  
QCQ  C33    C34    SING  Y  N  29  
QCQ  "C5'"  "O5'"  SING  N  N  30  
QCQ  "O5'"  PA     SING  N  N  31  
QCQ  O2A    PA     DOUB  N  N  32  
QCQ  PA     O1A    SING  N  N  33  
QCQ  PA     C3A    SING  N  N  34  
QCQ  O1B    PB     DOUB  N  N  35  
QCQ  C3A    PB     SING  N  N  36  
QCQ  PB     O3B    SING  N  N  37  
QCQ  PB     O2B    SING  N  N  38  
QCQ  "O3'"  H1     SING  N  N  39  
QCQ  "C3'"  H2     SING  N  N  40  
QCQ  "C2'"  H3     SING  N  N  41  
QCQ  "C4'"  H4     SING  N  N  42  
QCQ  "C5'"  H5     SING  N  N  43  
QCQ  "C5'"  H6     SING  N  N  44  
QCQ  C3A    H7     SING  N  N  45  
QCQ  C3A    H8     SING  N  N  46  
QCQ  O2B    H9     SING  N  N  47  
QCQ  O3B    H10    SING  N  N  48  
QCQ  O1A    H11    SING  N  N  49  
QCQ  "C1'"  H12    SING  N  N  50  
QCQ  C8     H13    SING  N  N  51  
QCQ  N6     H14    SING  N  N  52  
QCQ  C29    H15    SING  N  N  53  
QCQ  C29    H16    SING  N  N  54  
QCQ  C31    H17    SING  N  N  55  
QCQ  C32    H18    SING  N  N  56  
QCQ  C33    H19    SING  N  N  57  
QCQ  C34    H20    SING  N  N  58  
QCQ  C35    H21    SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QCQ  InChI             InChI                 1.03   "InChI=1S/C18H21ClFN5O8P2/c19-18-23-15(21-6-10-4-2-1-3-5-10)13-16(24-18)25(8-22-13)17-12(20)14(26)11(33-17)7-32-35(30,31)9-34(27,28)29/h1-5,8,11-12,14,17,26H,6-7,9H2,(H,30,31)(H,21,23,24)(H2,27,28,29)/t11-,12+,14-,17-/m1/s1"  
QCQ  InChIKey          InChI                 1.03   PPWDVNAHTXSWKW-DMVWFOPNSA-N  
QCQ  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(=O)C[P](O)(O)=O)n2cnc3c(NCc4ccccc4)nc(Cl)nc23"  
QCQ  SMILES            CACTVS                3.385  "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(=O)C[P](O)(O)=O)n2cnc3c(NCc4ccccc4)nc(Cl)nc23"  
QCQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CNc2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@H]([C@@H]([C@H](O4)COP(=O)(CP(=O)(O)O)O)O)F"  
QCQ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CNc2c3c(nc(n2)Cl)n(cn3)C4C(C(C(O4)COP(=O)(CP(=O)(O)O)O)O)F"  
#
_pdbx_chem_comp_identifier.comp_id          QCQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{R},4~{S},5~{R})-5-[2-chloranyl-6-[(phenylmethyl)amino]purin-9-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QCQ  "Create component"  2020-06-05  PDBE  
QCQ  "Initial release"   2020-07-22  RCSB  
##
