data_1KQ
#

_chem_comp.id                                   1KQ
_chem_comp.name                                 " 2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1R)-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H32 N6 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-02
_chem_comp.pdbx_modified_date                   2022-01-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       512.669
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1KQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7F83
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1KQ  C11  C1   C  0  1  Y  N  N   -8.447   7.627  17.452  -4.324  -1.933   0.476  C11  1KQ   1  
1KQ  C12  C2   C  0  1  Y  N  N   -8.146   7.932  18.781  -4.829  -1.564  -0.758  C12  1KQ   2  
1KQ  C13  C3   C  0  1  Y  N  N   -9.147   8.465  19.622  -5.245  -0.263  -0.974  C13  1KQ   3  
1KQ  C14  C4   C  0  1  N  N  N   -6.662   7.599  19.038  -4.820  -2.756  -1.692  C14  1KQ   4  
1KQ  C01  C5   C  0  1  N  N  N  -12.679   9.176  23.495  -5.880   5.373   1.643  C01  1KQ   5  
1KQ  C02  C6   C  0  1  Y  N  N  -12.617   9.371  21.978  -5.950   4.310   0.576  C02  1KQ   6  
1KQ  C04  C7   C  0  1  Y  N  N  -13.569  10.144  20.030  -6.494   3.678  -1.568  C04  1KQ   7  
1KQ  C06  C8   C  0  1  Y  N  N  -11.507   9.149  19.879  -5.604   2.072  -0.180  C06  1KQ   8  
1KQ  C07  C9   C  0  1  Y  N  N  -11.519   8.918  21.251  -5.520   3.023   0.842  C07  1KQ   9  
1KQ  C08  C10  C  0  1  Y  N  N  -10.442   8.674  19.105  -5.158   0.677   0.050  C08  1KQ  10  
1KQ  C09  C11  C  0  1  Y  N  N  -10.732   8.335  17.776  -4.649   0.300   1.291  C09  1KQ  11  
1KQ  C10  C12  C  0  1  Y  N  N   -9.745   7.822  16.955  -4.236  -0.999   1.497  C10  1KQ  12  
1KQ  C15  C13  C  0  1  N  N  N   -6.069   7.235  17.685  -4.669  -3.987  -0.773  C15  1KQ  13  
1KQ  C16  C14  C  0  1  N  N  R   -7.234   7.019  16.725  -3.948  -3.399   0.456  C16  1KQ  14  
1KQ  C18  C15  C  0  1  N  N  N   -6.077   5.428  15.777  -1.788  -3.151   1.542  C18  1KQ  15  
1KQ  C19  C16  C  0  1  N  N  N   -6.987   4.503  15.175  -0.787  -2.445   0.616  C19  1KQ  16  
1KQ  C20  C17  C  0  1  N  N  N   -8.031   5.376  15.611  -1.915  -2.401  -0.424  C20  1KQ  17  
1KQ  C21  C18  C  0  1  N  N  N   -7.506   3.185  15.603   0.389  -3.327   0.205  C21  1KQ  18  
1KQ  C22  C19  C  0  1  N  N  N   -6.699   2.002  15.055   1.199  -2.610  -0.882  C22  1KQ  19  
1KQ  C24  C20  C  0  1  N  N  N   -6.078   3.461  13.138   0.455  -0.366   0.022  C24  1KQ  20  
1KQ  C25  C21  C  0  1  N  N  N   -7.013   4.535  13.696  -0.361  -1.067   1.115  C25  1KQ  21  
1KQ  C26  C22  C  0  1  N  N  N   -6.500   0.918  12.646   2.820  -0.852  -0.368  C26  1KQ  22  
