data_PUQ
#

_chem_comp.id                                   PUQ
_chem_comp.name                                 "pelargonidin 3-O-beta-D-glucoside"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H22 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-28
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       434.393
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PUQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YVE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PUQ  O10   O1   O  0  1  N  N  N  38.902  -40.749  -2.827   3.710   2.173   2.066  O10   PUQ   1  
PUQ  C20   C1   C  0  1  N  N  S  39.343  -39.830  -1.825   3.582   1.773   0.700  C20   PUQ   2  
PUQ  C19   C2   C  0  1  N  N  R  40.827  -39.516  -1.885   4.172   0.370   0.520  C19   PUQ   3  
PUQ  O9    O2   O  0  1  N  N  N  41.573  -40.729  -1.758   5.570   0.399   0.811  O9    PUQ   4  
PUQ  C18   C3   C  0  1  N  N  R  41.237  -38.542  -0.782   3.959  -0.079  -0.929  C18   PUQ   5  
PUQ  O8    O3   O  0  1  N  N  N  42.456  -37.924  -1.183   4.440  -1.414  -1.091  O8    PUQ   6  
PUQ  C17   C4   C  0  1  N  N  S  40.223  -37.402  -0.496   2.464  -0.031  -1.256  C17   PUQ   7  
PUQ  C21   C5   C  0  1  N  N  N  40.226  -36.986   0.960   2.249  -0.420  -2.720  C21   PUQ   8  
PUQ  O7    O4   O  0  1  N  N  N  39.265  -35.951   1.211   0.848  -0.489  -2.993  O7    PUQ   9  
PUQ  O6    O5   O  0  1  N  N  N  38.833  -37.724  -0.781   1.972   1.293  -1.038  O6    PUQ  10  
PUQ  C16   C6   C  0  1  N  N  S  38.564  -38.525  -1.924   2.102   1.751   0.310  C16   PUQ  11  
PUQ  O2    O6   O  0  1  N  N  N  38.894  -37.879  -3.161   1.392   0.868   1.181  O2    PUQ  12  
PUQ  C8    C7   C  0  1  N  N  N  38.337  -36.656  -3.478   0.044   0.812   1.038  C8    PUQ  13  
PUQ  C7    C8   C  0  1  N  N  N  38.252  -35.765  -2.427  -0.562   1.564   0.111  C7    PUQ  14  
PUQ  C5    C9   C  0  1  Y  N  N  37.216  -34.828  -2.432  -2.034   1.477   0.002  C5    PUQ  15  
PUQ  C4    C10  C  0  1  Y  N  N  36.798  -34.174  -1.263  -2.708   1.946  -1.125  C4    PUQ  16  
PUQ  O3    O7   O  0  1  N  N  N  37.387  -34.471  -0.084  -2.017   2.498  -2.157  O3    PUQ  17  
PUQ  C3    C11  C  0  1  Y  N  N  35.768  -33.246  -1.316  -4.090   1.844  -1.186  C3    PUQ  18  
PUQ  C2    C12  C  0  1  Y  N  N  35.148  -32.963  -2.536  -4.794   1.280  -0.132  C2    PUQ  19  
PUQ  O4    O8   O  0  1  N  N  N  34.112  -32.064  -2.606  -6.148   1.185  -0.200  O4    PUQ  20  
PUQ  C9    C13  C  0  1  N  N  S  37.888  -36.209  -4.747  -0.771  -0.100   1.916  C9    PUQ  21  
PUQ  O1    O9   O  0  1  N  N  N  36.992  -35.154  -4.811  -2.067   0.453   2.148  O1    PUQ  22  
PUQ  C6    C14  C  0  1  Y  N  N  36.608  -34.517  -3.642  -2.750   0.908   1.065  C6    PUQ  23  
PUQ  C1    C15  C  0  1  Y  N  N  35.582  -33.584  -3.701  -4.126   0.812   0.992  C1    PUQ  24  
PUQ  C10   C16  C  0  1  Y  N  N  38.393  -36.711  -6.047  -0.916  -1.440   1.243  C10   PUQ  25  
