data_6VQ
# 
_chem_comp.id                                    6VQ 
_chem_comp.name                                  
;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H34 N10 O19 P4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2016-07-06 
_chem_comp.pdbx_modified_date                    2016-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        930.586 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6VQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KQ4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6VQ P10 P1  P 0 1 N N R -3.930  -12.880 -43.210 3.702  -2.831 -1.942 P10 6VQ 1  
6VQ P14 P2  P 0 1 N N N -4.298  -12.317 -40.139 1.090  -3.876 -1.008 P14 6VQ 2  
6VQ P18 P3  P 0 1 N N N -6.577  -13.769 -38.796 -1.123 -3.888 0.964  P18 6VQ 3  
6VQ P22 P4  P 0 1 N N R -8.095  -11.421 -37.411 -3.733 -2.852 1.912  P22 6VQ 4  
6VQ C01 C1  C 0 1 N N N -1.602  -8.462  -46.040 8.542  0.484  3.537  C01 6VQ 5  
6VQ N02 N1  N 1 1 Y N N -1.264  -9.722  -46.761 8.334  1.278  2.323  N02 6VQ 6  
6VQ C03 C2  C 0 1 Y N N -0.830  -10.908 -46.184 7.687  0.883  1.265  C03 6VQ 7  
6VQ N04 N2  N 0 1 Y N N -0.610  -11.879 -47.196 7.690  1.876  0.331  N04 6VQ 8  
6VQ C05 C3  C 0 1 N N R -0.092  -13.341 -46.751 7.067  1.821  -0.994 C05 6VQ 9  
6VQ O06 O1  O 0 1 N N N -0.689  -14.209 -45.817 6.075  0.774  -1.047 O06 6VQ 10 
6VQ C07 C4  C 0 1 N N R -0.151  -14.041 -44.465 5.887  0.442  -2.433 C07 6VQ 11 
6VQ C08 C5  C 0 1 N N N -1.236  -13.568 -43.403 5.594  -1.053 -2.575 C08 6VQ 12 
6VQ O09 O2  O 0 1 N N N -2.416  -13.399 -44.009 4.330  -1.349 -1.976 O09 6VQ 13 
6VQ O11 O3  O 0 1 N N N -4.151  -11.622 -43.980 3.631  -3.369 -3.319 O11 6VQ 14 
6VQ S12 S1  S 0 1 N N N -5.264  -14.258 -43.495 4.925  -4.090 -0.753 S12 6VQ 15 
6VQ O13 O4  O 0 1 N N N -3.474  -12.659 -41.741 2.221  -2.771 -1.312 O13 6VQ 16 
6VQ O15 O5  O 0 1 N N N -5.390  -11.460 -40.684 1.712  -5.058 -0.371 O15 6VQ 17 
6VQ O16 O6  O 0 1 N N N -3.217  -11.687 -39.334 0.387  -4.318 -2.388 O16 6VQ 18 
6VQ O17 O7  O 0 1 N N N -5.036  -13.576 -39.381 -0.016 -3.253 -0.018 O17 6VQ 19 
6VQ O19 O8  O 0 1 N N N -7.583  -13.598 -39.887 -1.748 -5.060 0.310  O19 6VQ 20 
6VQ O20 O9  O 0 1 N N N -6.781  -14.950 -37.898 -0.421 -4.351 2.336  O20 6VQ 21 
6VQ O21 O10 O 0 1 N N N -6.846  -12.272 -37.788 -2.253 -2.786 1.283  O21 6VQ 22 
6VQ O23 O11 O 0 1 N N N -7.670  -10.078 -36.945 -3.663 -3.410 3.281  O23 6VQ 23 
