data_7RQ
# 
_chem_comp.id                                    7RQ 
_chem_comp.name                                  "N-[6-[[9-(dimethylamino)-12H-benzo[a]phenoxazin-5-yl]amino]hexyl]-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-[oxidanyl(oxidanylidene)-$l^4-azanyl]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C38 H39 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-10-15 
_chem_comp.pdbx_modified_date                    2022-09-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        677.746 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7RQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7VO8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7RQ C10 C1  C 0  1 Y N N -9.834  -1.251 91.630 6.290   2.006  0.073  C10 7RQ 1  
7RQ C13 C2  C 0  1 Y N N -11.438 -1.377 93.891 8.857   0.898  -0.085 C13 7RQ 2  
7RQ C15 C3  C 0  1 Y N N -10.825 -0.462 91.921 6.461   0.664  -0.187 C15 7RQ 3  
7RQ C17 C4  C 0  1 Y N N -13.638 -0.926 94.818 10.221  -1.088 -0.123 C17 7RQ 4  
7RQ C20 C5  C 0  1 Y N N -14.728 -1.407 95.510 11.434  -1.714 0.094  C20 7RQ 5  
7RQ C21 C6  C 0  1 Y N N -15.990 -0.959 95.177 11.499  -3.096 0.138  C21 7RQ 6  
7RQ C22 C7  C 0  1 Y N N -16.151 -0.038 94.150 10.347  -3.850 -0.036 C22 7RQ 7  
7RQ C26 C8  C 0  1 N N N -18.354 -0.715 93.786 11.699  -5.912 0.240  C26 7RQ 8  
7RQ C28 C9  C 0  1 Y N N -8.276  -4.170 93.307 8.382   4.976  0.705  C28 7RQ 9  
7RQ C01 C10 C 0  1 Y N N 2.566   -2.633 83.605 -8.235  -0.448 -0.814 C01 7RQ 10 
7RQ C02 C11 C 0  1 Y N N 1.199   -2.960 83.571 -8.408  0.912  -0.550 C02 7RQ 11 
7RQ C03 C12 C 0  1 Y N N 0.303   -2.387 84.485 -7.308  1.721  -0.359 C03 7RQ 12 
7RQ C04 C13 C 0  1 Y N N 0.764   -1.491 85.440 -6.023  1.181  -0.430 C04 7RQ 13 
7RQ C05 C14 C 0  1 Y N N 2.111   -1.163 85.440 -5.851  -0.179 -0.694 C05 7RQ 14 
7RQ C06 C15 C 0  1 Y N N 3.000   -1.725 84.548 -6.950  -0.988 -0.885 C06 7RQ 15 
7RQ C07 C16 C 0  1 N N N -0.050  -0.720 86.496 -4.843  2.051  -0.226 C07 7RQ 16 
7RQ C11 C17 C 0  1 Y N N -9.535  -2.265 92.528 7.415   2.834  0.261  C11 7RQ 17 
7RQ C12 C18 C 0  1 Y N N -10.353 -2.362 93.720 8.715   2.272  0.180  C12 7RQ 18 
7RQ C14 C19 C 0  1 Y N N -11.633 -0.428 92.943 7.739   0.105  -0.267 C14 7RQ 19 
7RQ C18 C20 C 0  1 Y N N -13.762 0.002  93.777 9.060   -1.839 -0.303 C18 7RQ 20 
7RQ C23 C21 C 0  1 Y N N -15.042 0.444  93.440 9.128   -3.221 -0.257 C23 7RQ 21 
7RQ C25 C22 C 0  1 N N N -17.680 1.716  93.737 9.199   -6.045 -0.174 C25 7RQ 22 
