data_I3Q
# 
_chem_comp.id                                    I3Q 
_chem_comp.name                                  "(4S,7R,11S,13E,19S)-N-[2-(2-aminoethoxy)ethyl]-4-[(furan-2-yl)methyl]-3,6,12,15,21-pentaoxo-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-octadecahydro-2H-7,11-methano-2,5,11,16,20-benzopentaazacyclotetracosine-19-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H45 N7 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Macrocyclic Inhibitor JOMBt" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-10 
_chem_comp.pdbx_modified_date                    2022-08-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        679.763 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I3Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TGS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I3Q C10  C1  C 0 1 N N N 54.700 17.054 77.998 -4.916 1.779  -0.557 C10  I3Q 1  
I3Q C13  C2  C 0 1 N N R 54.246 19.737 80.547 -3.723 -1.416 0.471  C13  I3Q 2  
I3Q C15  C3  C 0 1 N N N 52.139 18.368 80.199 -6.174 -1.662 -0.125 C15  I3Q 3  
I3Q C17  C4  C 0 1 N N N 55.203 18.723 81.336 -2.585 -2.354 0.140  C17  I3Q 4  
I3Q C20  C5  C 0 1 N N N 54.591 16.146 84.100 -0.797 -4.067 -0.691 C20  I3Q 5  
I3Q C21  C6  C 0 1 Y N N 54.711 17.029 85.341 0.325  -4.985 -1.102 C21  I3Q 6  
I3Q C22  C7  C 0 1 Y N N 54.161 18.295 85.509 0.801  -6.017 -0.383 C22  I3Q 7  
I3Q C24  C8  C 0 1 Y N N 55.274 17.738 87.369 1.941  -5.888 -2.279 C24  I3Q 8  
I3Q C26  C9  C 0 1 N N N 55.795 15.793 81.993 0.770  -2.146 -0.593 C26  I3Q 9  
I3Q C02  C10 C 0 1 N N N 60.683 11.969 75.641 1.296  2.525  -0.733 C02  I3Q 10 
I3Q C03  C11 C 0 1 N N S 60.204 13.349 76.074 1.715  3.963  -0.564 C03  I3Q 11 
I3Q C04  C12 C 0 1 N N N 60.776 14.455 75.192 1.028  4.826  -1.622 C04  I3Q 12 
I3Q C05  C13 C 0 1 N N N 60.357 15.894 75.625 -0.092 5.645  -0.981 C05  I3Q 13 
I3Q C07  C14 C 0 1 N N N 58.356 16.191 77.194 -1.919 4.117  -0.690 C07  I3Q 14 
I3Q C08  C15 C 0 1 N N N 56.833 16.107 77.326 -3.220 3.511  -1.033 C08  I3Q 15 
I3Q C09  C16 C 0 1 N N N 56.223 17.155 77.876 -3.635 2.454  -0.325 C09  I3Q 16 
I3Q C12  C17 C 0 1 N N N 54.641 19.479 79.084 -3.895 -0.420 -0.671 C12  I3Q 17 
I3Q C14  C18 C 0 1 N N N 52.844 19.479 80.860 -5.003 -2.204 0.683  C14  I3Q 18 
I3Q C16  C19 C 0 1 N N N 52.500 18.150 78.726 -6.308 -0.145 0.061  C16  I3Q 19 
I3Q C19  C20 C 0 1 N N S 55.386 16.828 83.011 -0.241 -2.944 0.187  C19  I3Q 20 
I3Q C23  C21 C 0 1 Y N N 54.513 18.733 86.783 1.842  -6.600 -1.141 C23  I3Q 21 
I3Q C32  C22 C 0 1 N N N 59.795 13.211 78.562 3.905  2.967  -0.429 C32  I3Q 22 
I3Q C33  C23 C 0 1 N N N 60.336 13.542 79.970 3.201  1.725  0.055  C33  I3Q 23 
I3Q C34  C24 C 0 1 Y N N 59.516 12.824 81.031 4.227  0.683  0.418  C34  I3Q 24 
I3Q C35  C25 C 0 1 Y N N 58.265 13.320 81.431 4.071  -0.621 -0.002 C35  I3Q 25 
