data_8YQ
# 
_chem_comp.id                                    8YQ 
_chem_comp.name                                  "(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H35 Cl N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-27 
_chem_comp.pdbx_modified_date                    2017-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        643.125 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8YQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NIX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8YQ C14 C1  C  0 1 Y N N -3.366  61.513 -19.048 5.368  -1.271 -0.270 C14 8YQ 1  
8YQ C13 C2  C  0 1 N N N -5.169  60.416 -20.396 3.779  0.667  -0.075 C13 8YQ 2  
8YQ C15 C3  C  0 1 Y N N -2.367  61.425 -20.210 6.486  -0.303 -0.386 C15 8YQ 3  
8YQ C17 C4  C  0 1 Y N N -0.450  60.502 -21.154 8.658  0.456  0.303  C17 8YQ 4  
8YQ C16 C5  C  0 1 Y N N -1.340  60.559 -20.085 7.620  -0.447 0.415  C16 8YQ 5  
8YQ C8  C6  C  0 1 Y N N -9.823  60.340 -17.648 -1.038 -0.753 0.432  C8  8YQ 6  
8YQ C10 C7  C  0 1 N N N -7.000  60.751 -17.987 1.607  -1.224 0.139  C10 8YQ 7  
8YQ C9  C8  C  0 1 Y N N -9.135  61.442 -17.070 -0.604 -2.068 0.370  C9  8YQ 8  
8YQ N1  N1  N  0 1 N N N -13.672 63.172 -17.700 -5.345 -2.217 -1.339 N1  8YQ 9  
8YQ C12 C9  C  0 1 Y N N -4.681  61.054 -19.116 4.060  -0.813 -0.122 C12 8YQ 10 
8YQ C11 C10 C  0 1 Y N N -5.542  61.205 -18.021 3.022  -1.718 -0.020 C11 8YQ 11 
8YQ O3  O1  O  0 1 N N N 0.592   59.657 -21.017 9.772  0.333  1.074  O3  8YQ 12 
8YQ C1  C11 C  0 1 Y N N -13.642 55.521 -20.644 -3.513 5.059  -0.437 C1  8YQ 13 
8YQ C2  C12 C  0 1 Y N N -14.439 55.123 -19.547 -3.684 5.667  0.794  C2  8YQ 14 
8YQ C3  C13 C  0 1 Y N N -14.210 55.650 -18.259 -3.253 5.033  1.943  C3  8YQ 15 
8YQ C4  C14 C  0 1 Y N N -13.190 56.571 -18.034 -2.649 3.791  1.864  C4  8YQ 16 
8YQ C5  C15 C  0 1 Y N N -12.387 56.982 -19.107 -2.478 3.184  0.634  C5  8YQ 17 
8YQ C6  C16 C  0 1 N N N -11.296 58.003 -18.845 -1.821 1.831  0.547  C6  8YQ 18 
8YQ C7  C17 C  0 1 Y N N -11.226 60.191 -17.571 -2.388 -0.478 0.583  C7  8YQ 19 
8YQ O5  O2  O  0 1 N N N -15.896 59.357 -18.929 -7.032 1.231  1.270  O5  8YQ 20 
8YQ N   N2  N  0 1 N N N -12.866 54.406 -22.885 -5.367 5.369  -1.977 N   8YQ 21 
8YQ C   C18 C  0 1 N N N -13.977 54.914 -22.076 -3.978 5.753  -1.691 C   8YQ 22 
8YQ O   O3  O  0 1 N N N -11.935 59.046 -18.178 -2.817 0.811  0.644  O   8YQ 23 
8YQ CL  CL1 CL 0 0 N N N -9.039  63.818 -15.657 -0.979 -4.753 0.379  CL  8YQ 24 
8YQ O1  O4  O  0 1 N N N -7.702  61.648 -17.109 0.720  -2.341 0.223  O1  8YQ 25 
8YQ O2  O5  O  0 1 N N N 0.323   61.110 -23.316 9.605  2.389  -0.707 O2  8YQ 26 
