data_NDQ
#

_chem_comp.id                                   NDQ
_chem_comp.name                                 "2-[3-[(4-azanyl-2-methoxy-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H19 N4 O8 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2019-11-26
_chem_comp.pdbx_modified_date                   2020-07-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       441.314
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NDQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TJ8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NDQ  C4     C1   C  0  1  Y  N  N  26.442  12.264   2.166  -1.742  -0.455   0.440  C4     NDQ   1  
NDQ  C5     C2   C  0  1  Y  N  N  26.692  12.223   0.771  -0.836  -0.859  -0.455  C5     NDQ   2  
NDQ  C2     C3   C  0  1  Y  N  N  24.932  13.776   1.335  -2.747  -2.367  -0.094  C2     NDQ   3  
NDQ  "C2'"  C4   C  0  1  Y  N  N  22.374  10.045   4.508  -6.787   1.271  -0.386  "C2'"  NDQ   4  
NDQ  C35    C5   C  0  1  N  N  N  24.944  13.309   3.789  -3.836  -0.988   1.548  C35    NDQ   5  
NDQ  "C4'"  C6   C  0  1  Y  N  N  22.649  12.052   3.528  -5.867  -0.794   0.060  "C4'"  NDQ   6  
NDQ  C4A    C7   C  0  1  N  N  N  27.176  11.414   3.131  -1.621   0.845   1.192  C4A    NDQ   7  
NDQ  "C5'"  C8   C  0  1  Y  N  N  23.983  12.146   4.082  -4.898  -0.175   0.852  "C5'"  NDQ   8  
NDQ  "C6'"  C9   C  0  1  Y  N  N  24.330  11.097   4.868  -4.937   1.199   0.987  "C6'"  NDQ   9  
NDQ  "C7'"  C10  C  0  1  N  N  N  22.064   7.959   5.439  -7.698   3.422  -0.809  "C7'"  NDQ  10  
NDQ  "N1'"  N1   N  0  1  Y  N  N  23.539  10.039   5.104  -5.884   1.884   0.362  "N1'"  NDQ  11  
NDQ  N3     N2   N  1  1  Y  N  N  25.464  13.145   2.425  -2.753  -1.283   0.607  N3     NDQ  12  
NDQ  "N3'"  N3   N  0  1  Y  N  N  21.888  10.985   3.749  -6.787  -0.043  -0.537  "N3'"  NDQ  13  
NDQ  "N4'"  N4   N  0  1  N  N  N  22.163  12.999   2.756  -5.870  -2.170  -0.101  "N4'"  NDQ  14  
NDQ  "O2'"  O1   O  0  1  N  N  N  21.454   9.012   4.657  -7.738   2.007  -1.009  "O2'"  NDQ  15  
NDQ  S1     S1   S  0  1  Y  N  N  25.640  13.278  -0.120  -1.363  -2.413  -1.097  S1     NDQ  16  
NDQ  C5A    C11  C  0  1  N  N  N  27.727  11.328   0.121   0.416  -0.117  -0.847  C5A    NDQ  17  
NDQ  C5B    C12  C  0  1  N  N  N  28.005  11.561  -1.357   1.568  -0.544   0.065  C5B    NDQ  18  
NDQ  O11    O2   O  0  1  N  N  N  27.325  13.278  -3.632   5.305   0.803  -0.317  O11    NDQ  19  
NDQ  O12    O3   O  0  1  N  N  N  25.504  11.549  -4.265   4.528  -1.479   0.432  O12    NDQ  20  
NDQ  O13    O4   O  0  1  N  N  N  28.099  10.958  -4.168   4.043   0.467   1.965  O13    NDQ  21  
NDQ  O21    O5   O  0  1  N  N  N  26.257  14.555  -5.492   7.500   2.140  -0.871  O21    NDQ  22  
NDQ  O22    O6   O  0  1  N  N  N  28.601  13.522  -5.760   7.428   0.447   1.001  O22    NDQ  23  
NDQ  O23    O7   O  0  1  N  N  N  28.104  15.536  -4.299   7.372  -0.440  -1.362  O23    NDQ  24  
NDQ  O5G    O8   O  0  1  N  N  N  26.814  11.444  -2.128   2.755   0.159  -0.306  O5G    NDQ  25  
NDQ  P1     P1   P  0  1  N  N  N  26.890  11.709  -3.661   4.166  -0.044   0.443  P1     NDQ  26  
NDQ  P2     P2   P  0  1  N  N  N  27.620  14.263  -4.899   6.912   0.731  -0.357  P2     NDQ  27  
NDQ  H1     H1   H  0  1  N  N  N  24.145  14.513   1.396  -3.510  -3.131  -0.057  H1     NDQ  28  
NDQ  H2     H2   H  0  1  N  N  N  25.776  13.294   4.509  -3.440  -0.422   2.391  H2     NDQ  29  
NDQ  H3     H3   H  0  1  N  N  N  24.406  14.265   3.870  -4.270  -1.921   1.907  H3     NDQ  30  
NDQ  H4     H4   H  0  1  N  N  N  28.071  11.948   3.484  -1.161   0.662   2.163  H4     NDQ  31  
NDQ  H5     H5   H  0  1  N  N  N  26.524  11.185   3.987  -1.003   1.539   0.622  H5     NDQ  32  
NDQ  H6     H6   H  0  1  N  N  N  27.478  10.478   2.639  -2.612   1.276   1.335  H6     NDQ  33  
NDQ  H7     H7   H  0  1  N  N  N  25.304  11.114   5.333  -4.205   1.709   1.595  H7     NDQ  34  