7RQ C27 C23 C 0  1 Y N N -8.518  -3.172 92.349 7.274   4.205  0.528  C27 7RQ 23 
7RQ C29 C24 C 0  1 Y N N -9.084  -4.252 94.469 9.660   4.424  0.624  C29 7RQ 24 
7RQ C30 C25 C 0  1 Y N N -10.122 -3.334 94.657 9.835   3.099  0.367  C30 7RQ 25 
7RQ C31 C26 C 0  1 N N N -7.674  -0.576 90.436 3.835   1.686  -0.058 C31 7RQ 26 
7RQ C32 C27 C 0  1 N N N -6.810  -1.194 89.326 2.559   2.520  0.071  C32 7RQ 27 
7RQ C33 C28 C 0  1 N N N -5.358  -1.398 89.783 1.339   1.621  -0.140 C33 7RQ 28 
7RQ C34 C29 C 0  1 N N N -4.522  -2.155 88.735 0.062   2.455  -0.011 C34 7RQ 29 
7RQ C35 C30 C 0  1 N N N -3.321  -1.303 88.309 -1.158  1.556  -0.222 C35 7RQ 30 
7RQ C36 C31 C 0  1 N N N -2.329  -1.941 87.315 -2.434  2.390  -0.093 C36 7RQ 31 
7RQ C38 C32 C 0  1 N N N 3.626   -3.185 82.629 -9.416  -1.319 -1.013 C38 7RQ 32 
7RQ C39 C33 C 0  1 N N N 4.571   -4.342 82.972 -10.204 -1.764 0.145  C39 7RQ 33 
7RQ C41 C34 C 0  1 N N N 4.225   -5.258 84.145 -9.904  -1.239 1.482  C41 7RQ 34 
7RQ C42 C35 C 0  1 N N N 5.219   -6.334 84.576 -10.905 -1.511 2.586  C42 7RQ 35 
7RQ C43 C36 C 0  1 N N N 6.627   -5.994 84.113 -11.355 -2.972 2.450  C43 7RQ 36 
7RQ C44 C37 C 0  1 N N N 6.698   -5.617 82.640 -12.071 -3.157 1.114  C44 7RQ 37 
7RQ C45 C38 C 0  1 N N N 5.596   -4.665 82.182 -11.227 -2.668 -0.026 C45 7RQ 38 
7RQ N09 N1  N 0  1 N N N -9.042  -1.098 90.404 5.003   2.546  0.144  N09 7RQ 39 
7RQ N16 N2  N 0  1 N N N -12.386 -1.347 95.104 10.136  0.317  -0.166 N16 7RQ 40 
7RQ N24 N3  N 0  1 N N N -17.326 0.314  93.897 10.414  -5.247 0.009  N24 7RQ 41 
7RQ N37 N4  N 0  1 N N N -1.292  -0.930 87.231 -3.602  1.529  -0.294 N37 7RQ 42 
7RQ N48 N5  N 1  1 N N N 0.654   -3.913 82.611 -9.770  1.484  -0.475 N48 7RQ 43 
7RQ O08 O1  O 0  1 N N N 0.451   0.303  86.777 -4.993  3.235  0.003  O08 7RQ 44 
7RQ O19 O2  O 0  1 N N N -12.632 0.353  93.202 7.872   -1.223 -0.526 O19 7RQ 45 
7RQ O40 O3  O 0  1 N N N 3.731   -2.664 81.562 -9.733  -1.666 -2.134 O40 7RQ 46 
7RQ O46 O4  O 0  1 N N N 5.852   -3.978 80.992 -11.472 -3.139 -1.258 O46 7RQ 47 
7RQ O47 O5  O 0  1 N N N 3.192   -5.151 84.711 -8.889  -0.609 1.696  O47 7RQ 48 
7RQ O49 O6  O 0  1 N N N 1.336   -4.685 82.056 -9.920  2.685  -0.332 O49 7RQ 49 
7RQ O50 O7  O -1 1 N N N -0.726  -3.938 82.364 -10.743 0.755  -0.556 O50 7RQ 50 
7RQ H1  H1  H 0  1 N N N -11.013 0.304  91.183 5.595   0.035  -0.331 H1  7RQ 51 
7RQ H2  H2  H 0  1 N N N -14.596 -2.127 96.304 12.330  -1.126 0.230  H2  7RQ 52 
7RQ H3  H3  H 0  1 N N N -16.852 -1.324 95.715 12.446  -3.588 0.307  H3  7RQ 53 