1KQ  C28  C23  C  0  1  N  N  N   -6.203   1.118  11.137   3.154   0.534   0.121  C28  1KQ  23  
1KQ  C29  C24  C  0  1  Y  N  N   -4.702   0.915  10.879   4.646   0.740   0.067  C29  1KQ  24  
1KQ  C31  C25  C  0  1  Y  N  N   -2.756  -0.008  10.732   6.760   0.443   0.393  C31  1KQ  25  
1KQ  C33  C26  C  0  1  Y  N  N   -3.771   1.860  10.456   5.278   1.738  -0.572  C33  1KQ  26  
1KQ  C34  C27  C  0  1  Y  N  N   -1.292   1.613  10.029   7.829   2.168  -0.720  C34  1KQ  27  
1KQ  C35  C28  C  0  1  Y  N  N   -0.366   0.592  10.118   8.962   1.637  -0.295  C35  1KQ  28  
1KQ  C37  C29  C  0  1  N  N  N    1.117   0.561   9.831  10.358   2.139  -0.558  C37  1KQ  29  
1KQ  N03  N1   N  0  1  Y  N  N  -13.604   9.971  21.341  -6.428   4.597  -0.625  N03  1KQ  30  
1KQ  N05  N2   N  0  1  Y  N  N  -12.548   9.726  19.298  -6.092   2.441  -1.363  N05  1KQ  31  
1KQ  N17  N3   N  0  1  N  N  N   -7.136   5.915  16.601  -2.495  -3.551   0.305  N17  1KQ  32  
1KQ  N23  N4   N  0  1  N  N  N   -6.438   2.069  13.573   1.537  -1.262  -0.408  N23  1KQ  33  
1KQ  N30  N5   N  0  1  Y  N  N   -4.044  -0.222  11.045   5.567  -0.038   0.652  N30  1KQ  34  
1KQ  N32  N6   N  0  1  Y  N  N   -2.560   1.241  10.371   6.643   1.561  -0.374  N32  1KQ  35  
1KQ  O27  O1   O  0  1  N  N  N   -6.784  -0.171  13.028   3.707  -1.599  -0.725  O27  1KQ  36  
1KQ  S36  S1   S  0  1  Y  N  N   -1.217  -0.809  10.638   8.495   0.213   0.651  S36  1KQ  37  
1KQ  H1   H1   H  0  1  N  N  N   -8.923   8.710  20.650  -5.639   0.024  -1.937  H1   1KQ  38  
1KQ  H2   H2   H  0  1  N  N  N   -6.143   8.472  19.460  -5.757  -2.810  -2.246  H2   1KQ  39  
1KQ  H3   H3   H  0  1  N  N  N   -6.576   6.751  19.733  -3.976  -2.692  -2.379  H3   1KQ  40  
1KQ  H4   H4   H  0  1  N  N  N  -13.618   9.599  23.881  -4.917   5.880   1.588  H4   1KQ  41  
1KQ  H5   H5   H  0  1  N  N  N  -12.637   8.102  23.729  -6.681   6.095   1.488  H5   1KQ  42  
1KQ  H6   H6   H  0  1  N  N  N  -11.826   9.687  23.965  -5.992   4.911   2.624  H6   1KQ  43  
1KQ  H7   H7   H  0  1  N  N  N  -14.396  10.640  19.543  -6.890   3.947  -2.536  H7   1KQ  44  
1KQ  H8   H8   H  0  1  N  N  N  -10.703   8.404  21.737  -5.129   2.758   1.813  H8   1KQ  45  
1KQ  H9   H9   H  0  1  N  N  N  -11.731   8.475  17.392  -4.577   1.023   2.090  H9   1KQ  46  
1KQ  H10  H10  H  0  1  N  N  N   -9.973   7.571  15.930  -3.841  -1.291   2.459  H10  1KQ  47  
1KQ  H11  H11  H  0  1  N  N  N   -5.428   8.052  17.322  -5.645  -4.383  -0.493  H11  1KQ  48  
1KQ  H12  H12  H  0  1  N  N  N   -5.475   6.313  17.770  -4.061  -4.755  -1.251  H12  1KQ  49  
1KQ  H13  H13  H  0  1  N  N  N   -7.047   7.613  15.818  -4.287  -3.889   1.369  H13  1KQ  50  
