data_18Q
# 
_chem_comp.id                                    18Q 
_chem_comp.name                                  
;2'-deoxy-5-[(thiophen-2-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C15 H18 N3 O9 P S" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-11-07 
_chem_comp.pdbx_modified_date                    2012-11-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        447.357 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     18Q 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HQX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
18Q P      P      P 0 1 N N N 2.409  -6.046  6.582  6.334  1.898  0.168  P      18Q 1  
18Q N1     N1     N 0 1 N N N 1.875  -11.423 7.476  0.352  -1.126 0.145  N1     18Q 2  
18Q C2     C2     C 0 1 N N N 1.490  -12.734 7.871  0.349  -0.738 -1.140 C2     18Q 3  
18Q O2     O2     O 0 1 N N N 1.172  -13.592 7.012  1.395  -0.742 -1.758 O2     18Q 4  
18Q N3     N3     N 0 1 N N N 1.466  -13.077 9.168  -0.775 -0.347 -1.765 N3     18Q 5  
18Q C4     C4     C 0 1 N N N 1.801  -12.199 10.122 -1.954 -0.332 -1.108 C4     18Q 6  
18Q O4     O4     O 0 1 N N N 1.773  -12.545 11.321 -2.974 0.021  -1.669 O4     18Q 7  
18Q C5     C5     C 0 1 N N N 2.205  -10.819 9.734  -1.977 -0.752 0.302  C5     18Q 8  
18Q C6     C6     C 0 1 N N N 2.229  -10.500 8.385  -0.787 -1.143 0.885  C6     18Q 9  
18Q "C1'"  "C1'"  C 0 1 N N R 1.904  -11.075 6.052  1.612  -1.546 0.763  "C1'"  18Q 10 
18Q "C2'"  "C2'"  C 0 1 N N N 0.803  -10.083 5.678  2.130  -2.826 0.078  "C2'"  18Q 11 
18Q C21    C21    C 0 1 N N N 2.610  -9.791  10.751 -3.232 -0.755 1.069  C21    18Q 12 
18Q O22    O22    O 0 1 N N N 2.856  -8.655  10.390 -3.252 -1.202 2.201  O22    18Q 13 
18Q N23    N23    N 0 1 N N N 2.719  -10.132 12.029 -4.360 -0.264 0.519  N23    18Q 14 
18Q C24    C24    C 0 1 N N N 3.128  -9.218  13.082 -5.582 -0.164 1.320  C24    18Q 15 
18Q C25    C25    C 0 1 Y N N 4.632  -9.295  13.113 -6.690 0.413  0.476  C25    18Q 16 
18Q S26    S26    S 0 1 Y N N 5.518  -7.818  12.948 -7.053 2.126  0.314  S26    18Q 17 
18Q C27    C27    C 0 1 Y N N 7.079  -8.546  13.053 -8.384 1.771  -0.780 C27    18Q 18 
18Q C28    C28    C 0 1 Y N N 6.842  -9.910  13.213 -8.479 0.452  -0.955 C28    18Q 19 
18Q C29    C29    C 0 1 Y N N 5.513  -10.336 13.248 -7.541 -0.297 -0.266 C29    18Q 20 
18Q "C3'"  "C3'"  C 0 1 N N S 1.423  -9.389  4.488  3.529  -2.432 -0.455 "C3'"  18Q 21 
18Q "O3'"  "O3'"  O 0 1 N N N 1.194  -10.284 3.397  4.469  -3.489 -0.251 "O3'"  18Q 22 
18Q "C4'"  "C4'"  C 0 1 N N R 2.922  -9.409  4.750  3.878  -1.205 0.424  "C4'"  18Q 23 
18Q "O4'"  "O4'"  O 0 1 N N N 3.155  -10.476 5.684  2.610  -0.527 0.580  "O4'"  18Q 24 
18Q "C5'"  "C5'"  C 0 1 N N N 3.468  -8.078  5.262  4.887  -0.302 -0.287 "C5'"  18Q 25 
18Q "O5'"  "O5'"  O 0 1 N N N 2.664  -7.622  6.344  5.279  0.757  0.589  "O5'"  18Q 26 
18Q OP1    OP1    O 0 1 N N N 1.299  -5.848  7.585  6.636  2.844  1.435  OP1    18Q 27 
18Q OP2    OP2    O 0 1 N N N 2.292  -5.372  5.234  7.592  1.264  -0.286 OP2    18Q 28 
18Q OP3    OP3    O 0 1 N Y N 3.805  -5.607  7.234  5.718  2.784  -1.028 OP3    18Q 29 
