data_6NQ
# 
_chem_comp.id                                    6NQ 
_chem_comp.name                                  
;2'-Bromo-2'-deoxyadenosine 5'-[beta,gamma-imide]triphosphoric acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 Br N6 O11 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-11 
_chem_comp.pdbx_modified_date                    2017-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        569.093 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6NQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JVL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6NQ C4    C1  C  0 1 Y N N 62.200 12.853 -61.868 4.834  -1.491 0.315  C4    6NQ 1  
6NQ C5    C2  C  0 1 Y N N 62.717 12.665 -60.602 4.997  -2.674 -0.424 C5    6NQ 2  
6NQ C6    C3  C  0 1 Y N N 63.984 13.215 -60.339 6.189  -3.400 -0.260 C6    6NQ 3  
6NQ C8    C4  C  0 1 Y N N 60.828 11.711 -60.629 3.056  -1.855 -0.936 C8    6NQ 4  
6NQ N1    N1  N  0 1 Y N N 64.608 13.869 -61.345 7.103  -2.934 0.585  N1    6NQ 5  
6NQ N3    N2  N  0 1 Y N N 62.790 13.472 -62.878 5.805  -1.103 1.137  N3    6NQ 6  
6NQ PG    P1  P  0 1 N N N 54.497 5.359  -60.792 -7.460 -1.218 0.954  PG    6NQ 7  
6NQ O1G   O1  O  0 1 N N N 55.396 5.181  -59.617 -7.912 -2.236 2.117  O1G   6NQ 8  
6NQ O2G   O2  O  0 1 N N N 53.363 4.335  -60.893 -7.913 -1.802 -0.477 O2G   6NQ 9  
6NQ O3G   O3  O  0 1 N N N 55.571 5.246  -61.855 -8.099 0.098  1.174  O3G   6NQ 10 
6NQ PB    P2  P  0 1 N N N 54.708 8.155  -61.686 -5.271 0.017  -0.221 PB    6NQ 11 
6NQ O1B   O4  O  0 1 N N N 54.311 9.512  -61.258 -5.947 1.461  0.009  O1B   6NQ 12 
6NQ O2B   O5  O  0 1 N N N 54.190 7.914  -63.087 -5.670 -0.509 -1.545 O2B   6NQ 13 
6NQ N3B   N3  N  0 1 N N N 53.911 6.976  -60.732 -5.786 -1.041 0.982  N3B   6NQ 14 
6NQ PA    P3  P  0 1 N N N 57.143 8.745  -60.834 -2.587 0.995  -1.011 PA    6NQ 15 
6NQ O1A   O6  O  0 1 N N N 56.219 9.053  -59.694 -2.380 0.297  -2.448 O1A   6NQ 16 
6NQ O2A   O7  O  0 1 N N N 58.454 8.123  -60.662 -3.071 2.380  -1.201 O2A   6NQ 17 
6NQ O3A   O8  O  0 1 N N N 56.320 7.967  -61.853 -3.669 0.160  -0.160 O3A   6NQ 18 
6NQ "O5'" O9  O  0 1 N N N 57.618 10.153 -61.370 -1.185 1.020  -0.220 "O5'" 6NQ 19 
6NQ "C5'" C5  C  0 1 N N N 56.824 10.957 -62.279 -0.053 1.770  -0.666 "C5'" 6NQ 20 
6NQ "C4'" C6  C  0 1 N N R 57.800 11.596 -63.249 1.107  1.573  0.312  "C4'" 6NQ 21 
6NQ "O4'" O10 O  0 1 N N N 58.779 12.347 -62.501 1.556  0.208  0.269  "O4'" 6NQ 22 
6NQ "C3'" C7  C  0 1 N N R 58.582 10.608 -64.120 2.297  2.461  -0.100 "C3'" 6NQ 23 
6NQ "O3'" O11 O  0 1 N N N 58.656 10.965 -65.498 2.622  3.379  0.946  "O3'" 6NQ 24 
6NQ "C2'" C8  C  0 1 N N R 60.000 10.681 -63.528 3.457  1.461  -0.323 "C2'" 6NQ 25 
6NQ BR    BR1 BR 0 0 N N N 61.327 10.450 -64.978 5.143  2.170  0.398  BR    6NQ 26 
6NQ "C1'" C9  C  0 1 N N R 60.068 12.113 -62.997 2.984  0.228  0.487  "C1'" 6NQ 27 
6NQ N9    N4  N  0 1 Y N N 60.993 12.220 -61.884 3.601  -0.997 -0.028 N9    6NQ 28 
6NQ N7    N5  N  0 1 Y N N 61.837 11.946 -59.820 3.879  -2.835 -1.171 N7    6NQ 29 
6NQ N6    N6  N  0 1 N N N 64.609 13.112 -59.158 6.406  -4.573 -0.961 N6    6NQ 30 
6NQ C2    C10 C  0 1 Y N N 63.991 13.947 -62.524 6.905  -1.816 1.259  C2    6NQ 31 
6NQ H1    H1  H  0 1 N N N 59.947 11.164 -60.327 2.086  -1.735 -1.397 H1    6NQ 32 
6NQ H2    H2  H  0 1 N N N 56.290 5.063  -59.917 -8.866 -2.385 2.159  H2    6NQ 33 
6NQ H3    H3  H  0 1 N N N 53.516 3.765  -61.637 -7.531 -2.665 -0.688 H3    6NQ 34 
6NQ H4    H4  H  0 1 N N N 53.820 9.933  -61.954 -5.728 1.867  0.859  H4    6NQ 35 
6NQ H5    H5  H  0 1 N N N 53.965 7.277  -59.780 -5.326 -1.935 0.898  H5    6NQ 36 
6NQ H6    H6  H  0 1 N N N 56.622 8.783  -58.877 -2.063 -0.615 -2.400 H6    6NQ 37 
6NQ H7    H7  H  0 1 N N N 56.278 11.733 -61.723 0.244  1.425  -1.656 H7    6NQ 38 
6NQ H8    H8  H  0 1 N N N 56.108 10.322 -62.822 -0.313 2.827  -0.712 H8    6NQ 39 
6NQ H9    H9  H  0 1 N N N 57.242 12.275 -63.911 0.786  1.825  1.323  H9    6NQ 40 