7RQ H4  H4  H 0  1 N N N -17.900 -1.706 93.935 12.187  -6.102 -0.716 H4  7RQ 54 
7RQ H5  H5  H 0  1 N N N -19.126 -0.546 94.552 12.335  -5.272 0.852  H5  7RQ 55 
7RQ H6  H6  H 0  1 N N N -18.812 -0.669 92.787 11.531  -6.857 0.757  H6  7RQ 56 
7RQ H7  H7  H 0  1 N N N -7.473  -4.876 93.158 8.271   6.030  0.910  H7  7RQ 57 
7RQ H8  H8  H 0  1 N N N -0.746  -2.643 84.446 -7.442  2.773  -0.155 H8  7RQ 58 
7RQ H9  H9  H 0  1 N N N 2.475   -0.446 86.160 -4.857  -0.596 -0.749 H9  7RQ 59 
7RQ H10 H10 H 0  1 N N N 4.044   -1.452 84.588 -6.817  -2.040 -1.089 H10 7RQ 60 
7RQ H11 H11 H 0  1 N N N -15.178 1.153  92.637 8.233   -3.811 -0.394 H11 7RQ 61 
7RQ H12 H12 H 0  1 N N N -16.780 2.338  93.854 8.729   -6.218 0.794  H12 7RQ 62 
7RQ H13 H13 H 0  1 N N N -18.108 1.874  92.736 8.507   -5.509 -0.823 H13 7RQ 63 
7RQ H14 H14 H 0  1 N N N -18.421 1.996  94.500 9.457   -7.001 -0.628 H14 7RQ 64 
7RQ H15 H15 H 0  1 N N N -7.900  -3.117 91.465 6.290   4.647  0.594  H15 7RQ 65 
7RQ H16 H16 H 0  1 N N N -8.899  -5.020 95.206 10.523  5.056  0.769  H16 7RQ 66 
7RQ H17 H17 H 0  1 N N N -10.741 -3.391 95.540 10.831  2.685  0.307  H17 7RQ 67 
7RQ H18 H18 H 0  1 N N N -7.224  -0.811 91.412 3.831   0.896  0.694  H18 7RQ 68 
7RQ H19 H19 H 0  1 N N N -7.704  0.515  90.300 3.879   1.241  -1.052 H19 7RQ 69 
7RQ H20 H20 H 0  1 N N N -6.818  -0.524 88.453 2.514   2.965  1.065  H20 7RQ 70 
7RQ H21 H21 H 0  1 N N N -7.235  -2.169 89.044 2.563   3.309  -0.681 H21 7RQ 71 
7RQ H22 H22 H 0  1 N N N -5.359  -1.974 90.720 1.383   1.176  -1.134 H22 7RQ 72 
7RQ H23 H23 H 0  1 N N N -4.900  -0.414 89.959 1.334   0.832  0.612  H23 7RQ 73 
7RQ H24 H24 H 0  1 N N N -5.147  -2.369 87.856 0.018   2.900  0.983  H24 7RQ 74 
7RQ H25 H25 H 0  1 N N N -4.163  -3.100 89.169 0.066   3.244  -0.762 H25 7RQ 75 
7RQ H26 H26 H 0  1 N N N -2.759  -1.043 89.218 -1.114  1.111  -1.216 H26 7RQ 76 
7RQ H27 H27 H 0  1 N N N -3.712  -0.386 87.845 -1.162  0.767  0.530  H27 7RQ 77 
7RQ H28 H28 H 0  1 N N N -2.800  -2.113 86.336 -2.478  2.835  0.901  H28 7RQ 78 
7RQ H29 H29 H 0  1 N N N -1.931  -2.891 87.702 -2.430  3.179  -0.844 H29 7RQ 79 
7RQ H31 H31 H 0  1 N N N 4.919   -7.297 84.137 -10.435 -1.357 3.557  H31 7RQ 80 
7RQ H32 H32 H 0  1 N N N 5.211   -6.412 85.673 -11.763 -0.848 2.480  H32 7RQ 81 
7RQ H33 H33 H 0  1 N N N 7.272   -6.869 84.282 -10.484 -3.626 2.490  H33 7RQ 82 
7RQ H34 H34 H 0  1 N N N 6.996   -5.147 84.709 -12.034 -3.221 3.266  H34 7RQ 83 
7RQ H35 H35 H 0  1 N N N 6.626   -6.539 82.044 -12.294 -4.214 0.970  H35 7RQ 84 