I3Q C36  C26 C 0 1 N N N 57.716 14.614 80.797 2.877  -1.010 -0.832 C36  I3Q 26 
I3Q C38  C27 C 0 1 Y N N 57.536 12.640 82.388 5.017  -1.575 0.335  C38  I3Q 27 
I3Q C39  C28 C 0 1 Y N N 58.061 11.473 82.923 6.120  -1.221 1.089  C39  I3Q 28 
I3Q C40  C29 C 0 1 Y N N 59.299 10.991 82.507 6.277  0.088  1.507  C40  I3Q 29 
I3Q C41  C30 C 0 1 Y N N 60.021 11.668 81.563 5.333  1.038  1.171  C41  I3Q 30 
I3Q C44  C31 C 0 1 N N N 60.243 9.955  74.138 0.488  0.414  0.177  C44  I3Q 31 
I3Q C45  C32 C 0 1 N N N 60.312 9.977  72.594 0.700  -0.370 1.474  C45  I3Q 32 
I3Q C47  C33 C 0 1 N N N 58.573 10.932 71.320 0.036  -0.442 3.776  C47  I3Q 33 
I3Q C48  C34 C 0 1 N N N 57.067 10.792 71.075 -0.899 0.220  4.790  C48  I3Q 34 
I3Q N06  N1  N 0 1 N N N 58.891 15.875 75.865 -1.395 5.114  -1.456 N06  I3Q 35 
I3Q N11  N2  N 0 1 N N S 54.000 18.196 78.581 -5.047 0.456  -0.378 N11  I3Q 36 
I3Q N18  N3  N 0 1 N N N 54.564 17.808 82.289 -1.340 -2.043 0.595  N18  I3Q 37 
I3Q N31  N4  N 0 1 N N N 60.646 13.609 77.444 3.179  4.078  -0.742 N31  I3Q 38 
I3Q N37  N5  N 0 1 N N N 57.217 15.588 81.791 1.968  -1.838 -0.007 N37  I3Q 39 
I3Q N43  N6  N 0 1 N N N 59.857 11.290 74.620 0.982  1.783  0.347  N43  I3Q 40 
I3Q N49  N7  N 0 1 N N N 56.309 11.675 71.952 -2.293 -0.086 4.443  N49  I3Q 41 
I3Q O01  O1  O 0 1 N N N 61.659 11.465 76.099 1.242  2.036  -1.841 O01  I3Q 42 
I3Q O25  O2  O 0 1 Y N N 55.378 16.723 86.461 1.016  -4.915 -2.252 O25  I3Q 43 
I3Q O27  O3  O 0 1 N N N 54.950 15.208 81.405 0.526  -1.782 -1.724 O27  I3Q 44 
I3Q O28  O4  O 0 1 N N N 56.389 18.665 81.116 -2.776 -3.358 -0.514 O28  I3Q 45 
I3Q O29  O5  O 0 1 N N N 54.140 16.071 77.629 -5.878 2.431  -0.913 O29  I3Q 46 
I3Q O30  O6  O 0 1 N N N 59.028 16.521 78.111 -1.309 3.722  0.284  O30  I3Q 47 
I3Q O42  O7  O 0 1 N N N 58.752 12.656 78.390 5.113  2.979  -0.538 O42  I3Q 48 
I3Q O46  O8  O 0 1 N N N 59.013 9.826  72.075 -0.164 0.145  2.489  O46  I3Q 49 
I3Q H131 H1  H 0 0 N N N 54.520 20.766 80.824 -3.470 -0.871 1.385  H131 I3Q 50 
I3Q H151 H2  H 0 0 N N N 51.059 18.567 80.259 -6.012 -1.881 -1.180 H151 I3Q 51 
I3Q H152 H3  H 0 0 N N N 52.372 17.443 80.747 -7.093 -2.146 0.206  H152 I3Q 52 
I3Q H201 H4  H 0 0 N N N 53.537 16.053 83.800 -1.260 -3.638 -1.580 H201 I3Q 53 
I3Q H202 H5  H 0 0 N N N 55.004 15.147 84.303 -1.542 -4.632 -0.130 H202 I3Q 54 
I3Q H221 H6  H 0 0 N N N 53.570 18.838 84.786 0.454  -6.339 0.588  H221 I3Q 55 
I3Q H241 H7  H 0 0 N N N 55.705 17.760 88.359 2.642  -6.071 -3.080 H241 I3Q 56 
I3Q H031 H8  H 0 0 N N N 59.106 13.381 76.023 1.435  4.311  0.431  H031 I3Q 57 
I3Q H042 H9  H 0 0 N N N 60.429 14.289 74.161 1.759  5.499  -2.070 H042 I3Q 58 
I3Q H041 H10 H 0 0 N N N 61.874 14.390 75.224 0.609  4.183  -2.397 H041 I3Q 59 
I3Q H052 H11 H 0 0 N N N 60.886 16.178 76.547 -0.034 5.558  0.104  H052 I3Q 60 