8YQ O4  O6  O  0 1 N N N -14.930 64.455 -19.189 -7.066 -2.098 -2.989 O4  8YQ 27 
8YQ O6  O7  O  0 1 N N N -14.123 59.537 -20.103 -7.483 -0.842 1.887  O6  8YQ 28 
8YQ C18 C19 C  0 1 Y N N -0.600  61.265 -22.320 8.573  1.508  -0.609 C18 8YQ 29 
8YQ C19 C20 C  0 1 N N N 1.403   60.264 -23.167 10.792 2.043  -0.139 C19 8YQ 30 
8YQ C20 C21 C  0 1 N N N 1.523   59.505 -22.017 10.872 1.050  0.721  C20 8YQ 31 
8YQ C21 C22 C  0 1 Y N N -1.650  62.138 -22.466 7.453  1.643  -1.412 C21 8YQ 32 
8YQ C22 C23 C  0 1 Y N N -2.556  62.188 -21.399 6.409  0.745  -1.299 C22 8YQ 33 
8YQ C23 C24 C  0 1 Y N N -2.902  62.068 -17.859 5.620  -2.641 -0.313 C23 8YQ 34 
8YQ C24 C25 C  0 1 Y N N -3.796  62.198 -16.797 4.576  -3.536 -0.205 C24 8YQ 35 
8YQ C25 C26 C  0 1 Y N N -5.098  61.774 -16.852 3.279  -3.076 -0.064 C25 8YQ 36 
8YQ C26 C27 C  0 1 Y N N -9.896  62.391 -16.413 -1.521 -3.106 0.458  C26 8YQ 37 
8YQ C27 C28 C  0 1 Y N N -11.300 62.246 -16.325 -2.868 -2.829 0.608  C27 8YQ 38 
8YQ C28 C29 C  0 1 Y N N -11.979 61.159 -16.916 -3.302 -1.518 0.671  C28 8YQ 39 
8YQ C29 C30 C  0 1 N N N -13.528 61.026 -16.777 -4.770 -1.219 0.834  C29 8YQ 40 
8YQ C30 C31 C  0 1 N N R -14.379 62.054 -17.536 -5.398 -0.978 -0.540 C30 8YQ 41 
8YQ C31 C32 C  0 1 N N R -13.919 63.640 -19.172 -6.726 -2.605 -1.697 C31 8YQ 42 
8YQ C32 C33 C  0 1 N N N -14.209 62.289 -19.916 -7.615 -1.950 -0.610 C32 8YQ 43 
8YQ C33 C34 C  0 1 N N R -14.961 61.615 -19.057 -6.885 -0.601 -0.379 C33 8YQ 44 
8YQ C34 C35 C  0 1 N N N -14.976 60.077 -19.386 -7.156 -0.080 1.009  C34 8YQ 45 
8YQ C35 C36 C  0 1 Y N N -12.617 56.463 -20.405 -2.910 3.818  -0.516 C35 8YQ 46 
8YQ H1  H1  H  0 1 N N N -4.990  59.331 -20.357 3.600  1.035  -1.085 H1  8YQ 47 
8YQ H2  H2  H  0 1 N N N -6.246  60.606 -20.513 2.898  0.850  0.540  H2  8YQ 48 
8YQ H3  H3  H  0 1 N N N -4.626  60.846 -21.250 4.636  1.186  0.355  H3  8YQ 49 
8YQ H4  H4  H  0 1 N N N -1.215  59.945 -19.205 7.686  -1.261 1.122  H4  8YQ 50 
8YQ H5  H5  H  0 1 N N N -9.250  59.586 -18.167 -0.325 0.056  0.368  H5  8YQ 51 
8YQ H6  H6  H  0 1 N N N -7.433  60.796 -18.997 1.530  -0.630 1.050  H6  8YQ 52 
8YQ H7  H7  H  0 1 N N N -7.066  59.721 -17.606 1.338  -0.609 -0.720 H7  8YQ 53 
8YQ H8  H8  H  0 1 N N N -12.700 62.991 -17.553 -4.882 -2.955 -0.831 H8  8YQ 54 
8YQ H10 H10 H  0 1 N N N -15.233 54.407 -19.697 -4.155 6.636  0.856  H10 8YQ 55 
8YQ H11 H11 H  0 1 N N N -14.834 55.335 -17.436 -3.386 5.508  2.904  H11 8YQ 56 
8YQ H12 H12 H  0 1 N N N -13.019 56.965 -17.043 -2.312 3.296  2.762  H12 8YQ 57 
8YQ H13 H13 H  0 1 N N N -10.503 57.570 -18.217 -1.300 1.740  -0.406 H13 8YQ 58 