7RQ H36 H36 H 0  1 N N N 7.669   -5.135 82.454 -13.005 -2.594 1.128  H36 7RQ 85 
7RQ H38 H38 H 0  1 N N N -9.563  -0.488 89.806 4.883   3.491  0.327  H38 7RQ 86 
7RQ H39 H39 H 0  1 N N N -12.100 -1.616 96.024 10.932  0.865  -0.248 H39 7RQ 87 
7RQ H40 H40 H 0  1 N N N -1.481  -0.166 87.848 -3.483  0.584  -0.477 H40 7RQ 88 
7RQ H41 H41 H 0  1 N N N 5.180   -3.321 80.854 -10.968 -2.748 -1.985 H41 7RQ 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7RQ O46 C45 SING N N 1  
7RQ O40 C38 DOUB N N 2  
7RQ O49 N48 DOUB N N 3  
7RQ C45 C44 SING N N 4  
7RQ C45 C39 DOUB N N 5  
7RQ O50 N48 SING N N 6  
7RQ N48 C02 SING N N 7  
7RQ C38 C39 SING N N 8  
7RQ C38 C01 SING N N 9  
7RQ C44 C43 SING N N 10 
7RQ C39 C41 SING N N 11 
7RQ C02 C01 DOUB Y N 12 
7RQ C02 C03 SING Y N 13 
7RQ C01 C06 SING Y N 14 
7RQ C43 C42 SING N N 15 
7RQ C41 C42 SING N N 16 
7RQ C41 O47 DOUB N N 17 
7RQ C03 C04 DOUB Y N 18 
7RQ C06 C05 DOUB Y N 19 
7RQ C05 C04 SING Y N 20 
7RQ C04 C07 SING N N 21 
7RQ C07 O08 DOUB N N 22 
7RQ C07 N37 SING N N 23 
7RQ N37 C36 SING N N 24 
7RQ C36 C35 SING N N 25 
7RQ C35 C34 SING N N 26 
7RQ C34 C33 SING N N 27 
7RQ C32 C33 SING N N 28 
7RQ C32 C31 SING N N 29 
7RQ N09 C31 SING N N 30 
7RQ N09 C10 SING N N 31 
7RQ C10 C15 DOUB Y N 32 
7RQ C10 C11 SING Y N 33 
7RQ C15 C14 SING Y N 34 
7RQ C27 C11 DOUB Y N 35 
7RQ C27 C28 SING Y N 36 
7RQ C11 C12 SING Y N 37 
7RQ C14 O19 SING N N 38 
7RQ C14 C13 DOUB Y N 39 
7RQ O19 C18 SING N N 40 
7RQ C28 C29 DOUB Y N 41 
7RQ C23 C18 DOUB Y N 42 
7RQ C23 C22 SING Y N 43 
7RQ C12 C13 SING Y N 44 
7RQ C12 C30 DOUB Y N 45 
7RQ C25 N24 SING N N 46 
7RQ C18 C17 SING Y N 47 
7RQ C26 N24 SING N N 48 
7RQ C13 N16 SING N N 49 
7RQ N24 C22 SING N N 50 
7RQ C22 C21 DOUB Y N 51 
7RQ C29 C30 SING Y N 52 
7RQ C17 N16 SING N N 53 
7RQ C17 C20 DOUB Y N 54 
7RQ C21 C20 SING Y N 55 
7RQ C15 H1  SING N N 56 
7RQ C20 H2  SING N N 57 
7RQ C21 H3  SING N N 58 
7RQ C26 H4  SING N N 59 
7RQ C26 H5  SING N N 60 
7RQ C26 H6  SING N N 61 
7RQ C28 H7  SING N N 62 
7RQ C03 H8  SING N N 63 
7RQ C05 H9  SING N N 64 
7RQ C06 H10 SING N N 65 
7RQ C23 H11 SING N N 66 
7RQ C25 H12 SING N N 67 
7RQ C25 H13 SING N N 68 
7RQ C25 H14 SING N N 69 
7RQ C27 H15 SING N N 70 
7RQ C29 H16 SING N N 71 
7RQ C30 H17 SING N N 72 
7RQ C31 H18 SING N N 73 
7RQ C31 H19 SING N N 74 
7RQ C32 H20 SING N N 75 
7RQ C32 H21 SING N N 76 
7RQ C33 H22 SING N N 77 
7RQ C33 H23 SING N N 78 
7RQ C34 H24 SING N N 79 
7RQ C34 H25 SING N N 80 
7RQ C35 H26 SING N N 81 
