data_GKQ
# 
_chem_comp.id                                    GKQ 
_chem_comp.name                                  "~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 Cl N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-23 
_chem_comp.pdbx_modified_date                    2018-11-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.887 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GKQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HPX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GKQ C   C1  C  0 1 Y N N 3.143  16.802 12.925 -1.901 2.480  -0.220 C   GKQ 1  
GKQ N   N1  N  0 1 Y N N 4.173  17.697 13.219 -3.030 3.227  -0.335 N   GKQ 2  
GKQ O   O1  O  0 1 N N N -1.299 15.450 12.718 2.106  3.221  0.685  O   GKQ 3  
GKQ C1  C2  C  0 1 Y N N 3.528  15.957 11.889 -2.265 1.145  -0.480 C1  GKQ 4  
GKQ C2  C3  C  0 1 Y N N 5.128  17.378 12.383 -4.031 2.458  -0.646 C2  GKQ 5  
GKQ C3  C4  C  0 1 N N N 5.707  15.689 10.596 -4.454 0.009  -1.071 C3  GKQ 6  
GKQ C12 C5  C  0 1 N N N -0.371 15.550 13.518 1.776  2.075  0.452  C12 GKQ 7  
GKQ N3  N2  N  0 1 N N N -0.567 15.601 14.841 2.693  1.088  0.491  N3  GKQ 8  
GKQ C13 C6  C  0 1 N N N -1.873 15.887 15.422 4.089  1.398  0.813  C13 GKQ 9  
GKQ C14 C7  C  0 1 Y N N -1.802 16.748 16.658 4.902  0.129  0.791  C14 GKQ 10 
GKQ C17 C8  C  0 1 Y N N -2.662 16.532 17.734 5.040  -0.624 1.942  C17 GKQ 11 
GKQ C18 C9  C  0 1 Y N N -2.605 17.336 18.861 5.786  -1.788 1.921  C18 GKQ 12 
GKQ C19 C10 C  0 1 Y N N -1.689 18.373 18.936 6.395  -2.198 0.751  C19 GKQ 13 
GKQ C16 C11 C  0 1 Y N N -0.845 18.590 17.861 6.258  -1.444 -0.401 C16 GKQ 14 
GKQ CL  CL1 CL 0 0 N N N 0.288  19.922 17.914 7.023  -1.959 -1.872 CL  GKQ 15 
GKQ C15 C12 C  0 1 Y N N -0.886 17.793 16.733 5.506  -0.283 -0.382 C15 GKQ 16 
GKQ C11 C13 C  0 1 Y N N 1.043  15.637 13.040 0.369  1.763  0.128  C11 GKQ 17 
GKQ C10 C14 C  0 1 Y N N 1.889  16.646 13.513 -0.576 2.783  0.088  C10 GKQ 18 
GKQ C20 C15 C  0 1 Y N N 1.473  14.778 12.018 -0.009 0.440  -0.138 C20 GKQ 19 
GKQ C9  C16 C  0 1 Y N N 2.713  14.940 11.422 -1.307 0.139  -0.435 C9  GKQ 20 
GKQ N1  N3  N  0 1 Y N N 4.820  16.344 11.560 -3.617 1.165  -0.743 N1  GKQ 21 
GKQ C4  C17 C  0 1 N N N 5.759  16.443 9.291  -4.919 -0.668 0.220  C4  GKQ 22 
GKQ N2  N4  N  0 1 N N N 6.714  15.855 8.352  -5.758 -1.828 -0.109 N2  GKQ 23 
GKQ C7  C18 C  0 1 N N N 6.159  14.745 7.569  -6.029 -2.642 1.090  C7  GKQ 24 
GKQ C8  C19 C  0 1 N N N 7.194  14.514 6.483  -7.562 -2.739 1.240  C8  GKQ 25 
GKQ C6  C20 C  0 1 N N N 7.869  15.894 6.301  -8.073 -2.453 -0.197 C6  GKQ 26 
GKQ C5  C21 C  0 1 N N N 7.208  16.793 7.341  -7.049 -1.400 -0.689 C5  GKQ 27 
GKQ H1  H1  H  0 1 N N N 6.077  17.892 12.351 -5.046 2.795  -0.799 H1  GKQ 28 
GKQ H2  H2  H  0 1 N N N 5.338  14.670 10.406 -5.323 0.339  -1.641 H2  GKQ 29 
GKQ H3  H3  H  0 1 N N N 6.721  15.638 11.020 -3.878 -0.700 -1.665 H3  GKQ 30 
GKQ H4  H4  H  0 1 N N N 0.208  15.437 15.451 2.430  0.173  0.306  H4  GKQ 31 
GKQ H5  H5  H  0 1 N N N -2.483 16.407 14.669 4.485  2.097  0.078  H5  GKQ 32 
GKQ H6  H6  H  0 1 N N N -2.353 14.934 15.688 4.141  1.845  1.806  H6  GKQ 33 
GKQ H7  H7  H  0 1 N N N -3.382 15.728 17.688 4.564  -0.304 2.857  H7  GKQ 34 
GKQ H8  H8  H  0 1 N N N -3.278 17.153 19.686 5.893  -2.376 2.821  H8  GKQ 35 
GKQ H9  H9  H  0 1 N N N -1.635 18.999 19.815 6.979  -3.107 0.735  H9  GKQ 36 
GKQ H10 H10 H  0 1 N N N -0.209 17.980 15.912 5.396  0.304  -1.282 H10 GKQ 37 
GKQ H11 H11 H  0 1 N N N 1.576  17.293 14.319 -0.285 3.803  0.294  H11 GKQ 38 
GKQ H12 H12 H  0 1 N N N 0.827  13.977 11.690 0.730  -0.346 -0.105 H12 GKQ 39 
