data_BMQ
# 
_chem_comp.id                                    BMQ 
_chem_comp.name                                  
;1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H13 N2 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-03-02 
_chem_comp.pdbx_modified_date                    2011-06-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.181 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BMQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1EIX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BMQ P      P      P 0 1 N N N 31.932 47.663 71.858 4.224  -1.000 -0.126 P      BMQ 1  
BMQ O1P    O1P    O 0 1 N N N 31.912 48.088 73.325 3.928  -1.831 1.062  O1P    BMQ 2  
BMQ O2P    O2P    O 0 1 N N N 31.165 48.535 70.929 5.442  -0.002 0.207  O2P    BMQ 3  
BMQ O3P    O3P    O 0 1 N N N 31.425 46.269 71.746 4.632  -1.952 -1.359 O3P    BMQ 4  
BMQ "O5'"  "O5'"  O 0 1 N N N 33.469 47.668 71.476 2.920  -0.142 -0.520 "O5'"  BMQ 5  
BMQ "C5'"  "C5'"  C 0 1 N N N 33.793 47.341 70.125 2.249  0.721  0.401  "C5'"  BMQ 6  
BMQ "C4'"  "C4'"  C 0 1 N N R 35.216 47.262 69.801 1.056  1.380  -0.295 "C4'"  BMQ 7  
BMQ "O4'"  "O4'"  O 0 1 N N N 35.835 48.630 69.445 0.069  0.386  -0.619 "O4'"  BMQ 8  
BMQ "C3'"  "C3'"  C 0 1 N N S 36.187 46.528 70.678 0.390  2.393  0.656  "C3'"  BMQ 9  
BMQ "O3'"  "O3'"  O 0 1 N N N 36.879 45.530 69.858 0.422  3.705  0.091  "O3'"  BMQ 10 
BMQ "C2'"  "C2'"  C 0 1 N N R 37.218 47.595 71.126 -1.070 1.893  0.782  "C2'"  BMQ 11 
BMQ "O2'"  "O2'"  O 0 1 N N N 38.483 47.163 71.394 -1.988 2.988  0.759  "O2'"  BMQ 12 
BMQ "C1'"  "C1'"  C 0 1 N N R 37.178 48.615 70.001 -1.223 1.016  -0.488 "C1'"  BMQ 13 
BMQ N1     N1     N 0 1 N N N 37.650 50.039 70.403 -2.270 0.010  -0.296 N1     BMQ 14 
BMQ C2     C2     C 0 1 N N N 37.019 50.695 71.485 -2.136 -0.888 0.687  C2     BMQ 15 
BMQ O2     O2     O 0 1 N N N 36.031 50.152 72.178 -1.140 -0.821 1.378  O2     BMQ 16 
BMQ N3     N3     N 0 1 N N N 37.470 51.959 71.818 -3.019 -1.854 0.964  N3     BMQ 17 
BMQ C4     C4     C 0 1 N N N 38.492 52.563 71.133 -4.156 -2.008 0.252  C4     BMQ 18 
BMQ O4     O4     O 0 1 N N N 38.855 53.694 71.481 -4.948 -2.888 0.516  O4     BMQ 19 
BMQ C5     C5     C 0 1 N N N 39.100 51.864 70.041 -4.407 -1.040 -0.888 C5     BMQ 20 
BMQ C6     C6     C 0 1 N N N 38.610 50.606 69.752 -3.345 0.020  -1.113 C6     BMQ 21 
BMQ O1     O1     O 0 1 N N N 39.190 49.941 68.711 -3.455 0.842  -1.997 O1     BMQ 22 
BMQ HOP2   HOP2   H 0 0 N N N 30.768 49.247 71.417 5.691  0.574  -0.528 HOP2   BMQ 23 
BMQ HOP3   HOP3   H 0 0 N N N 31.198 45.944 72.609 5.412  -2.499 -1.192 HOP3   BMQ 24 
BMQ "H5'1" "H5'1" H 0 0 N N N 33.355 46.354 69.914 1.897  0.140  1.253  "H5'1" BMQ 25 
BMQ "H5'2" "H5'2" H 0 0 N N N 33.356 48.123 69.486 2.939  1.491  0.746  "H5'2" BMQ 26 
BMQ "H4'"  "H4'"  H 0 1 N N N 35.104 46.587 68.940 1.388  1.883  -1.203 "H4'"  BMQ 27 
BMQ "H3'"  "H3'"  H 0 1 N N N 35.698 46.033 71.530 0.883  2.386  1.628  "H3'"  BMQ 28 
BMQ "HO3'" "HO3'" H 0 0 N N N 37.500 45.053 70.396 0.015  4.384  0.647  "HO3'" BMQ 29 
BMQ "H2'"  "H2'"  H 0 1 N N N 36.938 47.991 72.113 -1.201 1.297  1.685  "H2'"  BMQ 30 
BMQ "HO2'" "HO2'" H 0 0 N N N 39.021 47.901 71.657 -1.871 3.614  1.486  "HO2'" BMQ 31 
