data_1YQ
#

_chem_comp.id                                   1YQ
_chem_comp.name                                 "(2E)-3-(3-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H16 Cl N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(E)-3-(3-bromo-5-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-08-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       409.822
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1YQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4LSL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1YQ  O12  O12  O   0  1  N  N  N  496.017  -30.845  23.210  -4.991   3.757  -1.630  O12  1YQ   1  
1YQ  C17  C17  C   0  1  N  N  N  499.360  -23.458  28.921   7.980   1.352   1.090  C17  1YQ   2  
1YQ  C00  C00  C   0  1  Y  N  N  495.211  -23.629  19.373  -1.103  -2.708   0.212  C00  1YQ   3  
1YQ  C01  C01  C   0  1  Y  N  N  496.119  -22.904  18.583  -0.238  -3.590  -0.410  C01  1YQ   4  
1YQ  C02  C02  C   0  1  Y  N  N  497.355  -22.485  19.112   0.989  -3.148  -0.875  C02  1YQ   5  
1YQ  C03  C03  C   0  1  Y  N  N  497.669  -22.804  20.446   1.354  -1.824  -0.719  C03  1YQ   6  
1YQ  C04  C04  C   0  1  Y  N  N  496.763  -23.536  21.270   0.492  -0.936  -0.096  C04  1YQ   7  
1YQ  C05  C05  C   0  1  Y  N  N  495.493  -23.967  20.715  -0.742  -1.379   0.370  C05  1YQ   8  
1YQ  CL1  CL1  CL  0  0  N  N  N  495.679  -22.544  16.966  -0.691  -5.254  -0.608  CL1  1YQ   9  
1YQ  O0A  O0A  O   0  1  N  N  N  497.170  -23.797  22.564   0.851   0.366   0.058  O0A  1YQ  10  
1YQ  O0B  O0B  O   0  1  N  N  N  494.424  -24.681  21.250  -1.591  -0.511   0.982  O0B  1YQ  11  
1YQ  C0C  C0C  C   0  1  Y  N  N  496.845  -22.965  23.610   2.060   0.757  -0.423  C0C  1YQ  12  
1YQ  C0D  C0D  C   0  1  Y  N  N  495.912  -21.898  23.503   2.172   1.220  -1.727  C0D  1YQ  13  
1YQ  C0E  C0E  C   0  1  Y  N  N  495.620  -21.085  24.620   3.400   1.618  -2.224  C0E  1YQ  14  
1YQ  C0F  C0F  C   0  1  Y  N  N  496.261  -21.339  25.844   4.523   1.559  -1.427  C0F  1YQ  15  
1YQ  C0G  C0G  C   0  1  Y  N  N  497.186  -22.385  25.992   4.423   1.094  -0.111  C0G  1YQ  16  
1YQ  C0H  C0H  C   0  1  Y  N  N  497.475  -23.204  24.853   3.180   0.697   0.390  C0H  1YQ  17  
1YQ  C0M  C0M  C   0  1  N  N  N  497.772  -22.516  27.334   5.620   1.028   0.743  C0M  1YQ  18  
1YQ  C0O  C0O  C   0  1  N  N  N  494.211  -24.969  22.624  -2.840  -1.036   1.436  C0O  1YQ  19  
1YQ  C0P  C0P  C   0  1  N  N  N  493.224  -26.132  22.800  -3.655   0.080   2.092  C0P  1YQ  20  
1YQ  N0S  N0S  N   0  1  N  N  N  493.954  -27.408  22.874  -4.001   1.088   1.086  N0S  1YQ  21  
1YQ  C0V  C0V  C   0  1  N  N  N  493.881  -28.354  21.882  -5.145   0.968   0.388  C0V  1YQ  22  
