data_GQQ
# 
_chem_comp.id                                    GQQ 
_chem_comp.name                                  "~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H44 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-10-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.762 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GQQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HTP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GQQ C4  C1  C 0 1 Y N N N N N 56.642 -133.821 33.060 7.824  -2.006 1.173  C4  GQQ 1  
GQQ C6  C2  C 0 1 Y N N N N N 58.394 -135.354 33.630 6.774  -0.342 -0.003 C6  GQQ 2  
GQQ C7  C3  C 0 1 N N N N N N 59.599 -135.564 34.292 5.539  0.237  -0.583 C7  GQQ 3  
GQQ C10 C4  C 0 1 N N N N N N 61.302 -134.378 36.732 1.966  -0.269 -0.086 C10 GQQ 4  
GQQ C13 C5  C 0 1 N N N N N N 62.842 -135.686 39.727 -1.638 0.317  0.100  C13 GQQ 5  
GQQ C15 C6  C 0 1 N N S N N N 63.674 -135.370 42.030 -4.073 0.389  0.126  C15 GQQ 6  
GQQ C17 C7  C 0 1 Y N N N N N 64.266 -132.992 42.201 -4.897 -1.946 0.259  C17 GQQ 7  
GQQ C20 C8  C 0 1 Y N N N N N 65.370 -130.689 41.006 -4.399 -4.553 -0.512 C20 GQQ 8  
GQQ C21 C9  C 0 1 N N N N N N 65.942 -129.587 40.370 -4.128 -5.975 -0.932 C21 GQQ 9  
GQQ C24 C10 C 0 1 Y N N N N N 64.951 -133.061 40.970 -5.413 -2.425 -0.930 C24 GQQ 10 
GQQ C26 C11 C 0 1 N N N N N N 61.864 -136.703 43.271 -3.385 2.767  -0.213 C26 GQQ 11 
GQQ C28 C12 C 0 1 N N N N N N 61.314 -139.424 42.051 -2.468 5.387  -0.698 C28 GQQ 12 
GQQ C18 C13 C 0 1 Y N N N N N 64.155 -131.740 42.821 -4.128 -2.769 1.061  C18 GQQ 13 
GQQ C19 C14 C 0 1 Y N N N N N 64.702 -130.596 42.238 -3.879 -4.072 0.675  C19 GQQ 14 
GQQ N22 N1  N 0 1 N N N N N N 65.076 -128.415 40.379 -5.179 -6.852 -0.401 N22 GQQ 15 
GQQ C23 C15 C 0 1 Y N N N N N 65.490 -131.926 40.385 -5.160 -3.727 -1.318 C23 GQQ 16 
GQQ C16 C16 C 0 1 N N N N N N 63.696 -134.060 42.877 -5.169 -0.524 0.680  C16 GQQ 17 
GQQ C25 C17 C 0 1 N N N N N N 63.353 -136.636 42.858 -4.414 1.846  0.446  C25 GQQ 18 
GQQ S27 S1  S 0 1 N N N N N N 61.229 -138.405 43.511 -3.789 4.494  0.166  S27 GQQ 19 
GQQ O29 O1  O 0 1 N N N N N N 59.761 -138.291 43.923 -5.030 4.815  -0.449 O29 GQQ 20 
GQQ O30 O2  O 0 1 N N N N N N 61.992 -139.114 44.612 -3.635 4.699  1.564  O30 GQQ 21 
GQQ N14 N2  N 0 1 N N N N N N 62.675 -135.234 40.973 -2.790 0.041  0.742  N14 GQQ 22 
GQQ O31 O3  O 0 1 N N N N N N 63.822 -136.296 39.299 -1.663 0.853  -0.988 O31 GQQ 23 
GQQ C12 C18 C 0 1 N N S N N N 61.584 -135.487 38.907 -0.318 -0.041 0.733  C12 GQQ 24 
GQQ C32 C19 C 0 1 N N N N N N 60.730 -136.726 39.279 -0.179 0.689  2.070  C32 GQQ 25 
GQQ C33 C20 C 0 1 N N N N N N 59.420 -136.873 38.476 1.102  0.231  2.771  C33 GQQ 26 
GQQ C38 C21 C 0 1 N N N N N N 58.653 -138.090 39.031 1.305  1.050  4.047  C38 GQQ 27 
GQQ C34 C22 C 0 1 N N N N N N 58.566 -135.588 38.567 0.984  -1.252 3.129  C34 GQQ 28 
GQQ N11 N3  N 0 1 N N N N N N 61.806 -135.398 37.453 0.775  0.358  -0.157 N11 GQQ 29 
