data_5AQ
# 
_chem_comp.id                                    5AQ 
_chem_comp.name                                  "8-({2-oxo-2-[(2-phenylethyl)amino]ethyl}sulfanyl)adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-31 
_chem_comp.pdbx_modified_date                    2016-09-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.507 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5AQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DHP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5AQ C2    C1  C 0 1 Y N N 13.909 -19.318 -44.909 5.759   2.863  -0.221 C2    5AQ 1  
5AQ C4    C2  C 0 1 Y N N 11.716 -18.805 -44.820 3.960   1.433  -0.174 C4    5AQ 2  
5AQ C5    C3  C 0 1 Y N N 11.707 -18.316 -46.097 3.096   2.539  -0.148 C5    5AQ 3  
5AQ C6    C4  C 0 1 Y N N 12.869 -18.327 -46.802 3.662   3.825  -0.172 C6    5AQ 4  
5AQ N9    N1  N 0 1 Y N N 10.521 -18.695 -44.359 3.156   0.317  -0.154 N9    5AQ 5  
5AQ CBA   C5  C 0 1 Y N N 8.473  -20.638 -47.456 -7.753  0.402  -1.050 CBA   5AQ 6  
5AQ CBB   C6  C 0 1 Y N N 9.236  -21.319 -46.535 -8.984  -0.225 -1.017 CBB   5AQ 7  
5AQ CBC   C7  C 0 1 Y N N 10.542 -21.614 -46.837 -9.564  -0.546 0.196  CBC   5AQ 8  
5AQ CBD   C8  C 0 1 Y N N 11.067 -21.224 -48.056 -8.913  -0.239 1.376  CBD   5AQ 9  
5AQ CBE   C9  C 0 1 Y N N 10.300 -20.543 -48.967 -7.681  0.388  1.343  CBE   5AQ 10 
5AQ CAZ   C10 C 0 1 Y N N 8.999  -20.232 -48.663 -7.099  0.704  0.130  CAZ   5AQ 11 
5AQ CAY   C11 C 0 1 N N N 8.115  -19.499 -49.677 -5.756  1.388  0.094  CAY   5AQ 12 
5AQ CAX   C12 C 0 1 N N N 8.363  -18.012 -49.818 -4.648  0.334  0.062  CAX   5AQ 13 
5AQ NAW   N2  N 0 1 N N N 8.533  -17.449 -48.500 -3.343  0.999  0.027  NAW   5AQ 14 
5AQ CAV   C13 C 0 1 N N N 7.517  -17.087 -47.778 -2.213  0.265  -0.006 CAV   5AQ 15 
5AQ OBF   O1  O 0 1 N N N 6.380  -17.152 -48.186 -2.276  -0.947 -0.006 OBF   5AQ 16 
5AQ CAU   C14 C 0 1 N N N 7.869  -16.533 -46.410 -0.871  0.949  -0.042 CAU   5AQ 17 
5AQ SAT   S1  S 0 1 N N N 8.149  -17.806 -45.140 0.441   -0.298 -0.080 SAT   5AQ 18 
5AQ C8    C15 C 0 1 Y N N 9.785  -18.143 -45.296 1.858   0.749  -0.118 C8    5AQ 19 
5AQ N7    N3  N 0 1 Y N N 10.494 -17.912 -46.368 1.827   2.059  -0.114 N7    5AQ 20 
5AQ N6    N4  N 0 1 N N N 12.946 -17.869 -48.013 2.858   4.953  -0.153 N6    5AQ 21 
5AQ N1    N5  N 0 1 Y N N 13.964 -18.828 -46.192 4.986   3.933  -0.203 N1    5AQ 22 
5AQ N3    N6  N 0 1 Y N N 12.795 -19.298 -44.253 5.272   1.640  -0.210 N3    5AQ 23 
5AQ "C1'" C16 C 0 1 N N R 10.166 -19.127 -43.042 3.606   -1.077 -0.170 "C1'" 5AQ 24 
5AQ "O4'" O2  O 0 1 N N N 9.121  -20.076 -43.132 2.740   -1.881 -1.000 "O4'" 5AQ 25 
5AQ "C4'" C17 C 0 1 N N R 8.464  -20.022 -41.915 2.907   -3.246 -0.581 "C4'" 5AQ 26 
5AQ "C5'" C18 C 0 1 N N N 7.079  -20.488 -42.223 1.581   -3.998 -0.717 "C5'" 5AQ 27 
5AQ "O5'" O3  O 0 1 N N N 6.894  -21.806 -41.776 1.233   -4.102 -2.099 "O5'" 5AQ 28 
5AQ "C3'" C19 C 0 1 N N S 8.330  -18.528 -41.662 3.345   -3.221 0.896  "C3'" 5AQ 29 
5AQ "O3'" O4  O 0 1 N N N 8.173  -18.248 -40.294 4.613   -3.863 1.052  "O3'" 5AQ 30 
