data_A1APQ
# 
_chem_comp.id                                    A1APQ 
_chem_comp.name                                  "(4S,5R,7R,11aP)-10-{[(3R)-3-hydroxy-1-methyl-2-oxopyrrolidin-3-yl]ethynyl}-N~3~-methyl-6,7-dihydro-5H-5,7-methanoimidazo[2,1-a][2]benzazepine-2,3-dicarboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.460 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1APQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BJ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1APQ C5   C1  C 0 1 Y N N N N N -22.284 36.163 -22.890 -3.964 -0.419 0.137  C5   A1APQ 1  
A1APQ C6   C2  C 0 1 Y N N N N N -23.271 36.571 -21.979 -3.170 -1.547 0.292  C6   A1APQ 2  
A1APQ C3   C3  C 0 1 N N N N N N -22.144 36.519 -24.395 -5.413 -0.387 -0.121 C3   A1APQ 3  
A1APQ C1   C4  C 0 1 N N N N N N -22.884 37.699 -26.504 -7.308 -0.052 -1.617 C1   A1APQ 4  
A1APQ C10  C5  C 0 1 N N N N N N -20.173 34.600 -22.659 -3.583 2.039  0.451  C10  A1APQ 5  
A1APQ C11  C6  C 0 1 N N N N N N -19.805 33.402 -22.233 -2.982 2.969  -0.627 C11  A1APQ 6  
A1APQ C12  C7  C 0 1 N N N N N N -19.379 33.554 -21.024 -1.807 3.237  0.330  C12  A1APQ 7  
A1APQ C13  C8  C 0 1 N N N N N N -19.134 34.859 -21.648 -2.748 2.835  1.452  C13  A1APQ 8  
A1APQ C14  C9  C 0 1 Y N N N N N -20.265 33.834 -19.854 -0.631 2.341  0.116  C14  A1APQ 9  
A1APQ C15  C10 C 0 1 Y N N N N N -21.364 34.585 -19.889 -0.629 0.970  0.282  C15  A1APQ 10 
A1APQ C16  C11 C 0 1 Y N N N N N -22.136 34.778 -18.728 0.564  0.243  0.223  C16  A1APQ 11 
A1APQ C17  C12 C 0 1 Y N N N N N -21.738 34.136 -17.559 1.751  0.885  -0.113 C17  A1APQ 12 
A1APQ C18  C13 C 0 1 Y N N N N N -20.619 33.343 -17.532 1.730  2.255  -0.382 C18  A1APQ 13 
A1APQ C19  C14 C 0 1 Y N N N N N -19.865 33.179 -18.679 0.560  2.966  -0.261 C19  A1APQ 14 
A1APQ C20  C15 C 0 1 N N N N N N -22.547 34.290 -16.269 2.979  0.150  -0.183 C20  A1APQ 15 
A1APQ C21  C16 C 0 1 N N N N N N -23.177 34.432 -15.269 3.985  -0.452 -0.239 C21  A1APQ 16 
A1APQ C22  C17 C 0 1 N N R N N N -23.953 34.750 -13.985 5.247  -1.206 -0.310 C22  A1APQ 17 
A1APQ C23  C18 C 0 1 N N N N N N -25.478 33.970 -14.005 5.638  -1.739 1.087  C23  A1APQ 18 
A1APQ C24  C19 C 0 1 N N N N N N -26.384 34.844 -14.288 6.576  -0.622 1.598  C24  A1APQ 19 
A1APQ C26  C20 C 0 1 N N N N N N -24.143 36.038 -13.964 6.390  -0.292 -0.693 C26  A1APQ 20 
A1APQ C28  C21 C 0 1 N N N N N N -26.400 37.573 -14.204 8.307  0.873  0.376  C28  A1APQ 21 
A1APQ C30  C22 C 0 1 N N N N N N -24.484 37.482 -22.236 -3.634 -2.952 0.293  C30  A1APQ 22 
A1APQ C8   C23 C 0 1 Y N N N N N -21.875 35.264 -20.954 -1.864 0.183  0.338  C8   A1APQ 23 
A1APQ N2   N1  N 0 1 N N N N N N -23.061 37.403 -25.066 -5.870 -0.199 -1.375 N2   A1APQ 24 
A1APQ N25  N2  N 0 1 N N N N N N -25.715 36.282 -14.163 7.120  0.014  0.393  N25  A1APQ 25 
A1APQ N32  N3  N 0 1 N N N N N N -25.406 37.766 -21.137 -2.748 -3.954 0.455  N32  A1APQ 26 
A1APQ N7   N4  N 0 1 Y N N N N N -22.969 36.003 -20.806 -1.906 -1.131 0.440  N7   A1APQ 27 
A1APQ N9   N5  N 0 1 Y N N N N N -21.445 35.374 -22.223 -3.124 0.664  0.279  N9   A1APQ 28 
A1APQ O27  O1  O 0 1 N N N N N N -23.316 36.880 -13.841 6.615  0.105  -1.816 O27  A1APQ 29 
