data_8LQ
#

_chem_comp.id                                   8LQ
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (3~{S})-3-oxidanylbutanoate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H20 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-02-09
_chem_comp.pdbx_modified_date                   2019-08-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.310
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8LQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5N45
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8LQ  N9     N1   N  0  1  Y  N  N  -14.932  -39.978   9.289  -3.356   0.331  -0.081  N9     8LQ   1  
8LQ  C8     C1   C  0  1  Y  N  N  -16.247  -39.963   9.018  -3.009   1.168  -1.099  C8     8LQ   2  
8LQ  N7     N2   N  0  1  Y  N  N  -16.919  -40.049  10.161  -3.958   2.033  -1.307  N7     8LQ   3  
8LQ  C5     C2   C  0  1  Y  N  N  -16.020  -40.143  11.155  -4.972   1.808  -0.438  C5     8LQ   4  
8LQ  C6     C3   C  0  1  Y  N  N  -16.127  -40.199  12.501  -6.221   2.406  -0.199  C6     8LQ   5  
8LQ  N6     N3   N  0  1  N  N  N  -17.338  -40.231  13.035  -6.644   3.487  -0.953  N6     8LQ   6  
8LQ  N1     N4   N  0  1  Y  N  N  -15.043  -40.261  13.298  -6.987   1.909   0.767  N1     8LQ   7  
8LQ  C2     C4   C  0  1  Y  N  N  -13.759  -40.228  12.749  -6.592   0.878   1.491  C2     8LQ   8  
8LQ  N3     N5   N  0  1  Y  N  N  -13.671  -40.096  11.371  -5.431   0.286   1.303  N3     8LQ   9  
8LQ  C4     C5   C  0  1  Y  N  N  -14.789  -40.090  10.607  -4.598   0.713   0.360  C4     8LQ  10  
8LQ  CAA    C6   C  0  1  N  N  N  -21.002  -39.386   4.849   8.213   2.678   1.438  CAA    8LQ  11  
8LQ  CAZ    C7   C  0  1  N  N  S  -20.543  -39.402   6.331   7.392   1.775   0.516  CAZ    8LQ  12  
8LQ  OAE    O1   O  0  1  N  N  N  -20.534  -38.073   6.844   7.241   2.405  -0.757  OAE    8LQ  13  
8LQ  CAL    C8   C  0  1  N  N  N  -19.135  -40.004   6.506   6.013   1.534   1.133  CAL    8LQ  14  
8LQ  CAS    C9   C  0  1  N  N  N  -18.114  -39.265   5.631   5.250   0.547   0.288  CAS    8LQ  15  
8LQ  OAC    O2   O  0  1  N  N  N  -17.674  -38.176   5.988   5.757   0.084  -0.706  OAC    8LQ  16  
8LQ  OAQ    O3   O  0  1  N  N  N  -17.822  -39.872   4.424   4.006   0.183   0.639  OAQ    8LQ  17  
8LQ  PBC    P1   P  0  1  N  N  N  -16.588  -39.434   3.505   3.258  -0.875  -0.315  PBC    8LQ  18  
8LQ  OAH    O4   O  0  1  N  N  N  -16.929  -37.948   3.061   4.037  -2.283  -0.271  OAH    8LQ  19  
8LQ  OAD    O5   O  0  1  N  N  N  -16.361  -40.335   2.361   3.243  -0.363  -1.704  OAD    8LQ  20  
8LQ  "O5'"  O6   O  0  1  N  N  N  -15.344  -39.475   4.478   1.745  -1.082   0.196  "O5'"  8LQ  21  
8LQ  "C5'"  C10  C  0  1  N  N  N  -15.126  -40.693   5.187   0.790  -1.883  -0.504  "C5'"  8LQ  22  