5AQ "C2'" C20 C 0 1 N N R 9.642  -17.986 -42.195 3.455   -1.715 1.234  "C2'" 5AQ 31 
5AQ "O2'" O5  O 0 1 N N N 10.519 -17.839 -41.151 4.608   -1.455 2.038  "O2'" 5AQ 32 
5AQ H1    H1  H 0 1 N N N 14.799 -19.721 -44.448 6.831   2.996  -0.250 H1    5AQ 33 
5AQ H2    H2  H 0 1 N N N 7.441  -20.417 -47.228 -7.299  0.653  -1.998 H2    5AQ 34 
5AQ H3    H3  H 0 1 N N N 8.813  -21.617 -45.587 -9.493  -0.465 -1.939 H3    5AQ 35 
5AQ H4    H4  H 0 1 N N N 11.156 -22.148 -46.127 -10.526 -1.036 0.222  H4    5AQ 36 
5AQ H5    H5  H 0 1 N N N 12.094 -21.459 -48.294 -9.366  -0.489 2.324  H5    5AQ 37 
5AQ H6    H6  H 0 1 N N N 10.719 -20.253 -49.919 -7.170  0.623  2.265  H6    5AQ 38 
5AQ H7    H7  H 0 1 N N N 7.067  -19.639 -49.373 -5.690  2.012  -0.797 H7    5AQ 39 
5AQ H8    H8  H 0 1 N N N 8.276  -19.962 -50.662 -5.641  2.009  0.982  H8    5AQ 40 
5AQ H9    H9  H 0 1 N N N 9.272  -17.842 -50.414 -4.713  -0.290 0.953  H9    5AQ 41 
5AQ H10   H10 H 0 1 N N N 7.504  -17.538 -50.316 -4.763  -0.287 -0.827 H10   5AQ 42 
5AQ H11   H11 H 0 1 N N N 9.457  -17.335 -48.134 -3.292  1.967  0.027  H11   5AQ 43 
5AQ H12   H12 H 0 1 N N N 8.786  -15.934 -46.506 -0.805  1.573  -0.933 H12   5AQ 44 
5AQ H13   H13 H 0 1 N N N 7.043  -15.888 -46.076 -0.755  1.570  0.846  H13   5AQ 45 
5AQ H14   H14 H 0 1 N N N 13.884 -17.962 -48.346 3.261   5.836  -0.162 H14   5AQ 46 
5AQ H15   H15 H 0 1 N N N 12.329 -18.388 -48.605 1.893   4.861  -0.131 H15   5AQ 47 
5AQ H16   H16 H 0 1 N N N 11.040 -19.569 -42.542 4.639   -1.142 -0.513 H16   5AQ 48 
5AQ H17   H17 H 0 1 N N N 8.942  -20.565 -41.086 3.673   -3.729 -1.187 H17   5AQ 49 
5AQ H18   H18 H 0 1 N N N 6.355  -19.830 -41.720 1.684   -4.996 -0.292 H18   5AQ 50 
5AQ H19   H19 H 0 1 N N N 6.917  -20.448 -43.310 0.799   -3.455 -0.186 H19   5AQ 51 
5AQ H20   H20 H 0 1 N N N 6.010  -22.088 -41.979 0.401   -4.568 -2.261 H20   5AQ 52 
5AQ H21   H21 H 0 1 N N N 7.494  -18.125 -42.253 2.596   -3.702 1.525  H21   5AQ 53 
5AQ H22   H22 H 0 1 N N N 7.344  -18.600 -39.991 4.616   -4.796 0.798  H22   5AQ 54 
5AQ H23   H23 H 0 1 N N N 9.493  -17.072 -42.789 2.550   -1.360 1.728  H23   5AQ 55 
5AQ H24   H24 H 0 1 N N N 10.228 -17.130 -40.590 4.561   -1.834 2.927  H24   5AQ 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5AQ CAX   CAY   SING N N 1  
5AQ CAX   NAW   SING N N 2  
5AQ CAY   CAZ   SING N N 3  
5AQ CBE   CAZ   DOUB Y N 4  
5AQ CBE   CBD   SING Y N 5  
5AQ CAZ   CBA   SING Y N 6  
5AQ NAW   CAV   SING N N 7  
5AQ OBF   CAV   DOUB N N 8  
5AQ CBD   CBC   DOUB Y N 9  
5AQ N6    C6    SING N N 10 
5AQ CAV   CAU   SING N N 11 
5AQ CBA   CBB   DOUB Y N 12 
5AQ CBC   CBB   SING Y N 13 
5AQ C6    N1    DOUB Y N 14 
5AQ C6    C5    SING Y N 15 
5AQ CAU   SAT   SING N N 16 
5AQ N7    C5    SING Y N 17 
5AQ N7    C8    DOUB Y N 18 
5AQ N1    C2    SING Y N 19 
5AQ C5    C4    DOUB Y N 20 
5AQ C8    SAT   SING N N 21 
5AQ C8    N9    SING Y N 22 
5AQ C2    N3    DOUB Y N 23 
5AQ C4    N9    SING Y N 24 
5AQ C4    N3    SING Y N 25 
5AQ N9    "C1'" SING N N 26 
5AQ "O4'" "C1'" SING N N 27 
5AQ "O4'" "C4'" SING N N 28 