GQQ O39 O4  O 0 1 N N N N N N 60.644 -133.450 37.198 2.104  -1.226 0.646  O39 GQQ 30 
GQQ C9  C23 C 0 1 N N S N N N 61.548 -134.456 35.233 3.126  0.219  -0.915 C9  GQQ 31 
GQQ C40 C24 C 0 1 N N N N N N 62.312 -133.255 34.680 2.897  -0.155 -2.381 C40 GQQ 32 
GQQ C41 C25 C 0 1 N N N N N N 63.784 -133.198 35.118 1.690  0.615  -2.921 C41 GQQ 33 
GQQ C43 C26 C 0 1 N N N N N N 64.414 -131.934 34.502 2.013  2.109  -2.959 C43 GQQ 34 
GQQ C42 C27 C 0 1 N N N N N N 64.550 -134.453 34.663 1.365  0.127  -4.335 C42 GQQ 35 
GQQ N8  N4  N 0 1 N N N N N N 60.252 -134.435 34.573 4.363  -0.405 -0.440 N8  GQQ 36 
GQQ O44 O5  O 0 1 N N N N N N 60.013 -136.695 34.563 5.587  1.290  -1.187 O44 GQQ 37 
GQQ N6  N5  N 0 1 Y N N N N N 57.849 -134.119 33.703 6.724  -1.494 0.659  N6  GQQ 38 
GQQ C3  C28 C 0 1 Y N N N N N 55.994 -134.822 32.317 9.034  -1.342 1.029  C3  GQQ 39 
GQQ N2  N6  N 0 1 Y N N N N N 56.563 -136.119 32.233 9.088  -0.194 0.377  N2  GQQ 40 
GQQ C1  C29 C 0 1 Y N N N N N 57.779 -136.381 32.894 7.990  0.326  -0.141 C1  GQQ 41 
GQQ H1  H1  H 0 1 N N N N N N 56.213 -132.832 33.134 7.783  -2.942 1.710  H1  GQQ 42 
GQQ H2  H2  H 0 1 N N N N N N 64.668 -135.499 41.577 -4.004 0.261  -0.954 H2  GQQ 43 
GQQ H3  H3  H 0 1 N N N N N N 66.157 -129.857 39.325 -4.119 -6.036 -2.020 H3  GQQ 44 
GQQ H4  H4  H 0 1 N N N N N N 66.881 -129.334 40.884 -3.160 -6.290 -0.543 H4  GQQ 45 
GQQ H5  H5  H 0 1 N N N N N N 65.057 -134.015 40.475 -6.014 -1.782 -1.556 H5  GQQ 46 
GQQ H6  H6  H 0 1 N N N N N N 61.743 -136.153 44.216 -2.391 2.534  0.169  H6  GQQ 47 
GQQ H7  H7  H 0 1 N N N N N N 61.266 -136.219 42.485 -3.404 2.618  -1.293 H7  GQQ 48 
GQQ H8  H8  H 0 1 N N N N N N 60.916 -140.424 42.278 -2.513 5.161  -1.764 H8  GQQ 49 
GQQ H9  H9  H 0 1 N N N N N N 60.718 -138.965 41.249 -2.595 6.459  -0.548 H9  GQQ 50 
GQQ H10 H10 H 0 1 N N N N N N 62.361 -139.511 41.725 -1.501 5.077  -0.302 H10 GQQ 51 
GQQ H11 H11 H 0 1 N N N N N N 63.638 -131.659 43.766 -3.722 -2.393 1.988  H11 GQQ 52 
GQQ H12 H12 H 0 1 N N N N N N 64.612 -129.641 42.733 -3.285 -4.718 1.305  H12 GQQ 53 
GQQ H13 H13 H 0 1 N N N N N N 65.534 -127.658 39.912 -5.019 -7.812 -0.669 H13 GQQ 54 
GQQ H14 H14 H 0 1 N N N N N N 64.221 -128.629 39.907 -5.251 -6.764 0.602  H14 GQQ 55 
GQQ H16 H16 H 0 1 N N N N N N 66.007 -132.004 39.440 -5.563 -4.102 -2.248 H16 GQQ 56 
GQQ H17 H17 H 0 1 N N N N N N 62.662 -133.796 43.143 -5.178 -0.462 1.768  H17 GQQ 57 
GQQ H18 H18 H 0 1 N N N N N N 64.275 -134.244 43.794 -6.136 -0.208 0.290  H18 GQQ 58 
GQQ H19 H19 H 0 1 N N N N N N 63.593 -137.524 42.255 -5.408 2.079  0.064  H19 GQQ 59 
GQQ H20 H20 H 0 1 N N N N N N 63.973 -136.631 43.767 -4.395 1.995  1.526  H20 GQQ 60 
GQQ H21 H21 H 0 1 N N N N N N 61.815 -134.775 41.195 -2.770 -0.387 1.612  H21 GQQ 61 
GQQ H22 H22 H 0 1 N N N N N N 61.064 -134.583 39.258 -0.275 -1.117 0.900  H22 GQQ 62 
GQQ H23 H23 H 0 1 N N N N N N 60.472 -136.656 40.346 -0.132 1.764  1.894  H23 GQQ 63 
