data_Q9Q
#

_chem_comp.id                                   Q9Q
_chem_comp.name                                 "4-((1-(2-(2-(2-(2-hydroxyethoxy)ethoxy)ethoxy)ethyl)-1H-1,2,3-triazol-4-yl)methoxy)benzyl-a-L-thiofucoside"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H37 N3 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]p
henyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-28
_chem_comp.pdbx_modified_date                   2021-04-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       543.630
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q9Q
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z6C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q9Q  C19  C1   C  0  1  N  N  N   1.377  -16.520  13.992    5.390  -2.503  -0.592  C19  Q9Q   1  
Q9Q  N3   N1   N  0  1  Y  N  N   0.999  -16.769  12.581    4.115  -3.033  -0.102  N3   Q9Q   2  
Q9Q  N2   N2   N  0  1  Y  N  N   0.281  -15.783  11.960    3.966  -4.068   0.648  N2   Q9Q   3  
Q9Q  C18  C2   C  0  1  Y  N  N   1.096  -17.749  11.654    2.891  -2.513  -0.354  C18  Q9Q   4  
Q9Q  C17  C3   C  0  1  Y  N  N   0.470  -17.306  10.444    2.004  -3.308   0.288  C17  Q9Q   5  
Q9Q  N1   N3   N  0  1  Y  N  N  -0.027  -16.048  10.646    2.719  -4.260   0.897  N1   Q9Q   6  
Q9Q  C16  C4   C  0  1  N  N  N   0.309  -18.015   9.092    0.505  -3.151   0.313  C16  Q9Q   7  
Q9Q  O6   O1   O  0  1  N  N  N  -1.039  -18.377   8.992    0.133  -2.009  -0.461  O6   Q9Q   8  
Q9Q  C13  C5   C  0  1  Y  N  N  -1.490  -19.166   7.988   -1.193  -1.724  -0.542  C13  Q9Q   9  
Q9Q  C12  C6   C  0  1  Y  N  N  -2.811  -19.123   7.774   -1.625  -0.630  -1.277  C12  Q9Q  10  
Q9Q  C11  C7   C  0  1  Y  N  N  -3.328  -19.912   6.813   -2.974  -0.343  -1.358  C11  Q9Q  11  
Q9Q  C14  C8   C  0  1  Y  N  N  -0.708  -19.999   7.220   -2.118  -2.531   0.106  C14  Q9Q  12  
Q9Q  C15  C9   C  0  1  Y  N  N  -1.238  -20.780   6.220   -3.466  -2.240   0.022  C15  Q9Q  13  
Q9Q  C10  C10  C  0  1  Y  N  N  -2.592  -20.744   6.024   -3.893  -1.145  -0.707  C10  Q9Q  14  
Q9Q  C9   C11  C  0  1  N  N  N  -3.377  -21.496   4.976   -5.364  -0.830  -0.797  C9   Q9Q  15  
Q9Q  S1   S1   S  0  1  N  N  N  -4.428  -20.589   3.830   -5.830   0.276   0.564  S1   Q9Q  16  
Q9Q  C1   C12  C  0  1  N  N  S  -3.201  -19.334   3.208   -7.604   0.536   0.289  C1   Q9Q  17  
Q9Q  O5   O2   O  0  1  N  N  N  -3.113  -18.206   4.065   -7.798   1.235  -0.942  O5   Q9Q  18  
Q9Q  C5   C13  C  0  1  N  N  S  -4.232  -17.348   3.995   -9.169   1.471  -1.270  C5   Q9Q  19  
Q9Q  C6   C14  C  0  1  N  N  N  -4.019  -16.365   5.065   -9.908   0.135  -1.363  C6   Q9Q  20  
Q9Q  C4   C15  C  0  1  N  N  S  -4.502  -16.770   2.622   -9.811   2.335  -0.181  C4   Q9Q  21  
Q9Q  O4   O3   O  0  1  N  N  N  -3.351  -15.951   2.358  -11.196   2.525  -0.477  O4   Q9Q  22  
Q9Q  C3   C16  C  0  1  N  N  R  -4.640  -17.952   1.666   -9.668   1.629   1.171  C3   Q9Q  23  
