data_DUQ
#

_chem_comp.id                                   DUQ
_chem_comp.name                                 "(2S)-2-[(2,4-dioxopyrimidin-1-yl)methyl]-N-(2-hydroxyethyl)-4-trityloxy-butanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H31 N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-TRITYLATED DEOXYURIDINE ANALOGUE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-02-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       513.584
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DUQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2Y8C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DUQ  O4      O4      O  0  1  N  N  N  16.800  24.598  -0.723  -7.886   0.425   0.652  O4      DUQ   1  
DUQ  C4      C4      C  0  1  N  N  N  17.269  23.560  -0.223  -6.797   0.692   0.177  C4      DUQ   2  
DUQ  N3      N3      N  0  1  N  N  N  18.597  23.375  -0.298  -6.011   1.621   0.757  N3      DUQ   3  
DUQ  C2      C2      C  0  1  N  N  N  19.161  22.255   0.188  -4.808   1.916   0.231  C2      DUQ   4  
DUQ  O2      O2      O  0  1  N  N  N  20.416  22.081   0.126  -4.109   2.756   0.766  O2      DUQ   5  
DUQ  C5      C5      C  0  1  N  N  N  16.419  22.619   0.373  -6.343   0.027  -0.987  C5      DUQ   6  
DUQ  C6      C6      C  0  1  N  N  N  17.006  21.454   0.890  -5.132   0.343  -1.494  C6      DUQ   7  
DUQ  N1      N1      N  0  1  N  N  N  18.345  21.288   0.794  -4.367   1.295  -0.878  N1      DUQ   8  
DUQ  "C1'"   "C1'"   C  0  1  N  N  N  18.989  20.059   1.263  -3.053   1.638  -1.428  "C1'"   DUQ   9  
DUQ  C1      C1      C  0  1  N  N  S  18.998  19.031   0.077  -1.970   0.844  -0.693  C1      DUQ  10  
DUQ  C38     C38     C  0  1  N  N  N  19.180  17.645   0.666  -2.155  -0.627  -0.964  C38     DUQ  11  
DUQ  N34     N34     N  0  1  N  N  N  20.071  16.842   0.083  -1.923  -1.526   0.012  N34     DUQ  12  
DUQ  C39     C39     C  0  1  N  N  N  20.423  15.475   0.469  -1.997  -2.960  -0.280  C39     DUQ  13  
DUQ  C40     C40     C  0  1  N  N  N  21.069  14.940  -0.796  -1.819  -3.754   1.016  C40     DUQ  14  
DUQ  O37     O37     O  0  1  N  N  N  19.975  14.472  -1.595  -2.901  -3.466   1.904  O37     DUQ  15  
DUQ  O38     O38     O  0  1  N  N  N  18.532  17.312   1.647  -2.512  -1.001  -2.061  O38     DUQ  16  
DUQ  "C4'"   "C4'"   C  0  1  N  N  N  17.710  18.972  -0.771  -0.591   1.285  -1.188  "C4'"   DUQ  17  
DUQ  "C5'"   "C5'"   C  0  1  N  N  N  17.526  17.796  -1.785   0.493   0.577  -0.373  "C5'"   DUQ  18  
DUQ  O1      O1      O  0  1  N  N  N  18.674  17.628  -2.656   1.777   1.080  -0.749  O1      DUQ  19  
DUQ  C17     C17     C  0  1  N  N  N  18.661  18.124  -4.023   2.871   0.410  -0.120  C17     DUQ  20  
DUQ  C30     C30     C  0  1  Y  N  N  18.168  19.582  -3.953   2.841   0.682   1.362  C30     DUQ  21  
DUQ  C31     C31     C  0  1  Y  N  N  16.836  19.944  -4.281   2.166   1.785   1.849  C31     DUQ  22  
DUQ  C32     C32     C  0  1  Y  N  N  16.389  21.267  -4.155   2.139   2.035   3.208  C32     DUQ  23  