BMQ "H1'"  "H1'"  H 0 1 N N N 37.909 48.300 69.242 -1.439 1.635  -1.358 "H1'"  BMQ 32 
BMQ HN3    HN3    H 0 1 N N N 37.039 52.445 72.578 -2.837 -2.461 1.698  HN3    BMQ 33 
BMQ H51    H51    H 0 1 N N N 38.954 52.481 69.142 -4.514 -1.618 -1.806 H51    BMQ 34 
BMQ H52    H52    H 0 1 N N N 40.166 51.746 70.287 -5.353 -0.533 -0.701 H52    BMQ 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BMQ P     O1P    DOUB N N 1  
BMQ P     O2P    SING N N 2  
BMQ P     O3P    SING N N 3  
BMQ P     "O5'"  SING N N 4  
BMQ O2P   HOP2   SING N N 5  
BMQ O3P   HOP3   SING N N 6  
BMQ "O5'" "C5'"  SING N N 7  
BMQ "C5'" "C4'"  SING N N 8  
BMQ "C5'" "H5'1" SING N N 9  
BMQ "C5'" "H5'2" SING N N 10 
BMQ "C4'" "O4'"  SING N N 11 
BMQ "C4'" "C3'"  SING N N 12 
BMQ "C4'" "H4'"  SING N N 13 
BMQ "O4'" "C1'"  SING N N 14 
BMQ "C3'" "O3'"  SING N N 15 
BMQ "C3'" "C2'"  SING N N 16 
BMQ "C3'" "H3'"  SING N N 17 
BMQ "O3'" "HO3'" SING N N 18 
BMQ "C2'" "O2'"  SING N N 19 
BMQ "C2'" "C1'"  SING N N 20 
BMQ "C2'" "H2'"  SING N N 21 
BMQ "O2'" "HO2'" SING N N 22 
BMQ "C1'" N1     SING N N 23 
BMQ "C1'" "H1'"  SING N N 24 
BMQ N1    C2     SING N N 25 
BMQ N1    C6     SING N N 26 
BMQ C2    O2     DOUB N N 27 
BMQ C2    N3     SING N N 28 
BMQ N3    C4     SING N N 29 
BMQ N3    HN3    SING N N 30 
BMQ C4    O4     DOUB N N 31 
BMQ C4    C5     SING N N 32 
BMQ C5    C6     SING N N 33 
BMQ C5    H51    SING N N 34 
BMQ C5    H52    SING N N 35 
BMQ C6    O1     DOUB N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BMQ SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)CC1=O)C(O)C2O"                                                                                                          
BMQ InChI            InChI                1.03  "InChI=1S/C9H13N2O10P/c12-4-1-5(13)11(9(16)10-4)8-7(15)6(14)3(21-8)2-20-22(17,18)19/h3,6-8,14-15H,1-2H2,(H,10,12,16)(H2,17,18,19)/t3-,6-,7-,8-/m1/s1" 
BMQ InChIKey         InChI                1.03  AODYJUNLDJOADV-YXZULKJRSA-N                                                                                                                           
BMQ SMILES_CANONICAL CACTVS               3.370 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)CC(=O)NC2=O"                                                                                     
BMQ SMILES           CACTVS               3.370 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)CC(=O)NC2=O"                                                                                            
BMQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1C(=O)NC(=O)N(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                    
BMQ SMILES           "OpenEye OEToolkits" 1.7.2 "C1C(=O)NC(=O)N(C1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BMQ "SYSTEMATIC NAME" ACDLabs              12.01 
;6-oxouridine 5'-(dihydrogen phosphate)
;
BMQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,4R,5R)-3,4-bis(oxidanyl)-5-[2,4,6-tris(oxidanylidene)-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BMQ "Create component"    2000-03-02 RCSB 
BMQ "Modify descriptor"   2011-06-04 RCSB 
BMQ "Modify linking type" 2011-06-24 RCSB 
# 