A1APQ O29  O2  O 0 1 N N N N N N -23.209 34.364 -12.835 5.132  -2.282 -1.244 O29  A1APQ 30 
A1APQ O31  O3  O 0 1 N N N N N N -24.689 37.945 -23.313 -4.814 -3.202 0.148  O31  A1APQ 31 
A1APQ O4   O4  O 0 1 N N N N N N -21.270 36.058 -25.046 -6.198 -0.531 0.797  O4   A1APQ 32 
A1APQ H12  H1  H 0 1 N N N N N N -23.674 38.388 -26.837 -7.484 0.091  -2.683 H12  A1APQ 33 
A1APQ H11  H2  H 0 1 N N N N N N -21.900 38.165 -26.664 -7.826 -0.950 -1.280 H11  A1APQ 34 
A1APQ H13  H3  H 0 1 N N N N N N -22.945 36.764 -27.081 -7.682 0.811  -1.067 H13  A1APQ 35 
A1APQ H101 H4  H 0 0 N N N N N N -19.860 34.866 -23.680 -4.661 2.125  0.590  H101 A1APQ 36 
A1APQ H112 H5  H 0 0 N N N N N N -20.663 32.714 -22.249 -2.688 2.445  -1.536 H112 A1APQ 37 
A1APQ H111 H6  H 0 0 N N N N N N -19.002 33.003 -22.871 -3.589 3.852  -0.826 H111 A1APQ 38 
A1APQ H121 H7  H 0 0 N N N N N N -18.458 33.019 -20.749 -1.525 4.289  0.370  H121 A1APQ 39 
A1APQ H131 H8  H 0 0 N N N N N N -19.354 35.714 -20.992 -3.286 3.678  1.885  H131 A1APQ 40 
A1APQ H132 H9  H 0 0 N N N N N N -18.123 34.969 -22.067 -2.273 2.209  2.208  H132 A1APQ 41 
A1APQ H161 H10 H 0 0 N N N N N N -23.014 35.407 -18.744 0.563  -0.815 0.439  H161 A1APQ 42 
A1APQ H181 H11 H 0 0 N N N N N N -20.328 32.848 -16.617 2.636  2.758  -0.685 H181 A1APQ 43 
A1APQ H191 H12 H 0 0 N N N N N N -18.982 32.557 -18.671 0.561  4.028  -0.462 H191 A1APQ 44 
A1APQ H232 H13 H 0 0 N N N N N N -25.683 33.531 -13.017 4.762  -1.835 1.728  H232 A1APQ 45 
A1APQ H231 H14 H 0 0 N N N N N N -25.478 33.176 -14.767 6.168  -2.688 1.009  H231 A1APQ 46 
A1APQ H241 H15 H 0 0 N N N N N N -26.750 34.688 -15.314 6.013  0.103  2.186  H241 A1APQ 47 
A1APQ H242 H16 H 0 0 N N N N N N -27.223 34.757 -13.582 7.380  -1.049 2.197  H242 A1APQ 48 
A1APQ H283 H17 H 0 0 N N N N N N -25.664 38.383 -14.091 8.494  1.214  -0.643 H283 A1APQ 49 
A1APQ H282 H18 H 0 0 N N N N N N -26.920 37.682 -15.167 8.141  1.735  1.022  H282 A1APQ 50 
A1APQ H281 H19 H 0 0 N N N N N N -27.132 37.626 -13.385 9.168  0.310  0.735  H281 A1APQ 51 
A1APQ H21  H20 H 0 1 N N N N N N -23.818 37.817 -24.560 -5.247 -0.159 -2.118 H21  A1APQ 52 
A1APQ H322 H21 H 0 0 N N N N N N -26.205 38.347 -21.292 -1.806 -3.755 0.571  H322 A1APQ 53 
A1APQ H321 H22 H 0 0 N N N N N N -25.238 37.379 -20.230 -3.052 -4.875 0.456  H321 A1APQ 54 
A1APQ H291 H23 H 0 0 N N N N N N -22.760 35.122 -12.479 4.917  -2.001 -2.144 H291 A1APQ 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1APQ N2  C1   SING N N 1  
A1APQ C3  N2   SING N N 2  
A1APQ O4  C3   DOUB N N 3  
A1APQ C5  C3   SING N N 4  
A1APQ C6  C5   DOUB Y N 5  
A1APQ C8  N7   DOUB Y N 6  
A1APQ N9  C8   SING Y N 7  
A1APQ C10 N9   SING N N 8  
A1APQ C11 C10  SING N N 9  
A1APQ C12 C11  SING N N 10 
A1APQ C13 C12  SING N N 11 
A1APQ C14 C12  SING N N 12 
A1APQ C15 C14  DOUB Y N 13 
A1APQ C16 C15  SING Y N 14 
A1APQ C17 C16  DOUB Y N 15 
A1APQ C19 C18  DOUB Y N 16 
A1APQ C18 C17  SING Y N 17 
A1APQ C20 C17  SING N N 18 
A1APQ C21 C20  TRIP N N 19 
A1APQ C22 C21  SING N N 20 
A1APQ C24 C23  SING N N 21 
A1APQ N25 C24  SING N N 22 
A1APQ O27 C26  DOUB N N 23 
A1APQ C26 N25  SING N N 24 
A1APQ C28 N25  SING N N 25 
A1APQ C23 C22  SING N N 26 
A1APQ O29 C22  SING N N 27 