DUQ  C33     C33     C  0  1  Y  N  N  17.271  22.268  -3.699   2.787   1.181   4.080  C33     DUQ  24  
DUQ  C34     C34     C  0  1  Y  N  N  18.595  21.925  -3.384   3.461   0.076   3.594  C34     DUQ  25  
DUQ  C35     C35     C  0  1  Y  N  N  19.023  20.586  -3.499   3.485  -0.176   2.235  C35     DUQ  26  
DUQ  C24     C24     C  0  1  Y  N  N  20.061  17.948  -4.585   2.757  -1.074  -0.361  C24     DUQ  27  
DUQ  C25     C25     C  0  1  Y  N  N  20.507  18.601  -5.750   1.975  -1.851   0.473  C25     DUQ  28  
DUQ  C26     C26     C  0  1  Y  N  N  21.816  18.400  -6.210   1.871  -3.212   0.252  C26     DUQ  29  
DUQ  C27     C27     C  0  1  Y  N  N  22.704  17.526  -5.545   2.547  -3.795  -0.803  C27     DUQ  30  
DUQ  C28     C28     C  0  1  Y  N  N  22.268  16.852  -4.397   3.328  -3.017  -1.638  C28     DUQ  31  
DUQ  C29     C29     C  0  1  Y  N  N  20.957  17.069  -3.924   3.429  -1.656  -1.419  C29     DUQ  32  
DUQ  C18     C18     C  0  1  Y  N  N  17.810  17.208  -4.864   4.168   0.914  -0.698  C18     DUQ  33  
DUQ  C19     C19     C  0  1  Y  N  N  17.342  17.590  -6.120   4.174   1.573  -1.913  C19     DUQ  34  
DUQ  C20     C20     C  0  1  Y  N  N  16.590  16.700  -6.866   5.364   2.035  -2.443  C20     DUQ  35  
DUQ  C21     C21     C  0  1  Y  N  N  16.263  15.446  -6.369   6.548   1.840  -1.758  C21     DUQ  36  
DUQ  C22     C22     C  0  1  Y  N  N  16.699  15.048  -5.111   6.542   1.182  -0.542  C22     DUQ  37  
DUQ  C23     C23     C  0  1  Y  N  N  17.487  15.924  -4.374   5.352   0.723  -0.010  C23     DUQ  38  
DUQ  H3      H3      H  0  1  N  N  N  19.172  24.077  -0.719  -6.314   2.079   1.557  H3      DUQ  39  
DUQ  H5      H5      H  0  1  N  N  N  15.353  22.784   0.432  -6.957  -0.723  -1.464  H5      DUQ  40  
DUQ  H6      H6      H  0  1  N  N  N  16.395  20.698   1.360  -4.769  -0.154  -2.382  H6      DUQ  41  
DUQ  "H1'1"  "H1'1"  H  0  0  N  N  N  20.020  20.274   1.581  -3.027   1.391  -2.489  "H1'1"  DUQ  42  
DUQ  "H1'2"  "H1'2"  H  0  0  N  N  N  18.440  19.645   2.121  -2.872   2.705  -1.298  "H1'2"  DUQ  43  
DUQ  H1      H1      H  0  1  N  N  N  19.807  19.364  -0.590  -2.048   1.029   0.378  H1      DUQ  44  
DUQ  "H4'1"  "H4'1"  H  0  0  N  N  N  16.873  18.905  -0.061  -0.482   1.024  -2.241  "H4'1"  DUQ  45  
DUQ  "H4'2"  "H4'2"  H  0  0  N  N  N  17.761  19.870  -1.404  -0.490   2.363  -1.068  "H4'2"  DUQ  46  
DUQ  H34     H34     H  0  1  N  N  N  20.554  17.217  -0.708  -1.708  -1.224   0.909  H34     DUQ  47  
DUQ  H391    H391    H  0  0  N  N  N  21.114  15.454   1.324  -2.968  -3.192  -0.718  H391    DUQ  48  
DUQ  H392    H392    H  0  0  N  N  N  19.562  14.880   0.807  -1.208  -3.229  -0.982  H392    DUQ  49  
DUQ  H401    H401    H  0  0  N  N  N  21.630  15.729  -1.318  -1.808  -4.820   0.790  H401    DUQ  50  
DUQ  H402    H402    H  0  0  N  N  N  21.797  14.143  -0.583  -0.877  -3.473   1.488  H402    DUQ  51  
