data_G5Q
#

_chem_comp.id                                   G5Q
_chem_comp.name                                 "5'-O-(N-(L-aspartyl)-sulfamoyl)N3-methyluridine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H20 N4 O11 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-29
_chem_comp.pdbx_modified_date                   2019-12-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       452.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G5Q
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6HHV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G5Q  N      N1   N  0  1  N  N  N  -18.616  -6.798  -14.578   2.745   2.508   0.624  N      G5Q   1  
G5Q  CA     C1   C  0  1  N  N  S  -17.889  -5.545  -14.862   3.374   1.398  -0.105  CA     G5Q   2  
G5Q  C      C2   C  0  1  N  N  N  -18.620  -4.533  -13.974   2.982   0.091   0.535  C      G5Q   3  
G5Q  O      O1   O  0  1  N  N  N  -19.683  -4.745  -13.396   2.572   0.073   1.676  O      G5Q   4  
G5Q  CG     C3   C  0  1  N  N  N  -17.004  -5.682  -17.261   5.296   2.799  -0.805  CG     G5Q   5  
G5Q  CD     C4   C  0  1  N  N  N  -17.978  -5.013  -16.296   4.895   1.554  -0.058  CD     G5Q   6  
G5Q  OD1    O2   O  0  1  N  N  N  -15.814  -5.801  -16.904   6.591   3.140  -0.896  OD1    G5Q   7  
G5Q  OD2    O3   O  0  1  N  N  N  -17.465  -6.077  -18.363   4.451   3.492  -1.323  OD2    G5Q   8  
G5Q  "C1'"  C5   C  0  1  N  N  R  -22.619   1.008  -13.932  -2.800  -0.917   0.060  "C1'"  G5Q   9  
G5Q  C2     C6   C  0  1  N  N  N  -24.244   1.593  -12.223  -4.115   1.044   0.637  C2     G5Q  10  
G5Q  "C2'"  C7   C  0  1  N  N  R  -21.498   2.012  -14.247  -2.874  -1.537  -1.359  "C2'"  G5Q  11  
G5Q  "C3'"  C8   C  0  1  N  N  S  -20.299   1.102  -14.537  -2.004  -2.807  -1.204  "C3'"  G5Q  12  
G5Q  C3U    C9   C  0  1  N  N  N  -25.828   2.329  -10.518  -5.536   2.905   1.300  C3U    G5Q  13  
G5Q  C4     C10  C  0  1  N  N  N  -23.805   1.105   -9.840  -3.542   3.197  -0.067  C4     G5Q  14  
G5Q  "C4'"  C11  C  0  1  N  N  R  -20.968  -0.141  -15.097  -1.124  -2.515   0.027  "C4'"  G5Q  15  
G5Q  C5     C12  C  0  1  N  N  N  -22.570   0.506  -10.246  -2.413   2.665  -0.735  C5     G5Q  16  
G5Q  "C5'"  C13  C  0  1  N  N  N  -20.147  -1.401  -15.018   0.354  -2.592  -0.359  "C5'"  G5Q  17  
G5Q  C6     C14  C  0  1  N  N  N  -22.222   0.473  -11.542  -2.186   1.335  -0.686  C6     G5Q  18  
G5Q  N1     N2   N  0  1  N  N  N  -23.032   1.003  -12.516  -3.046   0.526   0.006  N1     G5Q  19  
G5Q  N3     N3   N  0  1  N  N  N  -24.585   1.637  -10.874  -4.365   2.366   0.604  N3     G5Q  20  
G5Q  N3S    N4   N  0  1  N  N  N  -18.014  -3.253  -13.828   3.088  -1.058  -0.161  N3S    G5Q  21  
G5Q  O1S    O4   O  0  1  N  N  N  -17.811  -0.866  -13.345   2.848  -3.498  -0.446  O1S    G5Q  22  
G5Q  O2     O5   O  0  1  N  N  N  -24.991   2.037  -13.077  -4.870   0.307   1.242  O2     G5Q  23  