Q9Q  O3   O4   O  0  1  N  N  N  -4.759  -17.560   0.351  -10.378   0.389   1.140  O3   Q9Q  24  
Q9Q  C2   C17  C  0  1  N  N  S  -3.480  -18.900   1.809   -8.183   1.362   1.440  C2   Q9Q  25  
Q9Q  O2   O5   O  0  1  N  N  N  -3.675  -20.028   0.954   -7.484   2.605   1.535  O2   Q9Q  26  
Q9Q  H1   H1   H  0  1  N  N  N   0.628  -16.629  14.790    5.849  -3.228  -1.264  H1   Q9Q  27  
Q9Q  H2   H2   H  0  1  N  N  N   2.360  -16.846  14.364    5.214  -1.571  -1.129  H2   Q9Q  28  
Q9Q  H4   H4   H  0  1  N  N  N   1.568  -18.709  11.802    2.667  -1.640  -0.949  H4   Q9Q  29  
Q9Q  H5   H5   H  0  1  N  N  N   0.947  -18.910   9.054    0.039  -4.043  -0.107  H5   Q9Q  30  
Q9Q  H6   H6   H  0  1  N  N  N   0.582  -17.335   8.271    0.171  -3.017   1.342  H6   Q9Q  31  
Q9Q  H7   H7   H  0  1  N  N  N  -3.446  -18.472   8.357   -0.908  -0.003  -1.785  H7   Q9Q  32  
Q9Q  H8   H8   H  0  1  N  N  N  -4.396  -19.883   6.657   -3.311   0.509  -1.930  H8   Q9Q  33  
Q9Q  H9   H9   H  0  1  N  N  N   0.355  -20.040   7.409   -1.785  -3.386   0.675  H9   Q9Q  34  
Q9Q  H10  H10  H  0  1  N  N  N  -0.604  -21.404   5.607   -4.186  -2.867   0.525  H10  Q9Q  35  
Q9Q  H11  H11  H  0  1  N  N  N  -4.026  -22.205   5.511   -5.574  -0.342  -1.749  H11  Q9Q  36  
Q9Q  H12  H12  H  0  1  N  N  N  -2.648  -22.052   4.369   -5.939  -1.753  -0.728  H12  Q9Q  37  
Q9Q  H13  H13  H  0  1  N  N  N  -2.238  -19.866   3.215   -8.110  -0.428   0.242  H13  Q9Q  38  
Q9Q  H14  H14  H  0  1  N  N  N  -5.122  -17.934   4.268   -9.230   1.988  -2.227  H14  Q9Q  39  
Q9Q  H15  H15  H  0  1  N  N  N  -3.833  -16.890   6.014   -9.711  -0.453  -0.467  H15  Q9Q  40  
Q9Q  H16  H16  H  0  1  N  N  N  -3.151  -15.736   4.817  -10.979   0.318  -1.449  H16  Q9Q  41  
Q9Q  H17  H17  H  0  1  N  N  N  -4.914  -15.733   5.165   -9.561  -0.412  -2.240  H17  Q9Q  42  
Q9Q  H18  H18  H  0  1  N  N  N  -5.428  -16.176   2.630   -9.311   3.303  -0.141  H18  Q9Q  43  
Q9Q  H19  H19  H  0  1  N  N  N  -3.321  -15.236   2.983  -11.361   2.964  -1.323  H19  Q9Q  44  
Q9Q  H20  H20  H  0  1  N  N  N  -5.548  -18.500   1.959  -10.073   2.264   1.959  H20  Q9Q  45  
Q9Q  H21  H21  H  0  1  N  N  N  -5.492  -16.962   0.263  -10.324  -0.115   1.964  H21  Q9Q  46  
Q9Q  H22  H22  H  0  1  N  N  N  -2.587  -18.364   1.456   -8.076   0.811   2.374  H22  Q9Q  47  
Q9Q  H23  H23  H  0  1  N  N  N  -2.942  -20.626   1.045   -6.537   2.511   1.705  H23  Q9Q  48  
Q9Q  C7   C18  C  0  1  N  N  N       ?        ?       ?    6.323  -2.242   0.591  C7   Q9Q  49  
Q9Q  O1   O6   O  0  1  N  N  N       ?        ?       ?    7.566  -1.726   0.113  O1   Q9Q  50  
Q9Q  C20  C20  C  0  1  N  N  N       ?        ?       ?    8.515  -1.446   1.144  C20  Q9Q  51  
Q9Q  C21  C21  C  0  1  N  N  N       ?        ?       ?    9.801  -0.901   0.520  C21  Q9Q  52  
Q9Q  O7   O7   O  0  1  N  N  N       ?        ?       ?    9.534   0.358  -0.100  O7   Q9Q  53  