8LQ  "C4'"  C11  C  0  1  N  N  R  -13.928  -40.543   6.089  -0.541  -1.865   0.251  "C4'"  8LQ  23  
8LQ  "O4'"  O7   O  0  1  N  N  N  -14.167  -39.462   7.030  -1.153  -0.560   0.160  "O4'"  8LQ  24  
8LQ  "C3'"  C12  C  0  1  N  N  S  -13.843  -41.763   6.903  -1.551  -2.823  -0.418  "C3'"  8LQ  25  
8LQ  "O3'"  O8   O  0  1  N  N  N  -13.102  -42.794   6.191  -1.590  -4.072   0.274  "O3'"  8LQ  26  
8LQ  "C2'"  C13  C  0  1  N  N  R  -13.095  -41.240   8.131  -2.905  -2.090  -0.289  "C2'"  8LQ  27  
8LQ  "O2'"  O9   O  0  1  N  N  N  -11.657  -41.024   7.841  -3.822  -2.865   0.487  "O2'"  8LQ  28  
8LQ  "C1'"  C14  C  0  1  N  N  R  -13.775  -39.906   8.337  -2.553  -0.776   0.444  "C1'"  8LQ  29  
8LQ  H1     H1   H  0  1  N  N  N  -16.686  -39.893   8.034  -2.082   1.120  -1.652  H1     8LQ  30  
8LQ  H2     H2   H  0  1  N  N  N  -17.262  -40.302  14.030  -6.076   3.840  -1.655  H2     8LQ  31  
8LQ  H3     H3   H  0  1  N  N  N  -17.829  -39.393  12.797  -7.509   3.891  -0.779  H3     8LQ  32  
8LQ  H4     H4   H  0  1  N  N  N  -12.877  -40.302  13.368  -7.246   0.506   2.266  H4     8LQ  33  
8LQ  H5     H5   H  0  1  N  N  N  -22.009  -38.948   4.781   8.328   2.198   2.410  H5     8LQ  34  
8LQ  H6     H6   H  0  1  N  N  N  -20.300  -38.784   4.254   9.196   2.850   0.999  H6     8LQ  35  
8LQ  H7     H7   H  0  1  N  N  N  -21.023  -40.415   4.461   7.700   3.632   1.563  H7     8LQ  36  
8LQ  H8     H8   H  0  1  N  N  N  -21.254  -40.017   6.902   7.906   0.821   0.391  H8     8LQ  37  
8LQ  H9     H9   H  0  1  N  N  N  -19.667  -37.699   6.741   6.791   3.260  -0.722  H9     8LQ  38  
8LQ  H10    H10  H  0  1  N  N  N  -19.158  -41.065   6.216   6.130   1.135   2.141  H10    8LQ  39  
8LQ  H11    H11  H  0  1  N  N  N  -18.835  -39.919   7.561   5.465   2.476   1.176  H11    8LQ  40  
8LQ  H12    H12  H  0  1  N  N  N  -16.928  -37.892   2.113   4.085  -2.678   0.611  H12    8LQ  41  
8LQ  H13    H13  H  0  1  N  N  N  -16.014  -40.928   5.793   0.644  -1.481  -1.507  H13    8LQ  42  
8LQ  H14    H14  H  0  1  N  N  N  -14.945  -41.507   4.470   1.155  -2.907  -0.572  H14    8LQ  43  
8LQ  H15    H15  H  0  1  N  N  N  -13.011  -40.382   5.504  -0.388  -2.142   1.294  H15    8LQ  44  
8LQ  H16    H16  H  0  1  N  N  N  -14.844  -42.117   7.190  -1.298  -2.974  -1.467  H16    8LQ  45  
8LQ  H17    H17  H  0  1  N  N  N  -13.054  -43.577   6.727  -2.209  -4.712  -0.104  H17    8LQ  46  
8LQ  H18    H18  H  0  1  N  N  N  -13.242  -41.903   8.996  -3.321  -1.878  -1.274  H18    8LQ  47  
8LQ  H19    H19  H  0  1  N  N  N  -11.221  -40.700   8.621  -4.032  -3.727   0.103  H19    8LQ  48  
8LQ  H20    H20  H  0  1  N  N  N  -13.034  -39.205   8.748  -2.710  -0.885   1.516  H20    8LQ  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8LQ  OAD    PBC    DOUB  N  N   1  
8LQ  OAH    PBC    SING  N  N   2  