DUQ  H37     H37     H  0  1  N  N  N  19.205  14.368  -1.049  -2.853  -3.936   2.747  H37     DUQ  52  
DUQ  "H5'1"  "H5'1"  H  0  0  N  N  N  17.381  16.865  -1.217   0.328   0.761   0.688  "H5'1"  DUQ  53  
DUQ  "H5'2"  "H5'2"  H  0  0  N  N  N  16.657  18.031  -2.417   0.452  -0.495  -0.567  "H5'2"  DUQ  54  
DUQ  H31     H31     H  0  1  N  N  N  16.153  19.186  -4.635   1.660   2.453   1.167  H31     DUQ  55  
DUQ  H35     H35     H  0  1  N  N  N  20.037  20.332  -3.229   4.009  -1.040   1.855  H35     DUQ  56  
DUQ  H32     H32     H  0  1  N  N  N  15.370  21.519  -4.407   1.612   2.897   3.588  H32     DUQ  57  
DUQ  H33     H33     H  0  1  N  N  N  16.931  23.288  -3.593   2.766   1.376   5.142  H33     DUQ  58  
DUQ  HA      HA      H  0  1  N  N  N  19.286  22.686  -3.054   3.968  -0.591   4.275  HA      DUQ  59  
DUQ  H25     H25     H  0  1  N  N  N  19.840  19.257  -6.290   1.447  -1.396   1.298  H25     DUQ  60  
DUQ  H29     H29     H  0  1  N  N  N  20.627  16.552  -3.035   4.036  -1.048  -2.074  H29     DUQ  61  
DUQ  H26     H26     H  0  1  N  N  N  22.153  18.925  -7.092   1.261  -3.820   0.904  H26     DUQ  62  
DUQ  H27     H27     H  0  1  N  N  N  23.707  17.379  -5.917   2.466  -4.858  -0.975  H27     DUQ  63  
DUQ  H28     H28     H  0  1  N  N  N  22.929  16.173  -3.879   3.857  -3.473  -2.462  H28     DUQ  64  
DUQ  H19     H19     H  0  1  N  N  N  17.565  18.573  -6.508   3.248   1.725  -2.449  H19     DUQ  65  
DUQ  H23     H23     H  0  1  N  N  N  17.859  15.617  -3.408   5.347   0.212   0.942  H23     DUQ  66  
DUQ  H20     H20     H  0  1  N  N  N  16.252  16.986  -7.851   5.368   2.549  -3.393  H20     DUQ  67  
DUQ  H21     H21     H  0  1  N  N  N  15.664  14.773  -6.965   7.477   2.201  -2.172  H21     DUQ  68  
DUQ  H22     H22     H  0  1  N  N  N  16.431  14.080  -4.715   7.467   1.029  -0.006  H22     DUQ  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DUQ  O4     C4      DOUB  N  N   1  
DUQ  C4     N3      SING  N  N   2  
DUQ  C4     C5      SING  N  N   3  
DUQ  N3     C2      SING  N  N   4  
DUQ  C2     O2      DOUB  N  N   5  
DUQ  C2     N1      SING  N  N   6  
DUQ  C5     C6      DOUB  N  N   7  
DUQ  C6     N1      SING  N  N   8  
DUQ  N1     "C1'"   SING  N  N   9  
DUQ  "C1'"  C1      SING  N  N  10  
DUQ  C1     C38     SING  N  N  11  
DUQ  C1     "C4'"   SING  N  N  12  
DUQ  C38    N34     SING  N  N  13  
DUQ  C38    O38     DOUB  N  N  14  
DUQ  N34    C39     SING  N  N  15  
DUQ  C39    C40     SING  N  N  16  
DUQ  C40    O37     SING  N  N  17  
DUQ  "C4'"  "C5'"   SING  N  N  18  
DUQ  "C5'"  O1      SING  N  N  19  
DUQ  O1     C17     SING  N  N  20  
DUQ  C17    C30     SING  N  N  21  
DUQ  C17    C24     SING  N  N  22  
DUQ  C17    C18     SING  N  N  23  
DUQ  C30    C31     SING  Y  N  24  
DUQ  C30    C35     DOUB  Y  N  25  
DUQ  C31    C32     DOUB  Y  N  26  
DUQ  C32    C33     SING  Y  N  27  
DUQ  C33    C34     DOUB  Y  N  28  
DUQ  C34    C35     SING  Y  N  29  