Q9Q  C22  C22  C  0  1  N  N  N       ?        ?       ?   10.275   2.293  -1.345  C22  Q9Q  54  
Q9Q  C23  C23  C  0  1  N  N  N       ?        ?       ?   10.676   0.956  -0.717  C23  Q9Q  55  
Q9Q  O8   O8   O  0  1  N  N  N       ?        ?       ?    9.880   3.203  -0.316  O8   Q9Q  56  
Q9Q  C25  C25  C  0  1  N  N  N       ?        ?       ?    9.484   4.489  -0.798  C25  Q9Q  57  
Q9Q  C26  C26  C  0  1  N  N  N       ?        ?       ?    9.085   5.376   0.383  C26  Q9Q  58  
Q9Q  O9   O9   O  0  1  N  N  N       ?        ?       ?   10.229   5.616   1.206  O9   Q9Q  59  
Q9Q  H3   H3   H  0  1  N  N  N       ?        ?       ?    5.863  -1.517   1.263  H3   Q9Q  60  
Q9Q  H24  H24  H  0  1  N  N  N       ?        ?       ?    6.498  -3.174   1.128  H24  Q9Q  61  
Q9Q  H25  H25  H  0  1  N  N  N       ?        ?       ?    8.100  -0.704   1.827  H25  Q9Q  62  
Q9Q  H26  H26  H  0  1  N  N  N       ?        ?       ?    8.736  -2.361   1.693  H26  Q9Q  63  
Q9Q  H27  H27  H  0  1  N  N  N       ?        ?       ?   10.555  -0.771   1.296  H27  Q9Q  64  
Q9Q  H28  H28  H  0  1  N  N  N       ?        ?       ?   10.168  -1.604  -0.228  H28  Q9Q  65  
Q9Q  H29  H29  H  0  1  N  N  N       ?        ?       ?   11.123   2.706  -1.891  H29  Q9Q  66  
Q9Q  H30  H30  H  0  1  N  N  N       ?        ?       ?    9.442   2.136  -2.031  H30  Q9Q  67  
Q9Q  H31  H31  H  0  1  N  N  N       ?        ?       ?   11.448   1.125   0.034  H31  Q9Q  68  
Q9Q  H32  H32  H  0  1  N  N  N       ?        ?       ?   11.060   0.292  -1.491  H32  Q9Q  69  
Q9Q  H33  H33  H  0  1  N  N  N       ?        ?       ?   10.316   4.948  -1.333  H33  Q9Q  70  
Q9Q  H34  H34  H  0  1  N  N  N       ?        ?       ?    8.635   4.378  -1.473  H34  Q9Q  71  
Q9Q  H35  H35  H  0  1  N  N  N       ?        ?       ?    8.700   6.325   0.010  H35  Q9Q  72  
Q9Q  H36  H36  H  0  1  N  N  N       ?        ?       ?    8.315   4.875   0.969  H36  Q9Q  73  
Q9Q  H37  H37  H  0  1  N  N  N       ?        ?       ?   10.049   6.173   1.975  H37  Q9Q  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q9Q  O3   C3   SING  N  N   1  
Q9Q  O2   C2   SING  N  N   2  
Q9Q  C3   C2   SING  N  N   3  
Q9Q  C3   C4   SING  N  N   4  
Q9Q  C2   C1   SING  N  N   5  
Q9Q  O4   C4   SING  N  N   6  
Q9Q  C4   C5   SING  N  N   7  
Q9Q  C1   S1   SING  N  N   8  
Q9Q  C1   O5   SING  N  N   9  
Q9Q  S1   C9   SING  N  N  10  
Q9Q  C5   O5   SING  N  N  11  
Q9Q  C5   C6   SING  N  N  12  
Q9Q  C9   C10  SING  N  N  13  
Q9Q  C10  C15  DOUB  Y  N  14  
Q9Q  C10  C11  SING  Y  N  15  
Q9Q  C15  C14  SING  Y  N  16  
Q9Q  C11  C12  DOUB  Y  N  17  
Q9Q  C14  C13  DOUB  Y  N  18  
Q9Q  C12  C13  SING  Y  N  19  
Q9Q  C13  O6   SING  N  N  20  
Q9Q  O6   C16  SING  N  N  21  
Q9Q  C16  C17  SING  N  N  22  
Q9Q  C17  N1   SING  Y  N  23  
Q9Q  C17  C18  DOUB  Y  N  24  
Q9Q  N1   N2   DOUB  Y  N  25  
Q9Q  C18  N3   SING  Y  N  26  
Q9Q  N2   N3   SING  Y  N  27  
Q9Q  N3   C19  SING  N  N  28  