6VQ S24 S2  S 0 1 N N N -9.394  -12.288 -36.258 -4.959 -4.091 0.706  S24 6VQ 24 
6VQ O25 O12 O 0 1 N N N -8.997  -10.863 -38.923 -4.359 -1.370 1.968  O25 6VQ 25 
6VQ C26 C6  C 0 1 N N N -10.096 -11.463 -39.452 -5.622 -1.080 2.571  C26 6VQ 26 
6VQ C27 C7  C 0 1 N N R -11.002 -10.472 -40.350 -5.913 0.417  2.451  C27 6VQ 27 
6VQ O28 O13 O 0 1 N N N -11.335 -9.229  -39.684 -6.100 0.769  1.070  O28 6VQ 28 
6VQ C29 C8  C 0 1 N N R -10.525 -8.161  -40.116 -7.090 1.820  1.033  C29 6VQ 29 
6VQ N30 N3  N 0 1 Y N N -9.805  -7.340  -39.003 -7.713 1.895  -0.291 N30 6VQ 30 
6VQ C31 C9  C 0 1 Y N N -8.532  -7.554  -38.484 -7.786 0.887  -1.206 C31 6VQ 31 
6VQ N32 N4  N 1 1 Y N N -8.230  -6.611  -37.511 -8.408 1.308  -2.270 N32 6VQ 32 
6VQ C33 C10 C 0 1 N N N -6.963  -6.526  -36.733 -8.681 0.508  -3.467 C33 6VQ 33 
6VQ C34 C11 C 0 1 Y N N -9.360  -5.771  -37.415 -8.764 2.601  -2.093 C34 6VQ 34 
6VQ C35 C12 C 0 1 N N N -9.650  -4.602  -36.572 -9.467 3.595  -2.910 C35 6VQ 35 
6VQ O36 O14 O 0 1 N N N -8.868  -4.156  -35.757 -9.875 3.309  -4.025 O36 6VQ 36 
6VQ N37 N5  N 0 1 N N N -10.925 -4.009  -36.771 -9.654 4.825  -2.407 N37 6VQ 37 
6VQ C38 C13 C 0 1 N N N -11.831 -4.488  -37.683 -9.220 5.146  -1.207 C38 6VQ 38 
6VQ N39 N6  N 0 1 N N N -13.091 -3.822  -37.809 -9.440 6.417  -0.746 N39 6VQ 39 
6VQ N40 N7  N 0 1 N N N -11.593 -5.603  -38.509 -8.564 4.266  -0.407 N40 6VQ 40 
6VQ C41 C14 C 0 1 Y N N -10.355 -6.190  -38.327 -8.328 2.983  -0.830 C41 6VQ 41 
6VQ C42 C15 C 0 1 N N R -9.454  -8.742  -41.081 -8.125 1.378  2.099  C42 6VQ 42 
6VQ O43 O15 O 0 1 N N N -9.170  -7.895  -42.157 -8.843 2.504  2.609  O43 6VQ 43 
6VQ C44 C16 C 0 1 N N S -10.219 -9.952  -41.615 -7.221 0.758  3.191  C44 6VQ 44 
6VQ O45 O16 O 0 1 N N N -11.053 -9.406  -42.592 -6.974 1.704  4.233  O45 6VQ 45 
6VQ C46 C17 C 0 1 N N S 0.974   -12.967 -44.584 7.196  0.790  -3.168 C46 6VQ 46 
6VQ O47 O17 O 0 1 N N N 2.102   -13.338 -43.864 6.951  1.752  -4.196 O47 6VQ 47 
6VQ C48 C18 C 0 1 N N R 1.262   -12.957 -46.084 8.101  1.394  -2.066 C48 6VQ 48 
6VQ O49 O18 O 0 1 N N N 2.261   -13.870 -46.445 8.821  2.525  -2.560 O49 6VQ 49 
6VQ C50 C19 C 0 1 Y N N -0.912  -11.289 -48.447 8.376  2.929  0.854  C50 6VQ 50 
6VQ N51 N8  N 0 1 N N N -0.833  -11.881 -49.677 8.707  4.183  0.408  N51 6VQ 51 
6VQ C52 C20 C 0 1 N N N -1.201  -11.046 -50.750 9.415  5.031  1.198  C52 6VQ 52 
6VQ N53 N9  N 0 1 N N N -1.149  -11.580 -52.063 9.725  6.275  0.716  N53 6VQ 53 
