data_QBQ
#

_chem_comp.id                                   QBQ
_chem_comp.name                                 7-deaza-GTP
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N4 O14 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-02
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       522.192
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QBQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z86
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QBQ  O3   O1   O  0  1  N  N  N  44.224  -16.326  -76.781   2.924  -2.897  -0.588  O3   QBQ   1  
QBQ  C4   C1   C  0  1  Y  N  N  38.393  -13.453  -81.546  -3.746   0.756  -1.624  C4   QBQ   2  
QBQ  C5   C2   C  0  1  N  N  R  39.938  -12.330  -79.864  -3.303  -0.699   0.381  C5   QBQ   3  
QBQ  O4   O2   O  0  1  N  N  N  41.959  -16.450  -75.695   3.368  -0.482  -0.001  O4   QBQ   4  
QBQ  C6   C3   C  0  1  N  N  R  41.536  -13.143  -78.453  -1.393  -1.973   0.363  C6   QBQ   5  
QBQ  N1   N1   N  0  1  N  N  N  40.123  -10.420  -82.132  -5.972   0.749   1.163  N1   QBQ   6  
QBQ  C7   C4   C  0  1  N  N  N  42.085  -14.504  -78.141  -0.144  -2.320  -0.450  C7   QBQ   7  
QBQ  C8   C5   C  0  1  N  N  S  40.302  -12.735  -77.628  -2.523  -2.986   0.074  C8   QBQ   8  
QBQ  N2   N2   N  0  1  Y  N  N  39.302  -12.475  -81.171  -4.079   0.284  -0.380  N2   QBQ   9  
QBQ  C9   C6   C  0  1  N  N  R  39.164  -12.814  -78.657  -3.808  -2.128   0.086  C9   QBQ  10  
QBQ  O5   O3   O  0  1  N  N  N  40.037  -17.813  -74.752   5.621  -1.423   0.976  O5   QBQ  11  
QBQ  C10  C7   C  0  1  N  N  N  38.103  -10.885  -84.141  -6.850   2.478  -0.777  C10  QBQ  12  
QBQ  O6   O4   O  0  1  N  N  N  41.728  -16.570  -73.160   5.515  -0.395  -1.326  O6   QBQ  13  
QBQ  N3   N3   N  0  1  N  N  N  38.970   -9.810  -84.119  -7.539   2.302   0.373  N3   QBQ  14  
QBQ  O7   O5   O  0  1  N  N  N  40.138  -15.260  -74.614   5.311   1.166   0.646  O7   QBQ  15  
QBQ  O8   O6   O  0  1  N  N  N  39.355  -13.258  -73.419   6.539   3.190   1.791  O8   QBQ  16  
QBQ  N    N4   N  0  1  N  N  N  40.609   -8.454  -83.219  -7.797   1.282   2.482  N    QBQ  17  
QBQ  C    C8   C  0  1  N  N  N  39.916   -9.593  -83.152  -7.077   1.441   1.324  C    QBQ  18  
QBQ  O    O7   O  0  1  N  N  N  41.127  -13.083  -79.837  -1.925  -0.697  -0.054  O    QBQ  19  
QBQ  C1   C9   C  0  1  Y  N  N  39.303  -11.503  -82.136  -5.238   0.863   0.047  C1   QBQ  20  
QBQ  C2   C10  C  0  1  Y  N  N  38.321  -11.823  -83.079  -5.661   1.738  -0.963  C2   QBQ  21  
QBQ  C3   C11  C  0  1  Y  N  N  37.763  -13.076  -82.698  -4.666   1.647  -2.030  C3   QBQ  22  
QBQ  O1   O8   O  0  1  N  N  N  42.761  -14.341  -76.881   0.923  -1.444  -0.082  O1   QBQ  23  
QBQ  O10  O9   O  0  1  N  N  N  37.758  -14.522  -74.913   7.831   1.304   0.721  O10  QBQ  24  
QBQ  O11  O10  O  0  1  N  N  N  40.456  -11.414  -77.118  -2.576  -3.982   1.097  O11  QBQ  25  
QBQ  O12  O11  O  0  1  N  N  N  38.000  -12.032  -78.373  -4.694  -2.569   1.117  O12  QBQ  26  
QBQ  O13  O12  O  0  1  N  N  N  37.173  -10.927  -84.948  -7.252   3.244  -1.636  O13  QBQ  27  
QBQ  O2   O13  O  0  1  N  N  N  43.674  -14.958  -74.626   2.297  -1.156  -2.305  O2   QBQ  28  
QBQ  O9   O14  O  0  1  N  N  N  38.574  -15.532  -72.699   6.632   2.903  -0.820  O9   QBQ  29  
QBQ  P    P1   P  0  1  N  N  N  43.234  -15.532  -75.971   2.390  -1.525  -0.741  P    QBQ  30  
QBQ  P1   P2   P  0  1  N  N  N  40.977  -16.600  -74.450   4.966  -0.286   0.044  P1   QBQ  31  
QBQ  P2   P3   P  0  1  N  N  N  38.876  -14.617  -73.894   6.605   2.123   0.587  P2   QBQ  32  
QBQ  H7   H1   H  0  1  N  N  N  38.211  -14.372  -81.009  -2.875   0.459  -2.190  H7   QBQ  33  
QBQ  H    H2   H  0  1  N  N  N  40.178  -11.268  -79.708  -3.364  -0.488   1.449  H    QBQ  34  
QBQ  H1   H3   H  0  1  N  N  N  42.326  -12.398  -78.275  -1.160  -1.958   1.428  H1   QBQ  35  
QBQ  H9   H4   H  0  1  N  N  N  41.272  -15.240  -78.054   0.146  -3.352  -0.247  H9   QBQ  36  