PUQ  C15   C17  C  0  1  Y  N  N  38.153  -35.995  -7.221  -0.108  -2.495   1.623  C15   PUQ  26  
PUQ  C14   C18  C  0  1  Y  N  N  38.061  -36.673  -8.416  -0.239  -3.724   1.007  C14   PUQ  27  
PUQ  C13   C19  C  0  1  Y  N  N  38.361  -38.058  -8.478  -1.183  -3.900   0.005  C13   PUQ  28  
PUQ  O5    O10  O  0  1  N  N  N  38.022  -38.782  -9.499  -1.314  -5.108  -0.603  O5    PUQ  29  
PUQ  C12   C20  C  0  1  Y  N  N  39.007  -38.621  -7.345  -1.993  -2.839  -0.375  C12   PUQ  30  
PUQ  C11   C21  C  0  1  Y  N  N  39.081  -37.918  -6.163  -1.861  -1.614   0.249  C11   PUQ  31  
PUQ  HO10  H1   H  0  0  N  N  N  39.395  -41.558  -2.755   3.355   3.052   2.253  HO10  PUQ  32  
PUQ  H20   H2   H  0  1  N  N  N  39.136  -40.263  -0.835   4.116   2.477   0.062  H20   PUQ  33  
PUQ  H19   H3   H  0  1  N  N  N  41.045  -39.049  -2.857   3.673  -0.324   1.195  H19   PUQ  34  
PUQ  HO9   H4   H  0  1  N  N  N  42.502  -40.535  -1.795   5.779   0.682   1.712  HO9   PUQ  35  
PUQ  H18   H5   H  0  1  N  N  N  41.391  -39.109   0.148   4.500   0.588  -1.600  H18   PUQ  36  
PUQ  HO8   H6   H  0  1  N  N  N  42.736  -37.311  -0.514   5.381  -1.520  -0.895  HO8   PUQ  37  
PUQ  H17   H7   H  0  1  N  N  N  40.519  -36.532  -1.101   1.929  -0.728  -0.612  H17   PUQ  38  
PUQ  H211  H8   H  0  0  N  N  N  39.982  -37.860   1.582   2.709   0.327  -3.366  H211  PUQ  39  
PUQ  H212  H9   H  0  0  N  N  N  41.228  -36.616   1.224   2.704  -1.393  -2.907  H212  PUQ  40  
PUQ  HO7   H10  H  0  1  N  N  N  39.290  -35.711   2.130   0.637  -0.731  -3.905  HO7   PUQ  41  
PUQ  H16   H11  H  0  1  N  N  N  37.494  -38.779  -1.935   1.688   2.756   0.395  H16   PUQ  42  
PUQ  H7    H12  H  0  1  N  N  N  38.969  -35.792  -1.620   0.007   2.214  -0.537  H7    PUQ  43  
PUQ  HO3   H13  H  0  1  N  N  N  36.996  -33.948   0.606  -1.742   1.861  -2.831  HO3   PUQ  44  
PUQ  H3    H14  H  0  1  N  N  N  35.446  -32.743  -0.416  -4.619   2.205  -2.055  H3    PUQ  45  
PUQ  HO4   H15  H  0  1  N  N  N  33.928  -31.724  -1.738  -6.466   0.362  -0.595  HO4   PUQ  46  
PUQ  H1    H16  H  0  1  N  N  N  35.123  -33.342  -4.648  -4.681   0.370   1.807  H1    PUQ  47  
PUQ  H15   H17  H  0  1  N  N  N  38.041  -34.921  -7.192   0.627  -2.358   2.403  H15   PUQ  48  
PUQ  H14   H18  H  0  1  N  N  N  37.759  -36.148  -9.310   0.393  -4.548   1.304  H14   PUQ  49  
PUQ  HO5   H19  H  0  1  N  N  N  38.306  -39.678  -9.361  -1.949  -5.697  -0.174  HO5   PUQ  50  
PUQ  H12   H20  H  0  1  N  N  N  39.443  -39.607  -7.411  -2.728  -2.973  -1.154  H12   PUQ  51  
PUQ  H11   H21  H  0  1  N  N  N  39.664  -38.297  -5.337  -2.492  -0.788  -0.046  H11   PUQ  52  
PUQ  H2    H22  H  0  1  N  N  N  37.069  -36.944  -4.749  -0.259  -0.231   2.870  H2    PUQ  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PUQ  O5   C13   SING  N  N   1  
PUQ  C13  C14   DOUB  Y  N   2  
PUQ  C13  C12   SING  Y  N   3  
PUQ  C14  C15   SING  Y  N   4  
PUQ  C12  C11   DOUB  Y  N   5  
PUQ  C15  C10   DOUB  Y  N   6  