Q9Q  C19  H1   SING  N  N  29  
Q9Q  C19  H2   SING  N  N  30  
Q9Q  C18  H4   SING  N  N  31  
Q9Q  C16  H5   SING  N  N  32  
Q9Q  C16  H6   SING  N  N  33  
Q9Q  C12  H7   SING  N  N  34  
Q9Q  C11  H8   SING  N  N  35  
Q9Q  C14  H9   SING  N  N  36  
Q9Q  C15  H10  SING  N  N  37  
Q9Q  C9   H11  SING  N  N  38  
Q9Q  C9   H12  SING  N  N  39  
Q9Q  C1   H13  SING  N  N  40  
Q9Q  C5   H14  SING  N  N  41  
Q9Q  C6   H15  SING  N  N  42  
Q9Q  C6   H16  SING  N  N  43  
Q9Q  C6   H17  SING  N  N  44  
Q9Q  C4   H18  SING  N  N  45  
Q9Q  O4   H19  SING  N  N  46  
Q9Q  C3   H20  SING  N  N  47  
Q9Q  O3   H21  SING  N  N  48  
Q9Q  C2   H22  SING  N  N  49  
Q9Q  O2   H23  SING  N  N  50  
Q9Q  C7   C19  SING  N  N  51  
Q9Q  O1   C7   SING  N  N  52  
Q9Q  O1   C20  SING  N  N  53  
Q9Q  C21  C20  SING  N  N  54  
Q9Q  O7   C21  SING  N  N  55  
Q9Q  C23  C22  SING  N  N  56  
Q9Q  C23  O7   SING  N  N  57  
Q9Q  O8   C22  SING  N  N  58  
Q9Q  C25  O8   SING  N  N  59  
Q9Q  C25  C26  SING  N  N  60  
Q9Q  O9   C26  SING  N  N  61  
Q9Q  C7   H3   SING  N  N  62  
Q9Q  C7   H24  SING  N  N  63  
Q9Q  C20  H25  SING  N  N  64  
Q9Q  C20  H26  SING  N  N  65  
Q9Q  C21  H27  SING  N  N  66  
Q9Q  C21  H28  SING  N  N  67  
Q9Q  C22  H29  SING  N  N  68  
Q9Q  C22  H30  SING  N  N  69  
Q9Q  C23  H31  SING  N  N  70  
Q9Q  C23  H32  SING  N  N  71  
Q9Q  C25  H33  SING  N  N  72  
Q9Q  C25  H34  SING  N  N  73  
Q9Q  C26  H35  SING  N  N  74  
Q9Q  C26  H36  SING  N  N  75  
Q9Q  O9   H37  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q9Q  InChI             InChI                 1.03   "InChI=1S/C24H37N3O9S/c1-17-21(29)22(30)23(31)24(36-17)37-16-18-2-4-20(5-3-18)35-15-19-14-27(26-25-19)6-8-32-10-12-34-13-11-33-9-7-28/h2-5,14,17,21-24,28-31H,6-13,15-16H2,1H3/t17-,21+,22+,23-,24-/m0/s1"  
Q9Q  InChIKey          InChI                 1.03   YKPIHJOKBVPCNG-BQEPTVRSSA-N  
Q9Q  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1O[C@@H](SCc2ccc(OCc3cn(CCOCCOCCOCCO)nn3)cc2)[C@@H](O)[C@H](O)[C@@H]1O"  
Q9Q  SMILES            CACTVS                3.385  "C[CH]1O[CH](SCc2ccc(OCc3cn(CCOCCOCCOCCO)nn3)cc2)[CH](O)[CH](O)[CH]1O"  
Q9Q  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)SCc2ccc(cc2)OCc3cn(nn3)CCOCCOCCOCCO)O)O)O"  
Q9Q  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)SCc2ccc(cc2)OCc3cn(nn3)CCOCCOCCOCCO)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          Q9Q
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]phenyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Q9Q
_pdbx_chem_comp_synonyms.name        "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[4-[[1-[2-[2-[2-(2-hydroxyethyloxy)ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methoxy]phenyl]methylsulfanyl]-6-methyl-oxane-3,4,5-triol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q9Q  "Create component"  2020-05-28  PDBE  
Q9Q  "Modify synonyms"   2020-06-05  PDBE  
Q9Q  "Initial release"   2021-04-07  RCSB  
##