NDQ  H8     H8   H  0  1  N  N  N  21.348   7.134   5.566  -8.512   3.890  -1.362  H8     NDQ  35  
NDQ  H9     H9   H  0  1  N  N  N  22.961   7.590   4.920  -7.805   3.642   0.253  H9     NDQ  36  
NDQ  H10    H10  H  0  1  N  N  N  22.348   8.353   6.426  -6.745   3.812  -1.166  H10    NDQ  37  
NDQ  H11    H11  H  0  1  N  N  N  21.248  12.741   2.447  -6.547  -2.592  -0.652  H11    NDQ  38  
NDQ  H12    H12  H  0  1  N  N  N  22.112  13.855   3.271  -5.196  -2.711   0.339  H12    NDQ  39  
NDQ  H13    H13  H  0  1  N  N  N  27.387  10.288   0.236   0.667  -0.348  -1.882  H13    NDQ  40  
NDQ  H14    H14  H  0  1  N  N  N  28.674  11.466   0.663   0.250   0.955  -0.744  H14    NDQ  41  
NDQ  H15    H15  H  0  1  N  N  N  28.734  10.815  -1.707   1.318  -0.313   1.100  H15    NDQ  42  
NDQ  H16    H16  H  0  1  N  N  N  28.421  12.571  -1.489   1.734  -1.617  -0.038  H16    NDQ  43  
NDQ  H17    H17  H  0  1  N  N  N  27.844  10.400  -4.893   3.808   1.401   2.049  H17    NDQ  44  
NDQ  H18    H18  H  0  1  N  N  N  26.214  14.208  -6.375   8.465   2.169  -0.920  H18    NDQ  45  
NDQ  H19    H19  H  0  1  N  N  N  29.002  15.691  -4.566   7.069  -0.319  -2.272  H19    NDQ  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NDQ  O22    P2     DOUB  N  N   1  
NDQ  O21    P2     SING  N  N   2  
NDQ  P2     O23    SING  N  N   3  
NDQ  P2     O11    SING  N  N   4  
NDQ  O12    P1     DOUB  N  N   5  
NDQ  O13    P1     SING  N  N   6  
NDQ  P1     O11    SING  N  N   7  
NDQ  P1     O5G    SING  N  N   8  
NDQ  O5G    C5B    SING  N  N   9  
NDQ  C5B    C5A    SING  N  N  10  
NDQ  S1     C5     SING  Y  N  11  
NDQ  S1     C2     SING  Y  N  12  
NDQ  C5A    C5     SING  N  N  13  
NDQ  C5     C4     DOUB  Y  N  14  
NDQ  C2     N3     DOUB  Y  N  15  
NDQ  C4     N3     SING  Y  N  16  
NDQ  C4     C4A    SING  N  N  17  
NDQ  N3     C35    SING  N  N  18  
NDQ  "N4'"  "C4'"  SING  N  N  19  
NDQ  "C4'"  "N3'"  DOUB  Y  N  20  
NDQ  "C4'"  "C5'"  SING  Y  N  21  
NDQ  "N3'"  "C2'"  SING  Y  N  22  
NDQ  C35    "C5'"  SING  N  N  23  
NDQ  "C5'"  "C6'"  DOUB  Y  N  24  
NDQ  "C2'"  "O2'"  SING  N  N  25  
NDQ  "C2'"  "N1'"  DOUB  Y  N  26  
NDQ  "O2'"  "C7'"  SING  N  N  27  
NDQ  "C6'"  "N1'"  SING  Y  N  28  
NDQ  C2     H1     SING  N  N  29  
NDQ  C35    H2     SING  N  N  30  
NDQ  C35    H3     SING  N  N  31  
NDQ  C4A    H4     SING  N  N  32  
NDQ  C4A    H5     SING  N  N  33  
NDQ  C4A    H6     SING  N  N  34  
NDQ  "C6'"  H7     SING  N  N  35  
NDQ  "C7'"  H8     SING  N  N  36  
NDQ  "C7'"  H9     SING  N  N  37  
NDQ  "C7'"  H10    SING  N  N  38  
NDQ  "N4'"  H11    SING  N  N  39  
NDQ  "N4'"  H12    SING  N  N  40  
NDQ  C5A    H13    SING  N  N  41  
NDQ  C5A    H14    SING  N  N  42  
NDQ  C5B    H15    SING  N  N  43  
NDQ  C5B    H16    SING  N  N  44  
NDQ  O13    H17    SING  N  N  45  
NDQ  O21    H18    SING  N  N  46  
NDQ  O23    H19    SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NDQ  InChI             InChI                 1.03   "InChI=1S/C12H18N4O8P2S/c1-8-10(3-4-23-26(20,21)24-25(17,18)19)27-7-16(8)6-9-5-14-12(22-2)15-11(9)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1"  
NDQ  InChIKey          InChI                 1.03   PWBCVHDHRGCQHM-UHFFFAOYSA-O  
NDQ  SMILES_CANONICAL  CACTVS                3.385  "COc1ncc(C[n+]2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"  
NDQ  SMILES            CACTVS                3.385  "COc1ncc(C[n+]2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"  
NDQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(sc[n+]1Cc2cnc(nc2N)OC)CCOP(=O)(O)OP(=O)(O)O"  
NDQ  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(sc[n+]1Cc2cnc(nc2N)OC)CCOP(=O)(O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          NDQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[3-[(4-azanyl-2-methoxy-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NDQ  "Create component"  2019-11-26  PDBE  
NDQ  "Initial release"   2020-07-08  RCSB  
##