I3Q H051 H12 H 0 0 N N N 60.598 16.612 74.828 0.006  6.690  -1.274 H051 I3Q 61 
I3Q H081 H13 H 0 0 N N N 56.281 15.241 76.990 -3.811 3.906  -1.842 H081 I3Q 62 
I3Q H091 H14 H 0 0 N N N 56.769 18.023 78.215 -2.989 2.092  0.475  H091 I3Q 63 
I3Q H122 H15 H 0 0 N N N 55.735 19.389 79.014 -2.993 0.184  -0.767 H122 I3Q 64 
I3Q H121 H16 H 0 0 N N N 54.302 20.321 78.463 -4.075 -0.959 -1.601 H121 I3Q 65 
I3Q H142 H17 H 0 0 N N N 52.289 20.397 80.617 -4.829 -3.242 0.396  H142 I3Q 66 
I3Q H141 H18 H 0 0 N N N 52.789 19.292 81.943 -5.263 -2.174 1.742  H141 I3Q 67 
I3Q H162 H19 H 0 0 N N N 52.045 18.942 78.113 -7.131 0.232  -0.546 H162 I3Q 68 
I3Q H161 H20 H 0 0 N N N 52.127 17.170 78.395 -6.484 0.086  1.112  H161 I3Q 69 
I3Q H191 H21 H 0 0 N N N 56.277 17.310 83.440 0.231  -3.369 1.073  H191 I3Q 70 
I3Q H231 H22 H 0 0 N N N 54.241 19.677 87.232 2.444  -7.452 -0.861 H231 I3Q 71 
I3Q H331 H23 H 0 0 N N N 61.385 13.219 80.041 2.600  1.966  0.932  H331 I3Q 72 
I3Q H332 H24 H 0 0 N N N 60.275 14.628 80.137 2.556  1.342  -0.735 H332 I3Q 73 
I3Q H362 H25 H 0 0 N N N 58.522 15.088 80.218 2.353  -0.113 -1.163 H362 I3Q 74 
I3Q H361 H26 H 0 0 N N N 56.888 14.348 80.123 3.206  -1.583 -1.699 H361 I3Q 75 
I3Q H381 H27 H 0 0 N N N 56.575 13.010 82.713 4.892  -2.597 0.008  H381 I3Q 76 
I3Q H391 H28 H 0 0 N N N 57.502 10.931 83.672 6.857  -1.964 1.351  H391 I3Q 77 
I3Q H401 H29 H 0 0 N N N 59.691 10.079 82.932 7.138  0.366  2.095  H401 I3Q 78 
I3Q H411 H30 H 0 0 N N N 60.981 11.294 81.240 5.459  2.060  1.497  H411 I3Q 79 
I3Q H441 H31 H 0 0 N N N 59.496 9.216  74.463 1.032  -0.071 -0.633 H441 I3Q 80 
I3Q H442 H32 H 0 0 N N N 61.228 9.686  74.547 -0.575 0.438  -0.062 H442 I3Q 81 
I3Q H452 H33 H 0 0 N N N 60.948 9.152  72.242 0.474  -1.422 1.304  H452 I3Q 82 
I3Q H451 H34 H 0 0 N N N 60.735 10.935 72.257 1.737  -0.268 1.794  H451 I3Q 83 
I3Q H471 H35 H 0 0 N N N 59.104 10.957 70.357 1.070  -0.296 4.086  H471 I3Q 84 
I3Q H472 H36 H 0 0 N N N 58.773 11.861 71.874 -0.180 -1.510 3.726  H472 I3Q 85 
I3Q H481 H37 H 0 0 N N N 56.848 11.050 70.028 -0.681 -0.160 5.788  H481 I3Q 86 
I3Q H482 H38 H 0 0 N N N 56.767 9.751  71.267 -0.749 1.299  4.771  H482 I3Q 87 
I3Q H061 H39 H 0 0 N N N 58.267 15.646 75.118 -1.838 5.451  -2.250 H061 I3Q 88 
I3Q H181 H40 H 0 0 N N N 53.577 17.851 82.445 -1.182 -1.270 1.158  H181 I3Q 89 
I3Q H311 H41 H 0 0 N N N 61.524 14.056 77.614 3.597  4.893  -1.062 H311 I3Q 90 
I3Q H371 H42 H 0 0 N N N 57.871 16.115 82.334 2.205  -2.140 0.883  H371 I3Q 91 
I3Q H431 H43 H 0 0 N N N 59.039 11.737 74.258 1.083  2.155  1.237  H431 I3Q 92 
I3Q H492 H44 H 0 0 N N N 55.331 11.565 71.773 -2.933 0.381  5.069  H492 I3Q 93 
I3Q H491 H45 H 0 0 N N N 56.501 11.443 72.906 -2.488 0.152  3.482  H491 I3Q 94 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I3Q C48 C47  SING N N 1  
I3Q C48 N49  SING N N 2  
I3Q C47 O46  SING N N 3  