5AQ "C1'" "C2'" SING N N 29 
5AQ "C5'" "C4'" SING N N 30 
5AQ "C5'" "O5'" SING N N 31 
5AQ "C2'" "C3'" SING N N 32 
5AQ "C2'" "O2'" SING N N 33 
5AQ "C4'" "C3'" SING N N 34 
5AQ "C3'" "O3'" SING N N 35 
5AQ C2    H1    SING N N 36 
5AQ CBA   H2    SING N N 37 
5AQ CBB   H3    SING N N 38 
5AQ CBC   H4    SING N N 39 
5AQ CBD   H5    SING N N 40 
5AQ CBE   H6    SING N N 41 
5AQ CAY   H7    SING N N 42 
5AQ CAY   H8    SING N N 43 
5AQ CAX   H9    SING N N 44 
5AQ CAX   H10   SING N N 45 
5AQ NAW   H11   SING N N 46 
5AQ CAU   H12   SING N N 47 
5AQ CAU   H13   SING N N 48 
5AQ N6    H14   SING N N 49 
5AQ N6    H15   SING N N 50 
5AQ "C1'" H16   SING N N 51 
5AQ "C4'" H17   SING N N 52 
5AQ "C5'" H18   SING N N 53 
5AQ "C5'" H19   SING N N 54 
5AQ "O5'" H20   SING N N 55 
5AQ "C3'" H21   SING N N 56 
5AQ "O3'" H22   SING N N 57 
5AQ "C2'" H23   SING N N 58 
5AQ "O2'" H24   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5AQ SMILES           ACDLabs              12.01 "c4nc3n(C1C(C(C(O1)CO)O)O)c(SCC(NCCc2ccccc2)=O)nc3c(n4)N"                                                                                                                                                    
5AQ InChI            InChI                1.03  "InChI=1S/C20H24N6O5S/c21-17-14-18(24-10-23-17)26(19-16(30)15(29)12(8-27)31-19)20(25-14)32-9-13(28)22-7-6-11-4-2-1-3-5-11/h1-5,10,12,15-16,19,27,29-30H,6-9H2,(H,22,28)(H2,21,23,24)/t12-,15-,16-,19-/m1/s1" 
5AQ InChIKey         InChI                1.03  WAETXEWYOOCYCX-BGIGGGFGSA-N                                                                                                                                                                                  
5AQ SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c(SCC(=O)NCCc4ccccc4)nc12"                                                                                                                                      
5AQ SMILES           CACTVS               3.385 "Nc1ncnc2n([CH]3O[CH](CO)[CH](O)[CH]3O)c(SCC(=O)NCCc4ccccc4)nc12"                                                                                                                                            
5AQ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CCNC(=O)CSc2nc3c(ncnc3n2[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O)N"                                                                                                                                    
5AQ SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)CCNC(=O)CSc2nc3c(ncnc3n2C4C(C(C(O4)CO)O)O)N"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5AQ "SYSTEMATIC NAME" ACDLabs              12.01 "8-({2-oxo-2-[(2-phenylethyl)amino]ethyl}sulfanyl)adenosine"                                                                  
5AQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[6-azanyl-9-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-(2-phenylethyl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5AQ "Create component" 2015-08-31 EBI  
5AQ "Initial release"  2016-09-14 RCSB 
# 