GQQ H24 H24 H 0 1 N N N N N N 61.339 -137.626 39.108 -1.039 0.461  2.700  H24 GQQ 64 
GQQ H25 H25 H 0 1 N N N N N N 59.669 -137.060 37.421 1.952  0.377  2.105  H25 GQQ 65 
GQQ H26 H26 H 0 1 N N N N N N 59.284 -138.988 38.954 2.218  0.723  4.546  H26 GQQ 66 
GQQ H27 H27 H 0 1 N N N N N N 58.397 -137.912 40.086 1.389  2.106  3.792  H27 GQQ 67 
GQQ H28 H28 H 0 1 N N N N N N 57.731 -138.238 38.450 0.455  0.903  4.713  H28 GQQ 68 
GQQ H29 H29 H 0 1 N N N N N N 59.137 -134.738 38.165 0.839  -1.835 2.220  H29 GQQ 69 
GQQ H30 H30 H 0 1 N N N N N N 57.643 -135.719 37.982 1.896  -1.578 3.629  H30 GQQ 70 
GQQ H31 H31 H 0 1 N N N N N N 58.309 -135.392 39.619 0.133  -1.398 3.795  H31 GQQ 71 
GQQ H32 H32 H 0 1 N N N N N N 62.340 -136.107 36.993 0.642  1.074  -0.798 H32 GQQ 72 
GQQ H33 H33 H 0 1 N N N N N N 62.091 -135.382 34.993 3.207  1.302  -0.825 H33 GQQ 73 
GQQ H34 H34 H 0 1 N N N N N N 61.812 -132.338 35.025 3.782  0.102  -2.964 H34 GQQ 74 
GQQ H35 H35 H 0 1 N N N N N N 62.279 -133.299 33.581 2.709  -1.226 -2.458 H35 GQQ 75 
GQQ H36 H36 H 0 1 N N N N N N 63.831 -133.125 36.215 0.831  0.445  -2.272 H36 GQQ 76 
GQQ H37 H37 H 0 1 N N N N N N 63.857 -131.046 34.836 1.130  2.665  -3.274 H37 GQQ 77 
GQQ H38 H38 H 0 1 N N N N N N 65.462 -131.852 34.826 2.316  2.441  -1.966 H38 GQQ 78 
GQQ H39 H39 H 0 1 N N N N N N 64.373 -132.002 33.405 2.825  2.288  -3.665 H39 GQQ 79 
GQQ H40 H40 H 0 1 N N N N N N 64.090 -135.346 35.110 1.135  -0.938 -4.308 H40 GQQ 80 
GQQ H41 H41 H 0 1 N N N N N N 64.510 -134.530 33.566 0.505  0.675  -4.720 H41 GQQ 81 
GQQ H42 H42 H 0 1 N N N N N N 65.599 -134.380 34.987 2.224  0.297  -4.984 H42 GQQ 82 
GQQ H43 H43 H 0 1 N N N N N N 59.842 -133.557 34.325 4.335  -1.280 -0.021 H43 GQQ 83 
GQQ H44 H44 H 0 1 N N N N N N 55.065 -134.605 31.811 9.934  -1.764 1.452  H44 GQQ 84 
GQQ H45 H45 H 0 1 N N N N N N 58.233 -137.359 32.836 8.035  1.264  -0.674 H45 GQQ 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GQQ N2  C3  DOUB Y N 1  
GQQ N2  C1  SING Y N 2  
GQQ C3  C4  SING Y N 3  
GQQ C1  C6  DOUB Y N 4  
GQQ C4  N6  DOUB Y N 5  
GQQ C6  N6  SING Y N 6  
GQQ C6  C7  SING N N 7  
GQQ C7  O44 DOUB N N 8  
GQQ C7  N8  SING N N 9  
GQQ C43 C41 SING N N 10 
GQQ N8  C9  SING N N 11 
GQQ C42 C41 SING N N 12 
GQQ C40 C41 SING N N 13 
GQQ C40 C9  SING N N 14 
GQQ C9  C10 SING N N 15 
GQQ C10 O39 DOUB N N 16 
GQQ C10 N11 SING N N 17 
GQQ N11 C12 SING N N 18 
GQQ C33 C34 SING N N 19 
GQQ C33 C38 SING N N 20 
GQQ C33 C32 SING N N 21 
GQQ C12 C32 SING N N 22 
GQQ C12 C13 SING N N 23 
GQQ O31 C13 DOUB N N 24 
GQQ C13 N14 SING N N 25 
GQQ C21 N22 SING N N 26 
GQQ C21 C20 SING N N 27 
GQQ C23 C24 DOUB Y N 28 
GQQ C23 C20 SING Y N 29 
GQQ C24 C17 SING Y N 30 
GQQ N14 C15 SING N N 31 
GQQ C20 C19 DOUB Y N 32 
GQQ C15 C25 SING N N 33 
GQQ C15 C16 SING N N 34 
GQQ C28 S27 SING N N 35 
GQQ C17 C18 DOUB Y N 36 
GQQ C17 C16 SING N N 37 
GQQ C19 C18 SING Y N 38 
GQQ C25 C26 SING N N 39 
GQQ C26 S27 SING N N 40 
GQQ S27 O29 DOUB N N 41 