1YQ  N0W  N0W  N   0  1  N  N  N  494.613  -29.475  22.095  -5.487   1.879  -0.541  N0W  1YQ  23  
1YQ  C0X  C0X  C   0  1  N  N  N  495.408  -29.774  23.155  -4.683   2.933  -0.789  C0X  1YQ  24  
1YQ  C0Y  C0Y  C   0  1  N  N  N  495.464  -28.740  24.199  -3.476   3.072  -0.061  C0Y  1YQ  25  
1YQ  C0Z  C0Z  C   0  1  N  N  N  494.748  -27.596  24.037  -3.160   2.146   0.869  C0Z  1YQ  26  
1YQ  O10  O10  O   0  1  N  N  N  493.209  -28.236  20.856  -5.879   0.023   0.600  O10  1YQ  27  
1YQ  C15  C15  C   0  1  N  N  N  498.545  -23.533  27.737   6.816   1.416   0.259  C15  1YQ  28  
1YQ  N19  N19  N   0  1  N  N  N  499.873  -23.456  29.954   8.904   1.301   1.749  N19  1YQ  29  
1YQ  H1   H1   H   0  1  N  N  N  494.270  -23.937  18.941  -2.062  -3.053   0.569  H1   1YQ  30  
1YQ  H2   H2   H   0  1  N  N  N  498.051  -21.927  18.503   1.662  -3.840  -1.360  H2   1YQ  31  
1YQ  H3   H3   H   0  1  N  N  N  498.617  -22.488  20.855   2.312  -1.482  -1.082  H3   1YQ  32  
1YQ  H7   H7   H   0  1  N  N  N  495.422  -21.708  22.559   1.296   1.269  -2.357  H7   1YQ  33  
1YQ  H8   H8   H   0  1  N  N  N  494.910  -20.275  24.534   3.479   1.977  -3.239  H8   1YQ  34  
1YQ  H9   H9   H   0  1  N  N  N  496.036  -20.713  26.695   5.481   1.870  -1.818  H9   1YQ  35  
1YQ  H10  H10  H   0  1  N  N  N  498.183  -24.014  24.945   3.094   0.341   1.406  H10  1YQ  36  
1YQ  H11  H11  H   0  1  N  N  N  497.564  -21.733  28.049   5.539   0.669   1.759  H11  1YQ  37  
1YQ  H12  H12  H   0  1  N  N  N  495.171  -25.240  23.087  -3.394  -1.440   0.588  H12  1YQ  38  
1YQ  H13  H13  H   0  1  N  N  N  493.804  -24.075  23.119  -2.659  -1.828   2.162  H13  1YQ  39  
1YQ  H14  H14  H   0  1  N  N  N  492.651  -25.986  23.728  -4.568  -0.337   2.517  H14  1YQ  40  
1YQ  H15  H15  H   0  1  N  N  N  492.534  -26.157  21.943  -3.065   0.544   2.883  H15  1YQ  41  
1YQ  H16  H16  H   0  1  N  N  N  494.561  -30.172  21.379  -6.315   1.777  -1.036  H16  1YQ  42  
1YQ  H17  H17  H   0  1  N  N  N  496.066  -28.888  25.083  -2.819   3.909  -0.245  H17  1YQ  43  
1YQ  H18  H18  H   0  1  N  N  N  494.783  -26.827  24.795  -2.245   2.237   1.437  H18  1YQ  44  
1YQ  H19  H19  H   0  1  N  N  N  498.557  -24.441  27.153   6.897   1.776  -0.757  H19  1YQ  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1YQ  O12  C0X  DOUB  N  N   1  
1YQ  C17  C15  SING  N  N   2  
1YQ  C17  N19  TRIP  N  N   3  
1YQ  C00  C01  DOUB  Y  N   4  
1YQ  C00  C05  SING  Y  N   5  
1YQ  C01  C02  SING  Y  N   6  
1YQ  C02  C03  DOUB  Y  N   7  
1YQ  C03  C04  SING  Y  N   8  
1YQ  C04  C05  DOUB  Y  N   9  
1YQ  C04  O0A  SING  N  N  10  