6VQ N54 N10 N 0 1 N N N -1.608  -9.736  -50.589 9.816  4.704  2.407  N54 6VQ 54 
6VQ C55 C21 C 0 1 N N N -1.691  -9.116  -49.313 9.541  3.499  2.932  C55 6VQ 55 
6VQ O56 O19 O 0 1 N N N -2.052  -7.963  -49.203 9.918  3.208  4.056  O56 6VQ 56 
6VQ C57 C22 C 0 1 Y N N -1.317  -9.954  -48.158 8.779  2.541  2.126  C57 6VQ 57 
6VQ H1  H1  H 0 1 N N N -1.457  -8.607  -44.959 9.467  -0.086 3.444  H1  6VQ 58 
6VQ H2  H2  H 0 1 N N N -0.947  -7.651  -46.392 8.611  1.149  4.398  H2  6VQ 59 
6VQ H3  H3  H 0 1 N N N -2.651  -8.197  -46.237 7.705  -0.200 3.671  H3  6VQ 60 
6VQ H4  H4  H 0 1 N N N -0.682  -11.068 -45.126 7.219  -0.084 1.145  H4  6VQ 61 
6VQ H5  H5  H 0 1 N N N 0.137   -13.895 -47.673 6.625  2.784  -1.250 H5  6VQ 62 
6VQ H6  H6  H 0 1 N N N 0.293   -14.984 -44.114 5.062  1.022  -2.845 H6  6VQ 63 
6VQ H7  H7  H 0 1 N N N -1.335  -14.331 -42.617 5.566  -1.319 -3.631 H7  6VQ 64 
6VQ H8  H8  H 0 1 N N N -0.917  -12.617 -42.953 6.375  -1.626 -2.076 H8  6VQ 65 
6VQ H9  H9  H 0 1 N N N -6.065  -13.687 -44.346 4.899  -3.489 0.450  H9  6VQ 66 
6VQ H10 H10 H 0 1 N N N -3.375  -10.753 -39.267 -0.043 -3.592 -2.860 H10 6VQ 67 
6VQ H11 H11 H 0 1 N N N -7.554  -15.429 -38.174 0.010  -3.633 2.820  H11 6VQ 68 
6VQ H12 H12 H 0 1 N N N -9.557  -11.402 -35.321 -4.932 -3.473 -0.488 H12 6VQ 69 
6VQ H13 H13 H 0 1 N N N -10.714 -11.848 -38.627 -6.404 -1.644 2.064  H13 6VQ 70 
6VQ H14 H14 H 0 1 N N N -9.765  -12.301 -40.084 -5.595 -1.362 3.624  H14 6VQ 71 
6VQ H15 H15 H 0 1 N N N -11.907 -11.007 -40.673 -5.087 0.990  2.871  H15 6VQ 72 
6VQ H16 H16 H 0 1 N N N -11.138 -7.455  -40.696 -6.644 2.777  1.301  H16 6VQ 73 
6VQ H17 H17 H 0 1 N N N -7.868  -8.347  -38.796 -7.389 -0.108 -1.070 H17 6VQ 74 
6VQ H18 H18 H 0 1 N N N -7.016  -5.676  -36.037 -9.643 0.009  -3.359 H18 6VQ 75 
6VQ H19 H19 H 0 1 N N N -6.819  -7.457  -36.165 -8.705 1.159  -4.341 H19 6VQ 76 
6VQ H20 H20 H 0 1 N N N -6.118  -6.383  -37.423 -7.896 -0.238 -3.592 H20 6VQ 77 
6VQ H21 H21 H 0 1 N N N -13.295 -3.026  -37.239 -9.908 7.060  -1.302 H21 6VQ 78 
6VQ H22 H22 H 0 1 N N N -13.768 -4.153  -38.467 -9.128 6.674  0.135  H22 6VQ 79 
6VQ H23 H23 H 0 1 N N N -12.262 -5.941  -39.171 -8.253 4.549  0.467  H23 6VQ 80 
6VQ H24 H24 H 0 1 N N N -8.557  -9.053  -40.526 -8.810 0.635  1.691  H24 6VQ 81 
6VQ H25 H25 H 0 1 N N N -8.693  -7.135  -41.845 -9.503 2.279  3.279  H25 6VQ 82 