G5Q  "O2'"  O6   O  0  1  N  N  N  -21.893   2.743  -15.400  -4.220  -1.878  -1.698  "O2'"  G5Q  24  
G5Q  O2S    O7   O  0  1  N  N  N  -18.866  -2.343  -11.662   3.292  -2.525   1.813  O2S    G5Q  25  
G5Q  "O3'"  O8   O  0  1  N  N  N  -19.424   1.656  -15.511  -2.827  -3.952  -0.973  "O3'"  G5Q  26  
G5Q  O4     O9   O  0  1  N  N  N  -24.211   1.163   -8.683  -3.766   4.393  -0.097  O4     G5Q  27  
G5Q  "O4'"  O10  O  0  1  N  N  N  -22.149  -0.283  -14.285  -1.445  -1.187   0.479  "O4'"  G5Q  28  
G5Q  "O5'"  O11  O  0  1  N  N  N  -20.041  -1.739  -13.611   1.161  -2.434   0.810  "O5'"  G5Q  29  
G5Q  S      S1   S  0  1  N  N  N  -18.590  -2.007  -13.013   2.658  -2.495   0.542  S      G5Q  30  
G5Q  H1     H1   H  0  1  N  N  N  -18.488  -7.048  -13.618   1.740   2.463   0.553  H1     G5Q  31  
G5Q  H2     H2   H  0  1  N  N  N  -19.590  -6.667  -14.761   3.039   2.519   1.589  H2     G5Q  32  
G5Q  H4     H4   H  0  1  N  N  N  -16.836  -5.625  -14.554   3.039   1.409  -1.143  H4     G5Q  33  
G5Q  H5     H5   H  0  1  N  N  N  -17.764  -3.934  -16.280   5.220   1.632   0.979  H5     G5Q  34  
G5Q  H6     H6   H  0  1  N  N  N  -19.001  -5.179  -16.665   5.364   0.685  -0.521  H6     G5Q  35  
G5Q  H7     H7   H  0  1  N  N  N  -15.319  -6.233  -17.590   6.799   3.947  -1.386  H7     G5Q  36  
G5Q  H8     H8   H  0  1  N  N  N  -23.489   1.265  -14.553  -3.513  -1.402   0.727  H8     G5Q  37  
G5Q  H9     H9   H  0  1  N  N  N  -21.299   2.661  -13.381  -2.447  -0.862  -2.101  H9     G5Q  38  
G5Q  H10    H10  H  0  1  N  N  N  -19.770   0.863  -13.602  -1.384  -2.956  -2.088  H10    G5Q  39  
G5Q  H11    H11  H  0  1  N  N  N  -25.972   2.287   -9.428  -5.262   3.167   2.323  H11    G5Q  40  
G5Q  H12    H12  H  0  1  N  N  N  -25.768   3.379  -10.840  -5.890   3.795   0.780  H12    G5Q  41  
G5Q  H13    H13  H  0  1  N  N  N  -26.676   1.840  -11.019  -6.326   2.155   1.316  H13    G5Q  42  
G5Q  H14    H14  H  0  1  N  N  N  -21.249   0.043  -16.145  -1.339  -3.236   0.816  H14    G5Q  43  
G5Q  H15    H15  H  0  1  N  N  N  -21.913   0.077   -9.504  -1.741   3.315  -1.278  H15    G5Q  44  
G5Q  H16    H16  H  0  1  N  N  N  -20.645  -2.214  -15.567   0.561  -3.560  -0.815  H16    G5Q  45  
G5Q  H17    H17  H  0  1  N  N  N  -19.147  -1.230  -15.444   0.586  -1.798  -1.069  H17    G5Q  46  
G5Q  H18    H18  H  0  1  N  N  N  -21.284   0.019  -11.825  -1.330   0.911  -1.190  H18    G5Q  47  
G5Q  H19    H19  H  0  1  N  N  N  -17.134  -3.120  -14.284   3.415  -1.044  -1.074  H19    G5Q  48  
G5Q  H20    H20  H  0  1  N  N  N  -22.636   3.295  -15.186  -4.317  -2.269  -2.577  H20    G5Q  49  
G5Q  H21    H21  H  0  1  N  N  N  -19.007   2.433  -15.158  -3.441  -4.147  -1.694  H21    G5Q  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G5Q  OD2    CG     DOUB  N  N   1  
G5Q  CG     OD1    SING  N  N   2  
G5Q  CG     CD     SING  N  N   3  
G5Q  CD     CA     SING  N  N   4  
G5Q  "O3'"  "C3'"  SING  N  N   5  