8YQ H14 H14 H  0 1 N N N -10.862 58.357 -19.792 -1.107 1.720  1.363  H14 8YQ 59 
8YQ H15 H15 H  0 1 N N N -15.777 58.463 -19.228 -7.216 1.518  2.175  H15 8YQ 60 
8YQ H16 H16 H  0 1 N N N -13.218 54.057 -23.753 -5.967 5.572  -1.191 H16 8YQ 61 
8YQ H17 H17 H  0 1 N N N -12.217 55.146 -23.062 -5.702 5.822  -2.814 H17 8YQ 62 
8YQ H19 H19 H  0 1 N N N -14.471 55.705 -22.659 -3.921 6.833  -1.551 H19 8YQ 63 
8YQ H20 H20 H  0 1 N N N -14.678 54.080 -21.922 -3.341 5.460  -2.526 H20 8YQ 64 
8YQ H21 H21 H  0 1 N N N -14.702 65.253 -18.727 -6.509 -2.437 -3.703 H21 8YQ 65 
8YQ H22 H22 H  0 1 N N N 2.150   60.195 -23.944 11.684 2.593  -0.399 H22 8YQ 66 
8YQ H23 H23 H  0 1 N N N 2.336   58.803 -21.906 11.829 0.800  1.155  H23 8YQ 67 
8YQ H24 H24 H  0 1 N N N -1.770  62.748 -23.349 7.394  2.454  -2.123 H24 8YQ 68 
8YQ H25 H25 H  0 1 N N N -3.425  62.824 -21.480 5.532  0.857  -1.920 H25 8YQ 69 
8YQ H26 H26 H  0 1 N N N -1.876  62.390 -17.761 6.631  -3.001 -0.433 H26 8YQ 70 
8YQ H27 H27 H  0 1 N N N -3.444  62.656 -15.884 4.770  -4.598 -0.238 H27 8YQ 71 
8YQ H28 H28 H  0 1 N N N -5.755  61.884 -16.002 2.464  -3.780 0.017  H28 8YQ 72 
8YQ H29 H29 H  0 1 N N N -11.870 62.990 -15.789 -3.581 -3.637 0.677  H29 8YQ 73 
8YQ H30 H30 H  0 1 N N N -13.775 61.112 -15.709 -5.262 -2.065 1.315  H30 8YQ 74 
8YQ H31 H31 H  0 1 N N N -13.811 60.027 -17.139 -4.893 -0.329 1.451  H31 8YQ 75 
8YQ H32 H32 H  0 1 N N N -15.270 62.258 -16.924 -4.864 -0.181 -1.057 H32 8YQ 76 
8YQ H33 H33 H  0 1 N N N -12.995 64.082 -19.572 -6.834 -3.689 -1.675 H33 8YQ 77 
8YQ H34 H34 H  0 1 N N N -14.751 62.467 -20.857 -8.628 -1.788 -0.980 H34 8YQ 78 
8YQ H35 H35 H  0 1 N N N -13.274 61.749 -20.128 -7.625 -2.550 0.300  H35 8YQ 79 
8YQ H36 H36 H  0 1 N N N -16.003 61.967 -19.097 -7.181 0.131  -1.131 H36 8YQ 80 
8YQ H37 H37 H  0 1 N N N -11.998 56.793 -21.226 -2.776 3.344  -1.477 H37 8YQ 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8YQ O2  C19 SING N N 1  
8YQ O2  C18 SING N N 2  
8YQ C19 C20 DOUB N N 3  
8YQ N   C   SING N N 4  
8YQ C21 C18 DOUB Y N 5  
8YQ C21 C22 SING Y N 6  
8YQ C18 C17 SING Y N 7  
8YQ C   C1  SING N N 8  
8YQ C20 O3  SING N N 9  
8YQ C22 C15 DOUB Y N 10 
8YQ C17 O3  SING N N 11 
8YQ C17 C16 DOUB Y N 12 
8YQ C1  C35 DOUB Y N 13 
8YQ C1  C2  SING Y N 14 
8YQ C35 C5  SING Y N 15 
8YQ C13 C12 SING N N 16 
8YQ C15 C16 SING Y N 17 
8YQ C15 C14 SING N N 18 
8YQ O6  C34 DOUB N N 19 
8YQ C32 C31 SING N N 20 
8YQ C32 C33 SING N N 21 
8YQ C2  C3  DOUB Y N 22 
8YQ C34 C33 SING N N 23 
8YQ C34 O5  SING N N 24 
8YQ O4  C31 SING N N 25 
8YQ C31 N1  SING N N 26 
8YQ C12 C14 DOUB Y N 27 
8YQ C12 C11 SING Y N 28 
8YQ C5  C6  SING N N 29 
8YQ C5  C4  DOUB Y N 30 
