data_5KQ
#

_chem_comp.id                                   5KQ
_chem_comp.name                                 "(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic acid"
_chem_comp.type                                 "L-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H22 N2 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(6R)-5-(acetylamino)-6-[(1S,2S)-3-(acetylamino)-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic
acid; (6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulosonic acid;
(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-L-threo-hex-2-ulosonic acid;
(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-threo-hex-2-ulosonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-14
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       350.322
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5KQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5E66
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  5KQ  
;(6R)-5-(acetylamino)-6-[(1S,2S)-3-(acetylamino)-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic
acid
;
  PDB  ?  
2  5KQ  "(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulosonic acid"  PDB  ?  
3  5KQ  "(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-L-threo-hex-2-ulosonic acid"  PDB  ?  
4  5KQ  "(6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-dihydroxypropyl]-3,5-dideoxy-threo-hex-2-ulosonic acid"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5KQ  C11   CAW  C  0  1  N  N  N  24.916   5.885  -15.338   2.462   4.286  -0.918  C11   5KQ   1  
5KQ  C10   CAV  C  0  1  N  N  N  26.292   5.324  -14.974   2.427   3.046  -0.062  C10   5KQ   2  
5KQ  O10   OAX  O  0  1  N  N  N  26.920   5.759  -14.011   2.972   3.041   1.021  O10   5KQ   3  
5KQ  N5    NAU  N  0  1  N  N  N  26.733   4.345  -15.775   1.790   1.942  -0.501  N5    5KQ   4  
5KQ  C5    CAT  C  0  1  N  N  R  28.031   3.672  -15.598   1.755   0.737   0.331  C5    5KQ   5  
5KQ  C4    CAR  C  0  1  N  N  S  28.708   3.508  -16.944   3.024  -0.088   0.090  C4    5KQ   6  
5KQ  O4    OAS  O  0  1  N  N  N  28.991   4.801  -17.500   4.168   0.664   0.502  O4    5KQ   7  
5KQ  C3    CAQ  C  0  1  N  N  N  30.005   2.739  -16.764   2.941  -1.382   0.905  C3    5KQ   8  
5KQ  C2    CAL  C  0  1  N  N  R  29.725   1.408  -16.083   1.671  -2.142   0.514  C2    5KQ   9  
5KQ  C1    CAN  C  0  1  N  N  N  28.833   0.545  -16.981   1.742  -2.523  -0.942  C1    5KQ  10  
5KQ  O1B   OAP  O  0  1  N  N  N  27.983  -0.174  -16.415   1.953  -1.579  -1.874  O1B   5KQ  11  
5KQ  O1A   OAO  O  0  1  N  N  N  29.027   0.624  -18.213   1.610  -3.678  -1.272  O1A   5KQ  12  
5KQ  O2    OAM  O  0  1  N  Y  N  30.963   0.725  -15.847   1.558  -3.323   1.310  O2    5KQ  13  
5KQ  O6    OAK  O  0  1  N  N  N  29.076   1.635  -14.814   0.531  -1.308   0.733  O6    5KQ  14  
5KQ  C6    CAJ  C  0  1  N  N  R  27.812   2.303  -14.977   0.531  -0.105  -0.039  C6    5KQ  15  
5KQ  C7    CAH  C  0  1  N  N  S  27.130   2.327  -13.633  -0.742   0.690   0.255  C7    5KQ  16  
5KQ  O7    OAI  O  0  1  N  N  N  26.807   3.568  -13.002  -0.742   1.893  -0.515  O7    5KQ  17  
5KQ  C8    CAF  C  0  1  N  N  S  25.958   1.376  -13.713  -1.965  -0.152  -0.114  C8    5KQ  18  