I3Q O46 C45  SING N N 4  
I3Q C45 C44  SING N N 5  
I3Q C44 N43  SING N N 6  
I3Q N43 C02  SING N N 7  
I3Q C04 C05  SING N N 8  
I3Q C04 C03  SING N N 9  
I3Q C05 N06  SING N N 10 
I3Q C02 C03  SING N N 11 
I3Q C02 O01  DOUB N N 12 
I3Q N06 C07  SING N N 13 
I3Q C03 N31  SING N N 14 
I3Q C07 C08  SING N N 15 
I3Q C07 O30  DOUB N N 16 
I3Q C08 C09  DOUB N E 17 
I3Q N31 C32  SING N N 18 
I3Q O29 C10  DOUB N N 19 
I3Q C09 C10  SING N N 20 
I3Q C10 N11  SING N N 21 
I3Q O42 C32  DOUB N N 22 
I3Q C32 C33  SING N N 23 
I3Q N11 C16  SING N N 24 
I3Q N11 C12  SING N N 25 
I3Q C16 C15  SING N N 26 
I3Q C12 C13  SING N N 27 
I3Q C33 C34  SING N N 28 
I3Q C15 C14  SING N N 29 
I3Q C13 C14  SING N N 30 
I3Q C13 C17  SING N N 31 
I3Q C36 C35  SING N N 32 
I3Q C36 N37  SING N N 33 
I3Q C34 C35  DOUB Y N 34 
I3Q C34 C41  SING Y N 35 
I3Q O28 C17  DOUB N N 36 
I3Q C17 N18  SING N N 37 
I3Q O27 C26  DOUB N N 38 
I3Q C35 C38  SING Y N 39 
I3Q C41 C40  DOUB Y N 40 
I3Q N37 C26  SING N N 41 
I3Q C26 C19  SING N N 42 
I3Q N18 C19  SING N N 43 
I3Q C38 C39  DOUB Y N 44 
I3Q C40 C39  SING Y N 45 
I3Q C19 C20  SING N N 46 
I3Q C20 C21  SING N N 47 
I3Q C21 C22  DOUB Y N 48 
I3Q C21 O25  SING Y N 49 
I3Q C22 C23  SING Y N 50 
I3Q O25 C24  SING Y N 51 
I3Q C23 C24  DOUB Y N 52 
I3Q C13 H131 SING N N 53 
I3Q C15 H151 SING N N 54 
I3Q C15 H152 SING N N 55 
I3Q C20 H201 SING N N 56 
I3Q C20 H202 SING N N 57 
I3Q C22 H221 SING N N 58 
I3Q C24 H241 SING N N 59 
I3Q C03 H031 SING N N 60 
I3Q C04 H042 SING N N 61 
I3Q C04 H041 SING N N 62 
I3Q C05 H052 SING N N 63 
I3Q C05 H051 SING N N 64 
I3Q C08 H081 SING N N 65 
I3Q C09 H091 SING N N 66 
I3Q C12 H122 SING N N 67 
I3Q C12 H121 SING N N 68 
I3Q C14 H142 SING N N 69 
I3Q C14 H141 SING N N 70 
I3Q C16 H162 SING N N 71 
I3Q C16 H161 SING N N 72 
I3Q C19 H191 SING N N 73 
I3Q C23 H231 SING N N 74 
I3Q C33 H331 SING N N 75 
I3Q C33 H332 SING N N 76 
I3Q C36 H362 SING N N 77 
I3Q C36 H361 SING N N 78 
I3Q C38 H381 SING N N 79 
I3Q C39 H391 SING N N 80 
I3Q C40 H401 SING N N 81 
I3Q C41 H411 SING N N 82 
I3Q C44 H441 SING N N 83 
I3Q C44 H442 SING N N 84 
I3Q C45 H452 SING N N 85 
I3Q C45 H451 SING N N 86 
I3Q C47 H471 SING N N 87 
I3Q C47 H472 SING N N 88 
I3Q C48 H481 SING N N 89 
I3Q C48 H482 SING N N 90 
I3Q N06 H061 SING N N 91 
I3Q N18 H181 SING N N 92 
I3Q N31 H311 SING N N 93 
I3Q N37 H371 SING N N 94 
I3Q N43 H431 SING N N 95 
I3Q N49 H492 SING N N 96 
I3Q N49 H491 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I3Q SMILES           ACDLabs              12.01 "NCCOCCNC(=O)C1CCNC(=O)C=CC(=O)N2CCCC(C2)C(=O)NC(Cc2ccco2)C(=O)NCc2ccccc2CC(=O)N1"                                                                                                                                                                                                                   