PUQ  C11  C10   SING  Y  N   7  
PUQ  C10  C9    SING  N  N   8  
PUQ  O1   C9    SING  N  N   9  
PUQ  O1   C6    SING  N  N  10  
PUQ  C9   C8    SING  N  N  11  
PUQ  C1   C6    DOUB  Y  N  12  
PUQ  C1   C2    SING  Y  N  13  
PUQ  C6   C5    SING  Y  N  14  
PUQ  C8   O2    SING  N  N  15  
PUQ  C8   C7    DOUB  N  N  16  
PUQ  O2   C16   SING  N  N  17  
PUQ  O10  C20   SING  N  N  18  
PUQ  O4   C2    SING  N  N  19  
PUQ  C2   C3    DOUB  Y  N  20  
PUQ  C5   C7    SING  N  N  21  
PUQ  C5   C4    DOUB  Y  N  22  
PUQ  C16  C20   SING  N  N  23  
PUQ  C16  O6    SING  N  N  24  
PUQ  C19  C20   SING  N  N  25  
PUQ  C19  O9    SING  N  N  26  
PUQ  C19  C18   SING  N  N  27  
PUQ  C3   C4    SING  Y  N  28  
PUQ  C4   O3    SING  N  N  29  
PUQ  O8   C18   SING  N  N  30  
PUQ  C18  C17   SING  N  N  31  
PUQ  O6   C17   SING  N  N  32  
PUQ  C17  C21   SING  N  N  33  
PUQ  C21  O7    SING  N  N  34  
PUQ  O10  HO10  SING  N  N  35  
PUQ  C20  H20   SING  N  N  36  
PUQ  C19  H19   SING  N  N  37  
PUQ  O9   HO9   SING  N  N  38  
PUQ  C18  H18   SING  N  N  39  
PUQ  O8   HO8   SING  N  N  40  
PUQ  C17  H17   SING  N  N  41  
PUQ  C21  H211  SING  N  N  42  
PUQ  C21  H212  SING  N  N  43  
PUQ  O7   HO7   SING  N  N  44  
PUQ  C16  H16   SING  N  N  45  
PUQ  C7   H7    SING  N  N  46  
PUQ  O3   HO3   SING  N  N  47  
PUQ  C3   H3    SING  N  N  48  
PUQ  O4   HO4   SING  N  N  49  
PUQ  C1   H1    SING  N  N  50  
PUQ  C15  H15   SING  N  N  51  
PUQ  C14  H14   SING  N  N  52  
PUQ  O5   HO5   SING  N  N  53  
PUQ  C12  H12   SING  N  N  54  
PUQ  C11  H11   SING  N  N  55  
PUQ  C9   H2    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PUQ  InChI             InChI                 1.03   "InChI=1S/C21H22O10/c22-8-16-17(26)18(27)19(28)21(31-16)30-15-7-12-13(25)5-11(24)6-14(12)29-20(15)9-1-3-10(23)4-2-9/h1-7,16-28H,8H2/t16-,17-,18+,19-,20?,21+/m0/s1"  
PUQ  InChIKey          InChI                 1.03   SNGNSJWVINEVCL-FGWZRKRKSA-N  
PUQ  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H]1O[C@@H](OC2=Cc3c(O)cc(O)cc3O[C@H]2c4ccc(O)cc4)[C@@H](O)[C@H](O)[C@H]1O"  
PUQ  SMILES            CACTVS                3.385  "OC[CH]1O[CH](OC2=Cc3c(O)cc(O)cc3O[CH]2c4ccc(O)cc4)[CH](O)[CH](O)[CH]1O"  
PUQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C2C(=Cc3c(cc(cc3O2)O)O)O[C@H]4[C@H]([C@@H]([C@H]([C@@H](O4)CO)O)O)O)O"  
PUQ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C2C(=Cc3c(cc(cc3O2)O)O)OC4C(C(C(C(O4)CO)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          PUQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PUQ  "Create component"  2020-04-28  PDBE  
PUQ  "Initial release"   2020-11-18  RCSB  
PUQ  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PUQ
_pdbx_chem_comp_synonyms.name        "(2~{S},3~{R},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-[[2-(4-hydroxyphenyl)-5,7-bis(oxidanyl)-2~{H}-chromen-3-yl]oxy]oxane-3,4,5-triol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