6VQ H26 H26 H 0 1 N N N -9.536  -10.725 -41.998 -7.677 -0.146 3.595  H26 6VQ 83 
6VQ H27 H27 H 0 1 N N N -11.575 -10.096 -42.985 -7.772 1.998  4.695  H27 6VQ 84 
6VQ H28 H28 H 0 1 N N N 0.584   -11.988 -44.269 7.649  -0.108 -3.587 H28 6VQ 85 
6VQ H29 H29 H 0 1 N N N 1.900   -13.337 -42.936 7.741  2.008  -4.692 H29 6VQ 86 
6VQ H30 H30 H 0 1 N N N 1.532   -11.936 -46.393 8.785  0.643  -1.670 H30 6VQ 87 
6VQ H31 H31 H 0 1 N N N 3.080   -13.624 -46.032 9.480  2.309  -3.234 H31 6VQ 88 
6VQ H32 H32 H 0 1 N N N -0.538  -12.828 -49.804 8.432  4.466  -0.478 H32 6VQ 89 
6VQ H33 H33 H 0 1 N N N -1.404  -11.011 -52.845 10.230 6.896  1.264  H33 6VQ 90 
6VQ H34 H34 H 0 1 N N N -0.858  -12.526 -52.207 9.439  6.536  -0.174 H34 6VQ 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6VQ N53 C52 SING N N 1  
6VQ C52 N54 DOUB N N 2  
6VQ C52 N51 SING N N 3  
6VQ N54 C55 SING N N 4  
6VQ N51 C50 SING N N 5  
6VQ C55 O56 DOUB N N 6  
6VQ C55 C57 SING N N 7  
6VQ C50 C57 DOUB Y N 8  
6VQ C50 N04 SING Y N 9  
6VQ C57 N02 SING Y N 10 
6VQ N04 C05 SING N N 11 
6VQ N04 C03 SING Y N 12 
6VQ N02 C03 DOUB Y N 13 
6VQ N02 C01 SING N N 14 
6VQ C05 C48 SING N N 15 
6VQ C05 O06 SING N N 16 
6VQ O49 C48 SING N N 17 
6VQ C48 C46 SING N N 18 
6VQ O06 C07 SING N N 19 
6VQ C46 C07 SING N N 20 
6VQ C46 O47 SING N N 21 
6VQ C07 C08 SING N N 22 
6VQ O09 C08 SING N N 23 
6VQ O09 P10 SING N N 24 
6VQ O11 P10 DOUB N N 25 
6VQ S12 P10 SING N N 26 
6VQ P10 O13 SING N N 27 
6VQ O45 C44 SING N N 28 
6VQ O43 C42 SING N N 29 
6VQ O13 P14 SING N N 30 
6VQ C44 C42 SING N N 31 
6VQ C44 C27 SING N N 32 
6VQ C42 C29 SING N N 33 
6VQ O15 P14 DOUB N N 34 
6VQ C27 O28 SING N N 35 
6VQ C27 C26 SING N N 36 
6VQ P14 O17 SING N N 37 
6VQ P14 O16 SING N N 38 
6VQ C29 O28 SING N N 39 
6VQ C29 N30 SING N N 40 
6VQ O19 P18 DOUB N N 41 
6VQ C26 O25 SING N N 42 
6VQ O17 P18 SING N N 43 
6VQ N30 C31 SING Y N 44 
6VQ N30 C41 SING Y N 45 
6VQ O25 P22 SING N N 46 
6VQ P18 O20 SING N N 47 
6VQ P18 O21 SING N N 48 
6VQ N40 C41 SING N N 49 
6VQ N40 C38 SING N N 50 
6VQ C31 N32 DOUB Y N 51 
6VQ C41 C34 DOUB Y N 52 
6VQ N39 C38 SING N N 53 
6VQ O21 P22 SING N N 54 
6VQ C38 N37 DOUB N N 55 
6VQ N32 C34 SING Y N 56 
6VQ N32 C33 SING N N 57 
6VQ C34 C35 SING N N 58 
6VQ P22 O23 DOUB N N 59 
6VQ P22 S24 SING N N 60 
6VQ N37 C35 SING N N 61 
6VQ C35 O36 DOUB N N 62 
6VQ C01 H1  SING N N 63 
6VQ C01 H2  SING N N 64 
6VQ C01 H3  SING N N 65 
6VQ C03 H4  SING N N 66 