DUQ  C24    C25     SING  Y  N  30  
DUQ  C24    C29     DOUB  Y  N  31  
DUQ  C25    C26     DOUB  Y  N  32  
DUQ  C26    C27     SING  Y  N  33  
DUQ  C27    C28     DOUB  Y  N  34  
DUQ  C28    C29     SING  Y  N  35  
DUQ  C18    C19     SING  Y  N  36  
DUQ  C18    C23     DOUB  Y  N  37  
DUQ  C19    C20     DOUB  Y  N  38  
DUQ  C20    C21     SING  Y  N  39  
DUQ  C21    C22     DOUB  Y  N  40  
DUQ  C22    C23     SING  Y  N  41  
DUQ  N3     H3      SING  N  N  42  
DUQ  C5     H5      SING  N  N  43  
DUQ  C6     H6      SING  N  N  44  
DUQ  "C1'"  "H1'1"  SING  N  N  45  
DUQ  "C1'"  "H1'2"  SING  N  N  46  
DUQ  C1     H1      SING  N  N  47  
DUQ  "C4'"  "H4'1"  SING  N  N  48  
DUQ  "C4'"  "H4'2"  SING  N  N  49  
DUQ  N34    H34     SING  N  N  50  
DUQ  C39    H391    SING  N  N  51  
DUQ  C39    H392    SING  N  N  52  
DUQ  C40    H401    SING  N  N  53  
DUQ  C40    H402    SING  N  N  54  
DUQ  O37    H37     SING  N  N  55  
DUQ  "C5'"  "H5'1"  SING  N  N  56  
DUQ  "C5'"  "H5'2"  SING  N  N  57  
DUQ  C31    H31     SING  N  N  58  
DUQ  C35    H35     SING  N  N  59  
DUQ  C32    H32     SING  N  N  60  
DUQ  C33    H33     SING  N  N  61  
DUQ  C34    HA      SING  N  N  62  
DUQ  C25    H25     SING  N  N  63  
DUQ  C29    H29     SING  N  N  64  
DUQ  C26    H26     SING  N  N  65  
DUQ  C27    H27     SING  N  N  66  
DUQ  C28    H28     SING  N  N  67  
DUQ  C19    H19     SING  N  N  68  
DUQ  C23    H23     SING  N  N  69  
DUQ  C20    H20     SING  N  N  70  
DUQ  C21    H21     SING  N  N  71  
DUQ  C22    H22     SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DUQ  SMILES_CANONICAL  CACTVS                3.352  "OCCNC(=O)[C@@H](CCOC(c1ccccc1)(c2ccccc2)c3ccccc3)CN4C=CC(=O)NC4=O"  
DUQ  SMILES            CACTVS                3.352  "OCCNC(=O)[CH](CCOC(c1ccccc1)(c2ccccc2)c3ccccc3)CN4C=CC(=O)NC4=O"  
DUQ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OCC[C@@H](CN4C=CC(=O)NC4=O)C(=O)NCCO"  
DUQ  SMILES            "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OCCC(CN4C=CC(=O)NC4=O)C(=O)NCCO"  
DUQ  InChI             InChI                 1.03   "InChI=1S/C30H31N3O5/c34-20-18-31-28(36)23(22-33-19-16-27(35)32-29(33)37)17-21-38-30(24-10-4-1-5-11-24,25-12-6-2-7-13-25)26-14-8-3-9-15-26/h1-16,19,23,34H,17-18,20-22H2,(H,31,36)(H,32,35,37)/t23-/m0/s1"  
DUQ  InChIKey          InChI                 1.03   POOIRAMVDDLAIT-QHCPKHFHSA-N  
#
_pdbx_chem_comp_identifier.comp_id          DUQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "(2S)-2-[(2,4-dioxopyrimidin-1-yl)methyl]-N-(2-hydroxyethyl)-4-trityloxy-butanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DUQ  "Create component"      2011-02-04  EBI   
DUQ  "Modify aromatic_flag"  2011-06-04  RCSB  
DUQ  "Modify descriptor"     2011-06-04  RCSB  
DUQ  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DUQ
_pdbx_chem_comp_synonyms.name        "5'-TRITYLATED DEOXYURIDINE ANALOGUE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