8YQ C33 C30 SING N N 31 
8YQ C14 C23 SING Y N 32 
8YQ C6  O   SING N N 33 
8YQ C3  C4  SING Y N 34 
8YQ O   C7  SING N N 35 
8YQ C11 C10 SING N N 36 
8YQ C11 C25 DOUB Y N 37 
8YQ C10 O1  SING N N 38 
8YQ C23 C24 DOUB Y N 39 
8YQ N1  C30 SING N N 40 
8YQ C8  C7  DOUB Y N 41 
8YQ C8  C9  SING Y N 42 
8YQ C7  C28 SING Y N 43 
8YQ C30 C29 SING N N 44 
8YQ O1  C9  SING N N 45 
8YQ C9  C26 DOUB Y N 46 
8YQ C28 C29 SING N N 47 
8YQ C28 C27 DOUB Y N 48 
8YQ C25 C24 SING Y N 49 
8YQ C26 C27 SING Y N 50 
8YQ C26 CL  SING N N 51 
8YQ C13 H1  SING N N 52 
8YQ C13 H2  SING N N 53 
8YQ C13 H3  SING N N 54 
8YQ C16 H4  SING N N 55 
8YQ C8  H5  SING N N 56 
8YQ C10 H6  SING N N 57 
8YQ C10 H7  SING N N 58 
8YQ N1  H8  SING N N 59 
8YQ C2  H10 SING N N 60 
8YQ C3  H11 SING N N 61 
8YQ C4  H12 SING N N 62 
8YQ C6  H13 SING N N 63 
8YQ C6  H14 SING N N 64 
8YQ O5  H15 SING N N 65 
8YQ N   H16 SING N N 66 
8YQ N   H17 SING N N 67 
8YQ C   H19 SING N N 68 
8YQ C   H20 SING N N 69 
8YQ O4  H21 SING N N 70 
8YQ C19 H22 SING N N 71 
8YQ C20 H23 SING N N 72 
8YQ C21 H24 SING N N 73 
8YQ C22 H25 SING N N 74 
8YQ C23 H26 SING N N 75 
8YQ C24 H27 SING N N 76 
8YQ C25 H28 SING N N 77 
8YQ C27 H29 SING N N 78 
8YQ C29 H30 SING N N 79 
8YQ C29 H31 SING N N 80 
8YQ C30 H32 SING N N 81 
8YQ C31 H33 SING N N 82 
8YQ C32 H34 SING N N 83 
8YQ C32 H35 SING N N 84 
8YQ C33 H36 SING N N 85 
8YQ C35 H37 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8YQ InChI            InChI                1.03  
"InChI=1S/C36H35ClN2O7/c1-21-25(6-3-7-27(21)24-8-9-31-34(15-24)44-11-10-43-31)20-46-33-17-32(45-19-23-5-2-4-22(12-23)18-38)26(13-29(33)37)14-30-28(36(41)42)16-35(40)39-30/h2-13,15,17,28,30,35,39-40H,14,16,18-20,38H2,1H3,(H,41,42)/t28-,30-,35-/m1/s1" 
8YQ InChIKey         InChI                1.03  YRYUBNOJILTDAA-GMBIYBECSA-N 
8YQ SMILES_CANONICAL CACTVS               3.385 "Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[C@H]4N[C@H](O)C[C@H]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5" 
8YQ SMILES           CACTVS               3.385 "Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[CH]4N[CH](O)C[CH]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5" 
8YQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)C[C@@H]5[C@@H](C[C@H](N5)O)C(=O)O)OCc6cccc(c6)CN" 
8YQ SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)CC5C(CC(N5)O)C(=O)O)OCc6cccc(c6)CN" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8YQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8YQ "Create component"   2017-03-27 EBI  
8YQ "Other modification" 2017-03-28 EBI  
8YQ "Initial release"    2017-12-06 RCSB 
# 