8LQ  PBC    OAQ    SING  N  N   3  
8LQ  PBC    "O5'"  SING  N  N   4  
8LQ  OAQ    CAS    SING  N  N   5  
8LQ  "O5'"  "C5'"  SING  N  N   6  
8LQ  CAA    CAZ    SING  N  N   7  
8LQ  "C5'"  "C4'"  SING  N  N   8  
8LQ  CAS    OAC    DOUB  N  N   9  
8LQ  CAS    CAL    SING  N  N  10  
8LQ  "C4'"  "C3'"  SING  N  N  11  
8LQ  "C4'"  "O4'"  SING  N  N  12  
8LQ  "O3'"  "C3'"  SING  N  N  13  
8LQ  CAZ    CAL    SING  N  N  14  
8LQ  CAZ    OAE    SING  N  N  15  
8LQ  "C3'"  "C2'"  SING  N  N  16  
8LQ  "O4'"  "C1'"  SING  N  N  17  
8LQ  "O2'"  "C2'"  SING  N  N  18  
8LQ  "C2'"  "C1'"  SING  N  N  19  
8LQ  "C1'"  N9     SING  N  N  20  
8LQ  C8     N9     SING  Y  N  21  
8LQ  C8     N7     DOUB  Y  N  22  
8LQ  N9     C4     SING  Y  N  23  
8LQ  N7     C5     SING  Y  N  24  
8LQ  C4     C5     DOUB  Y  N  25  
8LQ  C4     N3     SING  Y  N  26  
8LQ  C5     C6     SING  Y  N  27  
8LQ  N3     C2     DOUB  Y  N  28  
8LQ  C6     N6     SING  N  N  29  
8LQ  C6     N1     DOUB  Y  N  30  
8LQ  C2     N1     SING  Y  N  31  
8LQ  C8     H1     SING  N  N  32  
8LQ  N6     H2     SING  N  N  33  
8LQ  N6     H3     SING  N  N  34  
8LQ  C2     H4     SING  N  N  35  
8LQ  CAA    H5     SING  N  N  36  
8LQ  CAA    H6     SING  N  N  37  
8LQ  CAA    H7     SING  N  N  38  
8LQ  CAZ    H8     SING  N  N  39  
8LQ  OAE    H9     SING  N  N  40  
8LQ  CAL    H10    SING  N  N  41  
8LQ  CAL    H11    SING  N  N  42  
8LQ  OAH    H12    SING  N  N  43  
8LQ  "C5'"  H13    SING  N  N  44  
8LQ  "C5'"  H14    SING  N  N  45  
8LQ  "C4'"  H15    SING  N  N  46  
8LQ  "C3'"  H16    SING  N  N  47  
8LQ  "O3'"  H17    SING  N  N  48  
8LQ  "C2'"  H18    SING  N  N  49  
8LQ  "O2'"  H19    SING  N  N  50  
8LQ  "C1'"  H20    SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8LQ  InChI             InChI                 1.03   "InChI=1S/C14H20N5O9P/c1-6(20)2-8(21)28-29(24,25)26-3-7-10(22)11(23)14(27-7)19-5-18-9-12(15)16-4-17-13(9)19/h4-7,10-11,14,20,22-23H,2-3H2,1H3,(H,24,25)(H2,15,16,17)/t6-,7+,10+,11+,14+/m0/s1"  
8LQ  InChIKey          InChI                 1.03   ZNHASVNGLACCHV-LTOLZBHSSA-N  
8LQ  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](O)CC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
8LQ  SMILES            CACTVS                3.385  "C[CH](O)CC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
8LQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](CC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O"  
8LQ  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(CC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          8LQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (3~{S})-3-oxidanylbutanoate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8LQ  "Create component"  2017-02-09  EBI   
8LQ  "Initial release"   2019-08-28  RCSB  
##