1KQ  H14  H14  H  0  1  N  N  N   -5.254   4.954  16.333  -1.361  -3.988   2.095  H14  1KQ  51  
1KQ  H15  H15  H  0  1  N  N  N   -5.667   6.175  15.081  -2.358  -2.469   2.174  H15  1KQ  52  
1KQ  H16  H16  H  0  1  N  N  N   -8.359   6.103  14.853  -2.523  -1.497  -0.375  H16  1KQ  53  
1KQ  H17  H17  H  0  1  N  N  N   -8.908   4.860  16.027  -1.589  -2.641  -1.436  H17  1KQ  54  
1KQ  H18  H18  H  0  1  N  N  N   -7.484   3.142  16.702   1.026  -3.513   1.070  H18  1KQ  55  
1KQ  H19  H19  H  0  1  N  N  N   -8.545   3.090  15.253   0.016  -4.274  -0.184  H19  1KQ  56  
1KQ  H20  H20  H  0  1  N  N  N   -5.730   1.974  15.575   2.115  -3.167  -1.082  H20  1KQ  57  
1KQ  H21  H21  H  0  1  N  N  N   -7.255   1.077  15.266   0.606  -2.539  -1.793  H21  1KQ  58  
1KQ  H22  H22  H  0  1  N  N  N   -6.115   3.503  12.039  -0.191  -0.140  -0.826  H22  1KQ  59  
1KQ  H23  H23  H  0  1  N  N  N   -5.055   3.679  13.479   0.879   0.556   0.418  H23  1KQ  60  
1KQ  H24  H24  H  0  1  N  N  N   -8.038   4.345  13.345  -1.245  -0.474   1.347  H24  1KQ  61  
1KQ  H25  H25  H  0  1  N  N  N   -6.683   5.524  13.346   0.250  -1.177   2.011  H25  1KQ  62  
1KQ  H26  H26  H  0  1  N  N  N   -6.778   0.387  10.550   2.662   1.271  -0.514  H26  1KQ  63  
1KQ  H27  H27  H  0  1  N  N  N   -6.492   2.136  10.838   2.808   0.650   1.148  H27  1KQ  64  
1KQ  H28  H28  H  0  1  N  N  N   -3.973   2.898  10.235   4.812   2.533  -1.136  H28  1KQ  65  
1KQ  H29  H29  H  0  1  N  N  N   -1.036   2.615   9.717   7.834   3.060  -1.329  H29  1KQ  66  
1KQ  H30  H30  H  0  1  N  N  N    1.504  -0.453  10.008  10.647   2.838   0.228  H30  1KQ  67  
1KQ  H31  H31  H  0  1  N  N  N    1.293   0.843   8.782  11.051   1.298  -0.568  H31  1KQ  68  
1KQ  H32  H32  H  0  1  N  N  N    1.633   1.271  10.493  10.387   2.646  -1.523  H32  1KQ  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1KQ  C11  C12  DOUB  Y  N   1  
1KQ  C11  C10  SING  Y  N   2  
1KQ  C11  C16  SING  N  N   3  
1KQ  C12  C13  SING  Y  N   4  
1KQ  C12  C14  SING  N  N   5  
1KQ  C13  C08  DOUB  Y  N   6  
1KQ  C14  C15  SING  N  N   7  
1KQ  C01  C02  SING  N  N   8  
1KQ  C02  C07  DOUB  Y  N   9  
1KQ  C02  N03  SING  Y  N  10  
1KQ  C04  N03  DOUB  Y  N  11  
1KQ  C04  N05  SING  Y  N  12  
1KQ  C06  C07  SING  Y  N  13  
1KQ  C06  C08  SING  N  N  14  
1KQ  C06  N05  DOUB  Y  N  15  
1KQ  C08  C09  SING  Y  N  16  
1KQ  C09  C10  DOUB  Y  N  17  
1KQ  C15  C16  SING  N  N  18  
1KQ  C16  N17  SING  N  N  19  
1KQ  C18  C19  SING  N  N  20  
1KQ  C18  N17  SING  N  N  21  
1KQ  C19  C20  SING  N  N  22  
1KQ  C19  C21  SING  N  N  23  
1KQ  C19  C25  SING  N  N  24  
1KQ  C20  N17  SING  N  N  25  
1KQ  C21  C22  SING  N  N  26  
1KQ  C22  N23  SING  N  N  27  