QBQ  H8   H5   H  0  1  N  N  N  42.790  -14.827  -78.921  -0.359  -2.206  -1.512  H8   QBQ  37  
QBQ  H2   H6   H  0  1  N  N  N  40.132  -13.464  -76.822  -2.379  -3.449  -0.902  H2   QBQ  38  
QBQ  H3   H7   H  0  1  N  N  N  38.889  -13.869  -78.803  -4.303  -2.166  -0.884  H3   QBQ  39  
QBQ  H11  H8   H  0  1  N  N  N  40.063  -18.423  -74.024   5.306  -1.411   1.891  H11  QBQ  40  
QBQ  H16  H9   H  0  1  N  N  N  38.902   -9.143  -84.861  -8.359   2.797   0.526  H16  QBQ  41  
QBQ  H12  H10  H  0  1  N  N  N  38.857  -12.576  -73.855   7.289   3.800   1.818  H12  QBQ  42  
QBQ  H5   H11  H  0  1  N  N  N  41.275   -8.231  -82.507  -8.621   1.778   2.613  H5   QBQ  43  
QBQ  H4   H12  H  0  1  N  N  N  40.462   -7.824  -83.981  -7.483   0.674   3.169  H4   QBQ  44  
QBQ  H6   H13  H  0  1  N  N  N  36.991  -13.623  -83.219  -4.669   2.191  -2.963  H6   QBQ  45  
QBQ  H14  H14  H  0  1  N  N  N  41.165  -11.399  -76.486  -3.268  -4.644   0.965  H14  QBQ  46  
QBQ  H15  H15  H  0  1  N  N  N  37.560  -12.384  -77.608  -5.042  -3.461   0.982  H15  QBQ  47  
QBQ  H10  H16  H  0  1  N  N  N  44.580  -15.193  -74.462   1.954  -0.269  -2.480  H10  QBQ  48  
QBQ  H13  H17  H  0  1  N  N  N  37.705  -15.903  -72.796   5.858   3.461  -0.976  H13  QBQ  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QBQ  O13  C10  DOUB  N  N   1  
QBQ  C10  N3   SING  N  N   2  
QBQ  C10  C2   SING  N  N   3  
QBQ  N3   C    SING  N  N   4  
QBQ  N    C    SING  N  N   5  
QBQ  C    N1   DOUB  N  N   6  
QBQ  C2   C3   SING  Y  N   7  
QBQ  C2   C1   DOUB  Y  N   8  
QBQ  C3   C4   DOUB  Y  N   9  
QBQ  C1   N1   SING  N  N  10  
QBQ  C1   N2   SING  Y  N  11  
QBQ  C4   N2   SING  Y  N  12  
QBQ  N2   C5   SING  N  N  13  
QBQ  C5   O    SING  N  N  14  
QBQ  C5   C9   SING  N  N  15  
QBQ  O    C6   SING  N  N  16  
QBQ  C9   O12  SING  N  N  17  
QBQ  C9   C8   SING  N  N  18  
QBQ  C6   C7   SING  N  N  19  
QBQ  C6   C8   SING  N  N  20  
QBQ  C7   O1   SING  N  N  21  
QBQ  C8   O11  SING  N  N  22  
QBQ  O1   P    SING  N  N  23  
QBQ  O3   P    DOUB  N  N  24  
QBQ  P    O4   SING  N  N  25  
QBQ  P    O2   SING  N  N  26  
QBQ  O4   P1   SING  N  N  27  
QBQ  O10  P2   DOUB  N  N  28  
QBQ  O5   P1   SING  N  N  29  
QBQ  O7   P1   SING  N  N  30  
QBQ  O7   P2   SING  N  N  31  
QBQ  P1   O6   DOUB  N  N  32  
QBQ  P2   O8   SING  N  N  33  
QBQ  P2   O9   SING  N  N  34  
QBQ  C4   H7   SING  N  N  35  
QBQ  C5   H    SING  N  N  36  
QBQ  C6   H1   SING  N  N  37  
QBQ  C7   H9   SING  N  N  38  
QBQ  C7   H8   SING  N  N  39  
QBQ  C8   H2   SING  N  N  40  
QBQ  C9   H3   SING  N  N  41  
QBQ  O5   H11  SING  N  N  42  
QBQ  N3   H16  SING  N  N  43  
QBQ  O8   H12  SING  N  N  44  
QBQ  N    H5   SING  N  N  45  
QBQ  N    H4   SING  N  N  46  
QBQ  C3   H6   SING  N  N  47  
QBQ  O11  H14  SING  N  N  48  
QBQ  O12  H15  SING  N  N  49  
QBQ  O2   H10  SING  N  N  50  
QBQ  O9   H13  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QBQ  InChI             InChI                 1.03   "InChI=1S/C11H17N4O14P3/c12-11-13-8-4(9(18)14-11)1-2-15(8)10-7(17)6(16)5(27-10)3-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-2,5-7,10,16-17H,3H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,13,14,18)/t5-,6-,7-,10-/m1/s1"  
QBQ  InChIKey          InChI                 1.03   NOXMCJDDSWCSIE-DAGMQNCNSA-N  
QBQ  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(ccc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O"  
QBQ  SMILES            CACTVS                3.385  "NC1=Nc2n(ccc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"  
QBQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"  
QBQ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          QBQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QBQ  "Create component"  2020-06-02  PDBE  
QBQ  "Initial release"   2020-12-09  RCSB  
QBQ  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     QBQ
_pdbx_chem_comp_synonyms.name        "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