6VQ C05 H5  SING N N 67 
6VQ C07 H6  SING N N 68 
6VQ C08 H7  SING N N 69 
6VQ C08 H8  SING N N 70 
6VQ S12 H9  SING N N 71 
6VQ O16 H10 SING N N 72 
6VQ O20 H11 SING N N 73 
6VQ S24 H12 SING N N 74 
6VQ C26 H13 SING N N 75 
6VQ C26 H14 SING N N 76 
6VQ C27 H15 SING N N 77 
6VQ C29 H16 SING N N 78 
6VQ C31 H17 SING N N 79 
6VQ C33 H18 SING N N 80 
6VQ C33 H19 SING N N 81 
6VQ C33 H20 SING N N 82 
6VQ N39 H21 SING N N 83 
6VQ N39 H22 SING N N 84 
6VQ N40 H23 SING N N 85 
6VQ C42 H24 SING N N 86 
6VQ O43 H25 SING N N 87 
6VQ C44 H26 SING N N 88 
6VQ O45 H27 SING N N 89 
6VQ C46 H28 SING N N 90 
6VQ O47 H29 SING N N 91 
6VQ C48 H30 SING N N 92 
6VQ O49 H31 SING N N 93 
6VQ N51 H32 SING N N 94 
6VQ N53 H33 SING N N 95 
6VQ N53 H34 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6VQ InChI            InChI                1.03  
;InChI=1S/C22H32N10O19P4S2/c1-29-5-31(15-9(29)17(37)27-21(23)25-15)19-13(35)11(33)7(47-19)3-45-54(43,56)50-52(39,40)49-53(41,42)51-55(44,57)46-4-8-12(34)14(36)20(48-8)32-6-30(2)10-16(32)26-22(24)28-18(10)38/h5-8,11-14,19-20,33-36H,3-4H2,1-2H3,(H8-2,23,24,25,26,27,28,37,38,39,40,41,42,43,44,56,57)/p+2/t7-,8-,11-,12-,13-,14-,19-,20-,54-,55-/m1/s1
;
6VQ InChIKey         InChI                1.03  SZQMTBAJCPCVLP-BZDQESSTSA-P 
6VQ SMILES_CANONICAL CACTVS               3.385 "C[n+]1cn([C@@H]2O[C@H](CO[P@](S)(=O)O[P](O)(=O)O[P](O)(=O)O[P@@](S)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4c[n+](C)c5C(=O)N=C(N)Nc45)[C@@H](O)[C@H]2O)c6NC(=NC(=O)c16)N" 
6VQ SMILES           CACTVS               3.385 "C[n+]1cn([CH]2O[CH](CO[P](S)(=O)O[P](O)(=O)O[P](O)(=O)O[P](S)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4c[n+](C)c5C(=O)N=C(N)Nc45)[CH](O)[CH]2O)c6NC(=NC(=O)c16)N" 
6VQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C[n+]1cn(c2c1C(=O)N=C(N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(OP(=O)(O)OP(=O)(O)O[P@@](=O)(OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5c[n+](c6c5NC(=NC6=O)N)C)O)O)S)S)O)O" 
6VQ SMILES           "OpenEye OEToolkits" 2.0.5 "C[n+]1cn(c2c1C(=O)N=C(N2)N)C3C(C(C(O3)COP(=O)(OP(=O)(O)OP(=O)(O)OP(=O)(OCC4C(C(C(O4)n5c[n+](c6c5NC(=NC6=O)N)C)O)O)S)S)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6VQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 
;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6VQ "Create component" 2016-07-06 RCSB 
6VQ "Initial release"  2016-10-05 RCSB 
# 