1KQ  C24  C25  SING  N  N  28  
1KQ  C24  N23  SING  N  N  29  
1KQ  C26  C28  SING  N  N  30  
1KQ  C26  N23  SING  N  N  31  
1KQ  C26  O27  DOUB  N  N  32  
1KQ  C28  C29  SING  N  N  33  
1KQ  C29  C33  DOUB  Y  N  34  
1KQ  C29  N30  SING  Y  N  35  
1KQ  C31  N30  DOUB  Y  N  36  
1KQ  C31  N32  SING  Y  N  37  
1KQ  C31  S36  SING  Y  N  38  
1KQ  C33  N32  SING  Y  N  39  
1KQ  C34  C35  DOUB  Y  N  40  
1KQ  C34  N32  SING  Y  N  41  
1KQ  C35  C37  SING  N  N  42  
1KQ  C35  S36  SING  Y  N  43  
1KQ  C13  H1   SING  N  N  44  
1KQ  C14  H2   SING  N  N  45  
1KQ  C14  H3   SING  N  N  46  
1KQ  C01  H4   SING  N  N  47  
1KQ  C01  H5   SING  N  N  48  
1KQ  C01  H6   SING  N  N  49  
1KQ  C04  H7   SING  N  N  50  
1KQ  C07  H8   SING  N  N  51  
1KQ  C09  H9   SING  N  N  52  
1KQ  C10  H10  SING  N  N  53  
1KQ  C15  H11  SING  N  N  54  
1KQ  C15  H12  SING  N  N  55  
1KQ  C16  H13  SING  N  N  56  
1KQ  C18  H14  SING  N  N  57  
1KQ  C18  H15  SING  N  N  58  
1KQ  C20  H16  SING  N  N  59  
1KQ  C20  H17  SING  N  N  60  
1KQ  C21  H18  SING  N  N  61  
1KQ  C21  H19  SING  N  N  62  
1KQ  C22  H20  SING  N  N  63  
1KQ  C22  H21  SING  N  N  64  
1KQ  C24  H22  SING  N  N  65  
1KQ  C24  H23  SING  N  N  66  
1KQ  C25  H24  SING  N  N  67  
1KQ  C25  H25  SING  N  N  68  
1KQ  C28  H26  SING  N  N  69  
1KQ  C28  H27  SING  N  N  70  
1KQ  C33  H28  SING  N  N  71  
1KQ  C34  H29  SING  N  N  72  
1KQ  C37  H30  SING  N  N  73  
1KQ  C37  H31  SING  N  N  74  
1KQ  C37  H32  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1KQ  InChI             InChI                 1.03   "InChI=1S/C29H32N6OS/c1-19-11-25(31-18-30-19)22-3-5-24-21(12-22)4-6-26(24)35-16-29(17-35)7-9-33(10-8-29)27(36)13-23-15-34-14-20(2)37-28(34)32-23/h3,5,11-12,14-15,18,26H,4,6-10,13,16-17H2,1-2H3/t26-/m1/s1"  
1KQ  InChIKey          InChI                 1.03   ZIUDADZJCKGWKR-AREMUKBSSA-N  
1KQ  SMILES_CANONICAL  CACTVS                3.385  "Cc1sc2nc(CC(=O)N3CCC4(CC3)CN(C4)[C@@H]5CCc6cc(ccc56)c7cc(C)ncn7)cn2c1"  
1KQ  SMILES            CACTVS                3.385  "Cc1sc2nc(CC(=O)N3CCC4(CC3)CN(C4)[CH]5CCc6cc(ccc56)c7cc(C)ncn7)cn2c1"  
1KQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cc(ncn1)c2ccc3c(c2)CC[C@H]3N4CC5(C4)CCN(CC5)C(=O)Cc6cn7cc(sc7n6)C"  
1KQ  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cc(ncn1)c2ccc3c(c2)CCC3N4CC5(C4)CCN(CC5)C(=O)Cc6cn7cc(sc7n6)C"  
#
_pdbx_chem_comp_identifier.comp_id          1KQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1~{R})-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1~{H}-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1KQ  "Create component"  2021-07-02  PDBJ  
1KQ  "Initial release"   2022-01-19  RCSB  
##