A1APQ N7  C6   SING Y N 28 
A1APQ C30 C6   SING N N 29 
A1APQ O31 C30  DOUB N N 30 
A1APQ N32 C30  SING N N 31 
A1APQ C5  N9   SING Y N 32 
A1APQ C8  C15  SING N N 33 
A1APQ C10 C13  SING N N 34 
A1APQ C14 C19  SING Y N 35 
A1APQ C22 C26  SING N N 36 
A1APQ C1  H12  SING N N 37 
A1APQ C1  H11  SING N N 38 
A1APQ C1  H13  SING N N 39 
A1APQ C10 H101 SING N N 40 
A1APQ C11 H112 SING N N 41 
A1APQ C11 H111 SING N N 42 
A1APQ C12 H121 SING N N 43 
A1APQ C13 H131 SING N N 44 
A1APQ C13 H132 SING N N 45 
A1APQ C16 H161 SING N N 46 
A1APQ C18 H181 SING N N 47 
A1APQ C19 H191 SING N N 48 
A1APQ C23 H232 SING N N 49 
A1APQ C23 H231 SING N N 50 
A1APQ C24 H241 SING N N 51 
A1APQ C24 H242 SING N N 52 
A1APQ C28 H283 SING N N 53 
A1APQ C28 H282 SING N N 54 
A1APQ C28 H281 SING N N 55 
A1APQ N2  H21  SING N N 56 
A1APQ N32 H322 SING N N 57 
A1APQ N32 H321 SING N N 58 
A1APQ O29 H291 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1APQ SMILES           ACDLabs              12.01 "OC1(C#Cc2ccc3C4CC(C4)n4c(C(=O)NC)c(nc4c3c2)C(N)=O)CCN(C)C1=O"                                                                                                                                         
A1APQ InChI            InChI                1.06  "InChI=1S/C23H23N5O4/c1-25-21(30)18-17(19(24)29)26-20-16-9-12(5-6-23(32)7-8-27(2)22(23)31)3-4-15(16)13-10-14(11-13)28(18)20/h3-4,9,13-14,32H,7-8,10-11H2,1-2H3,(H2,24,29)(H,25,30)/t13-,14+,23-/m0/s1" 
A1APQ InChIKey         InChI                1.06  CAWYRWKRCFJCIM-UDFDBXRZSA-N                                                                                                                                                                            
A1APQ SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1n2C3CC(C3)c4ccc(cc4c2nc1C(N)=O)C#C[C@]5(O)CCN(C)C5=O"                                                                                                                                        
A1APQ SMILES           CACTVS               3.385 "CNC(=O)c1n2C3CC(C3)c4ccc(cc4c2nc1C(N)=O)C#C[C]5(O)CCN(C)C5=O"                                                                                                                                         
A1APQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1c(nc-2n1C3CC(C3)c4c2cc(cc4)C#C[C@@]5(CCN(C5=O)C)O)C(=O)N"                                                                                                                                    
A1APQ SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1c(nc-2n1C3CC(C3)c4c2cc(cc4)C#CC5(CCN(C5=O)C)O)C(=O)N"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1APQ "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,5R,7R,11aP)-10-{[(3R)-3-hydroxy-1-methyl-2-oxopyrrolidin-3-yl]ethynyl}-N~3~-methyl-6,7-dihydro-5H-5,7-methanoimidazo[2,1-a][2]benzazepine-2,3-dicarboxamide"         
A1APQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}3-methyl-10-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrolidin-3-yl]ethynyl]-5,6,7,12-tetrahydro-5,7-methanobenzo[c]imidazo[1,2-a]azepine-2,3-dicarboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1APQ "Create component" 2024-04-25 RCSB 
A1APQ "Initial release"  2024-10-02 RCSB 
# 