I3Q InChI            InChI                1.03  "InChI=1S/C34H45N7O8/c35-12-17-48-18-14-37-33(46)27-11-13-36-29(42)9-10-31(44)41-15-3-7-25(22-41)32(45)40-28(20-26-8-4-16-49-26)34(47)38-21-24-6-2-1-5-23(24)19-30(43)39-27/h1-2,4-6,8-10,16,25,27-28H,3,7,11-15,17-22,35H2,(H,36,42)(H,37,46)(H,38,47)(H,39,43)(H,40,45)/b10-9+/t25-,27+,28+/m1/s1" 
I3Q InChIKey         InChI                1.03  VANFPLOBYMMNKK-UHXQFLPPSA-N                                                                                                                                                                                                                                                                          
I3Q SMILES_CANONICAL CACTVS               3.385 "NCCOCCNC(=O)[C@@H]1CCNC(=O)\C=C\C(=O)[N@]2CCC[C@H](C2)C(=O)N[C@@H](Cc3occc3)C(=O)NCc4ccccc4CC(=O)N1"                                                                                                                                                                                                
I3Q SMILES           CACTVS               3.385 "NCCOCCNC(=O)[CH]1CCNC(=O)C=CC(=O)[N]2CCC[CH](C2)C(=O)N[CH](Cc3occc3)C(=O)NCc4ccccc4CC(=O)N1"                                                                                                                                                                                                        
I3Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(=O)N[C@@H](CCNC(=O)/C=C/C(=O)N3CCC[C@H](C3)C(=O)N[C@H](C(=O)NC2)Cc4ccco4)C(=O)NCCOCCN"                                                                                                                                                                                                
I3Q SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(=O)NC(CCNC(=O)C=CC(=O)N3CCCC(C3)C(=O)NC(C(=O)NC2)Cc4ccco4)C(=O)NCCOCCN"                                                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
I3Q "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,7R,11S,13E,19S)-N-[2-(2-aminoethoxy)ethyl]-4-[(furan-2-yl)methyl]-3,6,12,15,21-pentaoxo-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-octadecahydro-2H-7,11-methano-2,5,11,16,20-benzopentaazacyclotetracosine-19-carboxamide" 
I3Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},4~{S},17~{S},22~{E})-~{N}-[2-(2-azanylethoxy)ethyl]-4-(furan-2-ylmethyl)-2,5,15,21,24-pentakis(oxidanylidene)-3,6,16,20,25-pentazatricyclo[23.3.1.0^{8,13}]nonacosa-8(13),9,11,22-tetraene-17-carboxamide"                  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I3Q "Create component" 2022-01-10 RCSB 
I3Q "Initial release"  2022-08-24 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      I3Q 
_pdbx_chem_comp_synonyms.name         "Macrocyclic Inhibitor JOMBt" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