7RQ C35 H27 SING N N 82 
7RQ C36 H28 SING N N 83 
7RQ C36 H29 SING N N 84 
7RQ C42 H31 SING N N 85 
7RQ C42 H32 SING N N 86 
7RQ C43 H33 SING N N 87 
7RQ C43 H34 SING N N 88 
7RQ C44 H35 SING N N 89 
7RQ C44 H36 SING N N 90 
7RQ N09 H38 SING N N 91 
7RQ N16 H39 SING N N 92 
7RQ N37 H40 SING N N 93 
7RQ O46 H41 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7RQ InChI            InChI                1.03  "InChI=1S/C38H39N5O7/c1-42(2)24-15-17-28-33(21-24)50-34-22-29(25-10-5-6-11-26(25)36(34)41-28)39-18-7-3-4-8-19-40-38(47)23-14-16-27(30(20-23)43(48)49)37(46)35-31(44)12-9-13-32(35)45/h5-6,10-11,14-17,20-22,39,41,44H,3-4,7-9,12-13,18-19H2,1-2H3,(H,40,47)" 
7RQ InChIKey         InChI                1.03  JKNRGQRJDMEUPO-UHFFFAOYSA-N                                                                                                                                                                                                                                  
7RQ SMILES_CANONICAL CACTVS               3.385 "CN(C)c1ccc2Nc3c(Oc2c1)cc(NCCCCCCNC(=O)c4ccc(C(=O)C5=C(O)CCCC5=O)c(c4)[N+]([O-])=O)c6ccccc36"                                                                                                                                                                
7RQ SMILES           CACTVS               3.385 "CN(C)c1ccc2Nc3c(Oc2c1)cc(NCCCCCCNC(=O)c4ccc(C(=O)C5=C(O)CCCC5=O)c(c4)[N+]([O-])=O)c6ccccc36"                                                                                                                                                                
7RQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)Oc3cc(c4ccccc4c3N2)NCCCCCCNC(=O)c5ccc(c(c5)[N+](=O)[O-])C(=O)C6=C(CCCC6=O)O"                                                                                                                                                                
7RQ SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)Oc3cc(c4ccccc4c3N2)NCCCCCCNC(=O)c5ccc(c(c5)[N+](=O)[O-])C(=O)C6=C(CCCC6=O)O"                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           7RQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[6-[[9-(dimethylamino)-12~{H}-benzo[a]phenoxazin-5-yl]amino]hexyl]-3-nitro-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7RQ "Create component"   2021-10-15 PDBJ 
7RQ "Modify coordinates" 2021-11-08 PDBJ 
7RQ "Modify formula"     2021-11-08 PDBJ 
7RQ "Modify name"        2021-11-08 PDBJ 
7RQ "Initial release"    2022-09-21 RCSB 
# 