1YQ  C05  O0B  SING  N  N  11  
1YQ  O0A  C0C  SING  N  N  12  
1YQ  O0B  C0O  SING  N  N  13  
1YQ  C0C  C0D  DOUB  Y  N  14  
1YQ  C0C  C0H  SING  Y  N  15  
1YQ  C0D  C0E  SING  Y  N  16  
1YQ  C0E  C0F  DOUB  Y  N  17  
1YQ  C0F  C0G  SING  Y  N  18  
1YQ  C0G  C0H  DOUB  Y  N  19  
1YQ  C0G  C0M  SING  N  N  20  
1YQ  C0M  C15  DOUB  N  E  21  
1YQ  C0O  C0P  SING  N  N  22  
1YQ  C0P  N0S  SING  N  N  23  
1YQ  N0S  C0V  SING  N  N  24  
1YQ  N0S  C0Z  SING  N  N  25  
1YQ  C0V  N0W  SING  N  N  26  
1YQ  C0V  O10  DOUB  N  N  27  
1YQ  N0W  C0X  SING  N  N  28  
1YQ  C0X  C0Y  SING  N  N  29  
1YQ  C0Y  C0Z  DOUB  N  N  30  
1YQ  C01  CL1  SING  N  N  31  
1YQ  C00  H1   SING  N  N  32  
1YQ  C02  H2   SING  N  N  33  
1YQ  C03  H3   SING  N  N  34  
1YQ  C0D  H7   SING  N  N  35  
1YQ  C0E  H8   SING  N  N  36  
1YQ  C0F  H9   SING  N  N  37  
1YQ  C0H  H10  SING  N  N  38  
1YQ  C0M  H11  SING  N  N  39  
1YQ  C0O  H12  SING  N  N  40  
1YQ  C0O  H13  SING  N  N  41  
1YQ  C0P  H14  SING  N  N  42  
1YQ  C0P  H15  SING  N  N  43  
1YQ  N0W  H16  SING  N  N  44  
1YQ  C0Y  H17  SING  N  N  45  
1YQ  C0Z  H18  SING  N  N  46  
1YQ  C15  H19  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1YQ  SMILES            ACDLabs               12.01  "N#C\C=C\c3cc(Oc2ccc(Cl)cc2OCCN1C=CC(=O)NC1=O)ccc3"  
1YQ  InChI             InChI                 1.03   "InChI=1S/C21H16ClN3O4/c22-16-6-7-18(29-17-5-1-3-15(13-17)4-2-9-23)19(14-16)28-12-11-25-10-8-20(26)24-21(25)27/h1-8,10,13-14H,11-12H2,(H,24,26,27)/b4-2+"  
1YQ  InChIKey          InChI                 1.03   AXHHDHSEUVTPBV-DUXPYHPUSA-N  
1YQ  SMILES_CANONICAL  CACTVS                3.385  "Clc1ccc(Oc2cccc(\C=C\C#N)c2)c(OCCN3C=CC(=O)NC3=O)c1"  
1YQ  SMILES            CACTVS                3.385  "Clc1ccc(Oc2cccc(C=CC#N)c2)c(OCCN3C=CC(=O)NC3=O)c1"  
1YQ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(cc(c1)Oc2ccc(cc2OCCN3C=CC(=O)NC3=O)Cl)/C=C/C#N"  
1YQ  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(cc(c1)Oc2ccc(cc2OCCN3C=CC(=O)NC3=O)Cl)C=CC#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1YQ  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2E)-3-(3-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile"  
1YQ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(E)-3-[3-[2-[2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]ethoxy]-4-chloranyl-phenoxy]phenyl]prop-2-enenitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1YQ  "Create component"  2013-08-07  RCSB  
1YQ  "Initial release"   2013-12-25  RCSB  
1YQ  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     1YQ
_pdbx_chem_comp_synonyms.name        "(E)-3-(3-bromo-5-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