5KQ  O8    OAG  O  0  1  N  N  N  26.502   0.064  -13.826  -1.966  -1.355   0.657  O8    5KQ  19  
5KQ  C9    CAE  C  0  1  N  N  N  25.171   1.416  -12.434  -3.239   0.643   0.180  C9    5KQ  20  
5KQ  NAD   NAD  N  0  1  N  N  N  23.944   0.622  -12.586  -4.411  -0.163  -0.173  NAD   5KQ  21  
5KQ  CAB   CAB  C  0  1  N  N  N  23.058   0.484  -11.591  -5.650   0.337   0.002  CAB   5KQ  22  
5KQ  OAC   OAC  O  0  1  N  N  N  23.185   0.999  -10.481  -5.796   1.454   0.452  OAC   5KQ  23  
5KQ  CAA   CAA  C  0  1  N  N  N  21.840  -0.378  -11.925  -6.855  -0.492  -0.362  CAA   5KQ  24  
5KQ  H111  H1   H  0  0  N  N  N  24.642   6.677  -14.626   3.341   4.257  -1.563  H111  5KQ  25  
5KQ  H113  H2   H  0  0  N  N  N  24.948   6.302  -16.355   1.562   4.330  -1.531  H113  5KQ  26  
5KQ  H112  H3   H  0  0  N  N  N  24.169   5.079  -15.295   2.510   5.167  -0.279  H112  5KQ  27  
5KQ  HN5   H4   H  0  1  N  N  N  26.150   4.056  -16.534   1.354   1.946  -1.368  HN5   5KQ  28  
5KQ  H5    H5   H  0  1  N  N  N  28.676   4.271  -14.938   1.699   1.021   1.382  H5    5KQ  29  
5KQ  H4    H6   H  0  1  N  N  N  28.044   2.942  -17.615   3.106  -0.329  -0.970  H4    5KQ  30  
5KQ  HO4   H7   H  0  1  N  Y  N  28.180   5.282  -17.613   5.007   0.199   0.384  HO4   5KQ  31  
5KQ  H32   H8   H  0  1  N  N  N  30.461   2.557  -17.748   3.814  -2.000   0.697  H32   5KQ  32  
5KQ  H31   H9   H  0  1  N  N  N  30.696   3.328  -16.143   2.908  -1.141   1.968  H31   5KQ  33  
5KQ  HO1B  H10  H  0  0  N  N  N  27.495  -0.662  -17.068   1.991  -1.872  -2.795  HO1B  5KQ  34  
5KQ  HO2   H11  H  0  1  N  Y  N  31.518   1.258  -15.290   0.774  -3.855   1.116  HO2   5KQ  35  
5KQ  H6    H12  H  0  1  N  N  N  27.186   1.717  -15.665   0.568  -0.354  -1.099  H6    5KQ  36  
5KQ  H7    H13  H  0  1  N  N  N  27.840   1.832  -12.954  -0.779   0.938   1.316  H7    5KQ  37  
5KQ  HO7   H14  H  0  1  N  Y  N  26.936   4.280  -13.618  -0.710   1.748  -1.471  HO7   5KQ  38  
5KQ  H8    H15  H  0  1  N  N  N  25.316   1.627  -14.570  -1.929  -0.400  -1.175  H8    5KQ  39  
5KQ  HO8   H16  H  0  1  N  Y  N  25.795  -0.569  -13.879  -1.998  -1.210   1.613  HO8   5KQ  40  
5KQ  H92   H17  H  0  1  N  N  N  25.778   0.999  -11.617  -3.276   0.891   1.241  H92   5KQ  41  
5KQ  H91   H18  H  0  1  N  N  N  24.906   2.458  -12.199  -3.239   1.561  -0.408  H91   5KQ  42  
5KQ  H19   H19  H  0  1  N  N  N  23.765   0.170  -13.460  -4.294  -1.056  -0.533  H19   5KQ  43  
5KQ  H20   H20  H  0  1  N  N  N  21.176  -0.430  -11.050  -6.528  -1.458  -0.747  H20   5KQ  44  
5KQ  H21   H21  H  0  1  N  N  N  21.297   0.067  -12.771  -7.472  -0.643   0.523  H21   5KQ  45  
5KQ  H22   H22  H  0  1  N  N  N  22.171  -1.392  -12.195  -7.435   0.026  -1.125  H22   5KQ  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5KQ  O1A  C1    DOUB  N  N   1  
5KQ  O4   C4    SING  N  N   2  
5KQ  C1   O1B   SING  N  N   3  
5KQ  C1   C2    SING  N  N   4  
5KQ  C4   C3    SING  N  N   5  
5KQ  C4   C5    SING  N  N   6  
5KQ  C3   C2    SING  N  N   7  
5KQ  C2   O2    SING  N  N   8  
5KQ  C2   O6    SING  N  N   9  
5KQ  N5   C5    SING  N  N  10  
5KQ  N5   C10   SING  N  N  11  
5KQ  C5   C6    SING  N  N  12  
5KQ  C11  C10   SING  N  N  13  
5KQ  C6   O6    SING  N  N  14  
5KQ  C6   C7    SING  N  N  15  