6NQ H10   H10 H  0 1 N N N 58.177 9.594  -63.990 2.072  2.996  -1.022 H10   6NQ 41 
6NQ H11   H11 H  0 1 N N N 57.788 10.926 -65.883 3.400  3.923  0.764  H11   6NQ 42 
6NQ H12   H12 H  0 1 N N N 60.195 9.916  -62.762 3.560  1.215  -1.380 H12   6NQ 43 
6NQ H13   H13 H  0 1 N N N 60.334 12.807 -63.808 3.208  0.355  1.546  H13   6NQ 44 
6NQ H14   H14 H  0 1 N N N 65.499 13.566 -59.210 5.731  -4.903 -1.575 H14   6NQ 45 
6NQ H15   H15 H  0 1 N N N 64.054 13.547 -58.448 7.233  -5.065 -0.839 H15   6NQ 46 
6NQ H16   H16 H  0 1 N N N 64.534 14.465 -63.301 7.674  -1.473 1.935  H16   6NQ 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6NQ "O3'" "C3'" SING N N 1  
6NQ BR    "C2'" SING N N 2  
6NQ "C3'" "C2'" SING N N 3  
6NQ "C3'" "C4'" SING N N 4  
6NQ "C2'" "C1'" SING N N 5  
6NQ "C4'" "O4'" SING N N 6  
6NQ "C4'" "C5'" SING N N 7  
6NQ O2B   PB    DOUB N N 8  
6NQ "C1'" "O4'" SING N N 9  
6NQ "C1'" N9    SING N N 10 
6NQ N3    C2    DOUB Y N 11 
6NQ N3    C4    SING Y N 12 
6NQ C2    N1    SING Y N 13 
6NQ "C5'" "O5'" SING N N 14 
6NQ N9    C4    SING Y N 15 
6NQ N9    C8    SING Y N 16 
6NQ C4    C5    DOUB Y N 17 
6NQ O3G   PG    DOUB N N 18 
6NQ O3A   PB    SING N N 19 
6NQ O3A   PA    SING N N 20 
6NQ PB    O1B   SING N N 21 
6NQ PB    N3B   SING N N 22 
6NQ "O5'" PA    SING N N 23 
6NQ N1    C6    DOUB Y N 24 
6NQ O2G   PG    SING N N 25 
6NQ PA    O2A   DOUB N N 26 
6NQ PA    O1A   SING N N 27 
6NQ PG    N3B   SING N N 28 
6NQ PG    O1G   SING N N 29 
6NQ C8    N7    DOUB Y N 30 
6NQ C5    C6    SING Y N 31 
6NQ C5    N7    SING Y N 32 
6NQ C6    N6    SING N N 33 
6NQ C8    H1    SING N N 34 
6NQ O1G   H2    SING N N 35 
6NQ O2G   H3    SING N N 36 
6NQ O1B   H4    SING N N 37 
6NQ N3B   H5    SING N N 38 
6NQ O1A   H6    SING N N 39 
6NQ "C5'" H7    SING N N 40 
6NQ "C5'" H8    SING N N 41 
6NQ "C4'" H9    SING N N 42 
6NQ "C3'" H10   SING N N 43 
6NQ "O3'" H11   SING N N 44 
6NQ "C2'" H12   SING N N 45 
6NQ "C1'" H13   SING N N 46 
6NQ N6    H14   SING N N 47 
6NQ N6    H15   SING N N 48 
6NQ C2    H16   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6NQ SMILES           ACDLabs              12.01 "c12c(c(N)ncn1)ncn2C3OC(COP(=O)(O)OP(O)(NP(O)(O)=O)=O)C(C3Br)O"                                                                                                                                           
6NQ InChI            InChI                1.03  "InChI=1S/C10H16BrN6O11P3/c11-5-7(18)4(1-26-31(24,25)28-30(22,23)16-29(19,20)21)27-10(5)17-3-15-6-8(12)13-2-14-9(6)17/h2-5,7,10,18H,1H2,(H,24,25)(H2,12,13,14)(H4,16,19,20,21,22,23)/t4-,5-,7-,10-/m1/s1" 
6NQ InChIKey         InChI                1.03  GLCRVGHVCJLAHS-QYYRPYCUSA-N                                                                                                                                                                               
6NQ SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3Br"                                                                                                                     
6NQ SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3Br"                                                                                                                           
6NQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)Br)N"                                                                                                                     
6NQ SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)Br)N"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6NQ "SYSTEMATIC NAME" ACDLabs              12.01 "2'-bromo-2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]adenosine"                                                             
6NQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-bromanyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6NQ "Create component" 2016-05-11 EBI  
6NQ "Initial release"  2017-04-05 RCSB 
# 