GKQ H13 H13 H  0 1 N N N 3.034  14.293 10.619 -1.590 -0.884 -0.635 H13 GKQ 40 
GKQ H14 H14 H  0 1 N N N 6.056  17.483 9.494  -4.051 -0.998 0.790  H14 GKQ 41 
GKQ H15 H15 H  0 1 N N N 4.759  16.430 8.834  -5.496 0.041  0.814  H15 GKQ 42 
GKQ H17 H17 H  0 1 N N N 5.188  15.021 7.132  -5.605 -3.638 0.965  H17 GKQ 43 
GKQ H18 H18 H  0 1 N N N 6.039  13.847 8.193  -5.597 -2.162 1.969  H18 GKQ 44 
GKQ H19 H19 H  0 1 N N N 6.713  14.189 5.549  -7.855 -3.738 1.562  H19 GKQ 45 
GKQ H20 H20 H  0 1 N N N 7.929  13.759 6.799  -7.929 -1.987 1.939  H20 GKQ 46 
GKQ H21 H21 H  0 1 N N N 8.952  15.823 6.483  -8.033 -3.353 -0.811 H21 GKQ 47 
GKQ H22 H22 H  0 1 N N N 7.692  16.281 5.286  -9.081 -2.039 -0.178 H22 GKQ 48 
GKQ H23 H23 H  0 1 N N N 7.939  17.490 7.777  -7.319 -0.409 -0.324 H23 GKQ 49 
GKQ H24 H24 H  0 1 N N N 6.378  17.362 6.896  -6.996 -1.403 -1.778 H24 GKQ 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GKQ C6  C8  SING N N 1  
GKQ C6  C5  SING N N 2  
GKQ C8  C7  SING N N 3  
GKQ C5  N2  SING N N 4  
GKQ C7  N2  SING N N 5  
GKQ N2  C4  SING N N 6  
GKQ C4  C3  SING N N 7  
GKQ C3  N1  SING N N 8  
GKQ C9  C1  DOUB Y N 9  
GKQ C9  C20 SING Y N 10 
GKQ N1  C1  SING Y N 11 
GKQ N1  C2  SING Y N 12 
GKQ C1  C   SING Y N 13 
GKQ C20 C11 DOUB Y N 14 
GKQ C2  N   DOUB Y N 15 
GKQ O   C12 DOUB N N 16 
GKQ C   N   SING Y N 17 
GKQ C   C10 DOUB Y N 18 
GKQ C11 C10 SING Y N 19 
GKQ C11 C12 SING N N 20 
GKQ C12 N3  SING N N 21 
GKQ N3  C13 SING N N 22 
GKQ C13 C14 SING N N 23 
GKQ C14 C15 DOUB Y N 24 
GKQ C14 C17 SING Y N 25 
GKQ C15 C16 SING Y N 26 
GKQ C17 C18 DOUB Y N 27 
GKQ C16 CL  SING N N 28 
GKQ C16 C19 DOUB Y N 29 
GKQ C18 C19 SING Y N 30 
GKQ C2  H1  SING N N 31 
GKQ C3  H2  SING N N 32 
GKQ C3  H3  SING N N 33 
GKQ N3  H4  SING N N 34 
GKQ C13 H5  SING N N 35 
GKQ C13 H6  SING N N 36 
GKQ C17 H7  SING N N 37 
GKQ C18 H8  SING N N 38 
GKQ C19 H9  SING N N 39 
GKQ C15 H10 SING N N 40 
GKQ C10 H11 SING N N 41 
GKQ C20 H12 SING N N 42 
GKQ C9  H13 SING N N 43 
GKQ C4  H14 SING N N 44 
GKQ C4  H15 SING N N 45 
GKQ C7  H17 SING N N 46 
GKQ C7  H18 SING N N 47 
GKQ C8  H19 SING N N 48 
GKQ C8  H20 SING N N 49 
GKQ C6  H21 SING N N 50 
GKQ C6  H22 SING N N 51 
GKQ C5  H23 SING N N 52 
GKQ C5  H24 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GKQ InChI            InChI                1.03  "InChI=1S/C21H23ClN4O/c22-18-5-3-4-16(12-18)14-23-21(27)17-6-7-20-19(13-17)24-15-26(20)11-10-25-8-1-2-9-25/h3-7,12-13,15H,1-2,8-11,14H2,(H,23,27)" 
GKQ InChIKey         InChI                1.03  KDORBCZWJTXUAC-UHFFFAOYSA-N                                                                                                                        
GKQ SMILES_CANONICAL CACTVS               3.385 "Clc1cccc(CNC(=O)c2ccc3n(CCN4CCCC4)cnc3c2)c1"                                                                                                      
GKQ SMILES           CACTVS               3.385 "Clc1cccc(CNC(=O)c2ccc3n(CCN4CCCC4)cnc3c2)c1"                                                                                                      
GKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)Cl)CNC(=O)c2ccc3c(c2)ncn3CCN4CCCC4"                                                                                                    
GKQ SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)Cl)CNC(=O)c2ccc3c(c2)ncn3CCN4CCCC4"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GKQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GKQ "Create component" 2018-09-23 EBI  
GKQ "Initial release"  2018-11-28 RCSB 
# 