5KQ  C10  O10   DOUB  N  N  16  
5KQ  O8   C8    SING  N  N  17  
5KQ  C8   C7    SING  N  N  18  
5KQ  C8   C9    SING  N  N  19  
5KQ  C7   O7    SING  N  N  20  
5KQ  NAD  C9    SING  N  N  21  
5KQ  NAD  CAB   SING  N  N  22  
5KQ  CAA  CAB   SING  N  N  23  
5KQ  CAB  OAC   DOUB  N  N  24  
5KQ  C11  H111  SING  N  N  25  
5KQ  C11  H113  SING  N  N  26  
5KQ  C11  H112  SING  N  N  27  
5KQ  N5   HN5   SING  N  N  28  
5KQ  C5   H5    SING  N  N  29  
5KQ  C4   H4    SING  N  N  30  
5KQ  O4   HO4   SING  N  N  31  
5KQ  C3   H32   SING  N  N  32  
5KQ  C3   H31   SING  N  N  33  
5KQ  O1B  HO1B  SING  N  N  34  
5KQ  O2   HO2   SING  N  N  35  
5KQ  C6   H6    SING  N  N  36  
5KQ  C7   H7    SING  N  N  37  
5KQ  O7   HO7   SING  N  N  38  
5KQ  C8   H8    SING  N  N  39  
5KQ  O8   HO8   SING  N  N  40  
5KQ  C9   H92   SING  N  N  41  
5KQ  C9   H91   SING  N  N  42  
5KQ  NAD  H19   SING  N  N  43  
5KQ  CAA  H20   SING  N  N  44  
5KQ  CAA  H21   SING  N  N  45  
5KQ  CAA  H22   SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5KQ  SMILES            ACDLabs               12.01  "CC(=O)NC1C(OC(CC1O)(O)C(O)=O)C(O)C(CNC(=O)C)O"  
5KQ  InChI             InChI                 1.03   "InChI=1S/C13H22N2O9/c1-5(16)14-4-8(19)10(20)11-9(15-6(2)17)7(18)3-13(23,24-11)12(21)22/h7-11,18-20,23H,3-4H2,1-2H3,(H,14,16)(H,15,17)(H,21,22)/t7-,8-,9+,10-,11+,13+/m0/s1"  
5KQ  InChIKey          InChI                 1.03   VOVFDZJABRGWTQ-IAGKUOAJSA-N  
5KQ  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)NC[C@H](O)[C@H](O)[C@@H]1O[C@](O)(C[C@H](O)[C@H]1NC(C)=O)C(O)=O"  
5KQ  SMILES            CACTVS                3.385  "CC(=O)NC[CH](O)[CH](O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=O)C(O)=O"  
5KQ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC(=O)NC[C@@H]([C@@H]([C@H]1[C@@H]([C@H](C[C@@](O1)(C(=O)O)O)O)NC(=O)C)O)O"  
5KQ  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(=O)NCC(C(C1C(C(CC(O1)(C(=O)O)O)O)NC(=O)C)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5KQ  "SYSTEMATIC NAME"            ACDLabs               12.01  
;(6R)-5-(acetylamino)-6-[(1S,2S)-3-(acetylamino)-1,2-dihydroxypropyl]-3,5-dideoxy-beta-L-threo-hex-2-ulopyranosonic
acid
;
  
5KQ  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.9.2  "(2R,4S,5R,6R)-5-acetamido-6-[(1S,2S)-3-acetamido-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-carboxylic acid"  
5KQ  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-Neup5Ac9NAc  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5KQ  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
5KQ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5KQ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
5KQ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5KQ  "Create component"          2015-10-14  RCSB  
5KQ  "Initial release"           2016-03-23  RCSB  
5KQ  "Other modification"        2020-07-03  RCSB  
5KQ  "Modify name"               2020-07-17  RCSB  
5KQ  "Modify synonyms"           2020-07-17  RCSB  
5KQ  "Modify internal type"      2020-07-17  RCSB  
5KQ  "Modify linking type"       2020-07-17  RCSB  
5KQ  "Modify atom id"            2020-07-17  RCSB  
5KQ  "Modify component atom id"  2020-07-17  RCSB  
5KQ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