GQQ S27 O30 DOUB N N 42 
GQQ C4  H1  SING N N 43 
GQQ C15 H2  SING N N 44 
GQQ C21 H3  SING N N 45 
GQQ C21 H4  SING N N 46 
GQQ C24 H5  SING N N 47 
GQQ C26 H6  SING N N 48 
GQQ C26 H7  SING N N 49 
GQQ C28 H8  SING N N 50 
GQQ C28 H9  SING N N 51 
GQQ C28 H10 SING N N 52 
GQQ C18 H11 SING N N 53 
GQQ C19 H12 SING N N 54 
GQQ N22 H13 SING N N 55 
GQQ N22 H14 SING N N 56 
GQQ C23 H16 SING N N 57 
GQQ C16 H17 SING N N 58 
GQQ C16 H18 SING N N 59 
GQQ C25 H19 SING N N 60 
GQQ C25 H20 SING N N 61 
GQQ N14 H21 SING N N 62 
GQQ C12 H22 SING N N 63 
GQQ C32 H23 SING N N 64 
GQQ C32 H24 SING N N 65 
GQQ C33 H25 SING N N 66 
GQQ C38 H26 SING N N 67 
GQQ C38 H27 SING N N 68 
GQQ C38 H28 SING N N 69 
GQQ C34 H29 SING N N 70 
GQQ C34 H30 SING N N 71 
GQQ C34 H31 SING N N 72 
GQQ N11 H32 SING N N 73 
GQQ C9  H33 SING N N 74 
GQQ C40 H34 SING N N 75 
GQQ C40 H35 SING N N 76 
GQQ C41 H36 SING N N 77 
GQQ C43 H37 SING N N 78 
GQQ C43 H38 SING N N 79 
GQQ C43 H39 SING N N 80 
GQQ C42 H40 SING N N 81 
GQQ C42 H41 SING N N 82 
GQQ C42 H42 SING N N 83 
GQQ N8  H43 SING N N 84 
GQQ C3  H44 SING N N 85 
GQQ C1  H45 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GQQ InChI            InChI                1.03  "InChI=1S/C29H44N6O5S/c1-19(2)14-24(34-28(37)25(15-20(3)4)35-29(38)26-18-31-11-12-32-26)27(36)33-23(10-13-41(5,39)40)16-21-6-8-22(17-30)9-7-21/h6-9,11-12,18-20,23-25H,10,13-17,30H2,1-5H3,(H,33,36)(H,34,37)(H,35,38)/t23-,24+,25+/m1/s1" 
GQQ InChIKey         InChI                1.03  COXIIRGPLZWLTL-DSITVLBTSA-N                                                                                                                                                                                                                
GQQ SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)c1cnccn1)C(=O)N[C@H](CC[S](C)(=O)=O)Cc2ccc(CN)cc2"                                                                                                                                                   
GQQ SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](CC(C)C)NC(=O)c1cnccn1)C(=O)N[CH](CC[S](C)(=O)=O)Cc2ccc(CN)cc2"                                                                                                                                                      
GQQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)c2cnccn2"                                                                                                                                                   
GQQ SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NC(CC(C)C)C(=O)NC(CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)c2cnccn2"                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           GQQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GQQ "Create component" 2018-10-04 EBI  
GQQ "Initial release"  2019-01-30 RCSB 
GQQ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GQQ 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