G5Q  "O2'"  "C2'"  SING  N  N   6  
G5Q  "C4'"  "C5'"  SING  N  N   7  
G5Q  "C4'"  "C3'"  SING  N  N   8  
G5Q  "C4'"  "O4'"  SING  N  N   9  
G5Q  "C5'"  "O5'"  SING  N  N  10  
G5Q  CA     N      SING  N  N  11  
G5Q  CA     C      SING  N  N  12  
G5Q  "C3'"  "C2'"  SING  N  N  13  
G5Q  "O4'"  "C1'"  SING  N  N  14  
G5Q  "C2'"  "C1'"  SING  N  N  15  
G5Q  C      N3S    SING  N  N  16  
G5Q  C      O      DOUB  N  N  17  
G5Q  "C1'"  N1     SING  N  N  18  
G5Q  N3S    S      SING  N  N  19  
G5Q  "O5'"  S      SING  N  N  20  
G5Q  O1S    S      DOUB  N  N  21  
G5Q  O2     C2     DOUB  N  N  22  
G5Q  S      O2S    DOUB  N  N  23  
G5Q  N1     C2     SING  N  N  24  
G5Q  N1     C6     SING  N  N  25  
G5Q  C2     N3     SING  N  N  26  
G5Q  C6     C5     DOUB  N  N  27  
G5Q  N3     C3U    SING  N  N  28  
G5Q  N3     C4     SING  N  N  29  
G5Q  C5     C4     SING  N  N  30  
G5Q  C4     O4     DOUB  N  N  31  
G5Q  N      H1     SING  N  N  32  
G5Q  N      H2     SING  N  N  33  
G5Q  CA     H4     SING  N  N  34  
G5Q  CD     H5     SING  N  N  35  
G5Q  CD     H6     SING  N  N  36  
G5Q  OD1    H7     SING  N  N  37  
G5Q  "C1'"  H8     SING  N  N  38  
G5Q  "C2'"  H9     SING  N  N  39  
G5Q  "C3'"  H10    SING  N  N  40  
G5Q  C3U    H11    SING  N  N  41  
G5Q  C3U    H12    SING  N  N  42  
G5Q  C3U    H13    SING  N  N  43  
G5Q  "C4'"  H14    SING  N  N  44  
G5Q  C5     H15    SING  N  N  45  
G5Q  "C5'"  H16    SING  N  N  46  
G5Q  "C5'"  H17    SING  N  N  47  
G5Q  C6     H18    SING  N  N  48  
G5Q  N3S    H19    SING  N  N  49  
G5Q  "O2'"  H20    SING  N  N  50  
G5Q  "O3'"  H21    SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G5Q  InChI             InChI                 1.03   "InChI=1S/C14H20N4O11S/c1-17-8(19)2-3-18(14(17)25)13-11(23)10(22)7(29-13)5-28-30(26,27)16-12(24)6(15)4-9(20)21/h2-3,6-7,10-11,13,22-23H,4-5,15H2,1H3,(H,16,24)(H,20,21)/t6-,7+,10+,11+,13+/m0/s1"  
G5Q  InChIKey          InChI                 1.03   ICPNIEAOMPRPLI-MQZAXFGZSA-N  
G5Q  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)C=CN([C@@H]2O[C@H](CO[S](=O)(=O)NC(=O)[C@@H](N)CC(O)=O)[C@@H](O)[C@H]2O)C1=O"  
G5Q  SMILES            CACTVS                3.385  "CN1C(=O)C=CN([CH]2O[CH](CO[S](=O)(=O)NC(=O)[CH](N)CC(O)=O)[CH](O)[CH]2O)C1=O"  
G5Q  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1C(=O)C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COS(=O)(=O)NC(=O)[C@H](CC(=O)O)N)O)O"  
G5Q  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1C(=O)C=CN(C1=O)C2C(C(C(O2)COS(=O)(=O)NC(=O)C(CC(=O)O)N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          G5Q
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(3~{S})-3-azanyl-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxysulfonylamino]-4-oxidanylidene-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G5Q  "Create component"  2018-08-29  EBI   
G5Q  "Initial release"   2019-12-18  RCSB  
##