18Q HN3    HN3    H 0 1 N N N 1.193  -14.004 9.427  -0.738 -0.074 -2.695 HN3    18Q 30 
18Q H6     H6     H 0 1 N N N 2.531  -9.513  8.066  -0.763 -1.458 1.917  H6     18Q 31 
18Q "H1'"  "H1'"  H 0 1 N N N 1.753  -11.990 5.460  1.461  -1.730 1.826  "H1'"  18Q 32 
18Q "H2'"  "H2'"  H 0 1 N N N -0.128 -10.600 5.403  2.212  -3.639 0.800  "H2'"  18Q 33 
18Q "H2'A" "H2'A" H 0 0 N N N 0.602  -9.376  6.497  1.473  -3.112 -0.743 "H2'A" 18Q 34 
18Q HN23   HN23   H 0 0 N N N 2.507  -11.076 12.283 -4.362 0.024  -0.407 HN23   18Q 35 
18Q H24    H24    H 0 1 N N N 2.799  -8.194  12.852 -5.870 -1.156 1.668  H24    18Q 36 
18Q H24A   H24A   H 0 0 N N N 2.706  -9.530  14.049 -5.403 0.485  2.177  H24A   18Q 37 
18Q H27    H27    H 0 1 N N N 8.037  -8.050  13.005 -9.026 2.508  -1.239 H27    18Q 38 
18Q H28    H28    H 0 1 N N N 7.657  -10.612 13.307 -9.228 0.002  -1.590 H28    18Q 39 
18Q H29    H29    H 0 1 N N N 5.214  -11.367 13.368 -7.503 -1.375 -0.322 H29    18Q 40 
18Q "H3'"  "H3'"  H 0 1 N N N 1.031  -8.373  4.331  3.480  -2.155 -1.508 "H3'"  18Q 41 
18Q "HO3'" "HO3'" H 0 0 N N N 1.559  -9.914  2.602  4.244  -4.310 -0.711 "HO3'" 18Q 42 
18Q "H4'"  "H4'"  H 0 1 N N N 3.430  -9.642  3.803  4.265  -1.523 1.392  "H4'"  18Q 43 
18Q "H5'"  "H5'"  H 0 1 N N N 4.504  -8.214  5.606  5.764  -0.886 -0.566 "H5'"  18Q 44 
18Q "H5'A" "H5'A" H 0 0 N N N 3.446  -7.336  4.450  4.431  0.118  -1.183 "H5'A" 18Q 45 
18Q HOP1   HOP1   H 0 0 N N N 0.629  -5.288  7.210  7.265  3.556  1.254  HOP1   18Q 46 
18Q HOP3   HOP3   H 0 0 N Y N 4.261  -5.021  6.642  4.891  3.230  -0.801 HOP3   18Q 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
18Q OP2   P      DOUB N N 1  
18Q "O5'" P      SING N N 2  
18Q P     OP3    SING N N 3  
18Q P     OP1    SING N N 4  
18Q "C1'" N1     SING N N 5  
18Q N1    C2     SING N N 6  
18Q N1    C6     SING N N 7  
18Q O2    C2     DOUB N N 8  
18Q C2    N3     SING N N 9  
18Q N3    C4     SING N N 10 
18Q N3    HN3    SING N N 11 
18Q C5    C4     SING N N 12 
18Q C4    O4     DOUB N N 13 
18Q C6    C5     DOUB N N 14 
18Q C5    C21    SING N N 15 
18Q C6    H6     SING N N 16 
18Q "C2'" "C1'"  SING N N 17 
18Q "O4'" "C1'"  SING N N 18 
18Q "C1'" "H1'"  SING N N 19 
18Q "C3'" "C2'"  SING N N 20 
18Q "C2'" "H2'"  SING N N 21 
18Q "C2'" "H2'A" SING N N 22 
18Q O22   C21    DOUB N N 23 
18Q C21   N23    SING N N 24 
18Q N23   C24    SING N N 25 
18Q N23   HN23   SING N N 26 
18Q C24   C25    SING N N 27 
18Q C24   H24    SING N N 28 
18Q C24   H24A   SING N N 29 
18Q S26   C25    SING Y N 30 
18Q C25   C29    DOUB Y N 31 
18Q S26   C27    SING Y N 32 
18Q C27   C28    DOUB Y N 33 
18Q C27   H27    SING N N 34 
18Q C28   C29    SING Y N 35 
18Q C28   H28    SING N N 36 
18Q C29   H29    SING N N 37 
18Q "O3'" "C3'"  SING N N 38 
18Q "C3'" "C4'"  SING N N 39 
18Q "C3'" "H3'"  SING N N 40 
18Q "O3'" "HO3'" SING N N 41 
18Q "C4'" "C5'"  SING N N 42 
18Q "C4'" "O4'"  SING N N 43 
18Q "C4'" "H4'"  SING N N 44 
18Q "C5'" "O5'"  SING N N 45 
18Q "C5'" "H5'"  SING N N 46 
18Q "C5'" "H5'A" SING N N 47 
18Q OP1   HOP1   SING N N 48 
18Q OP3   HOP3   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
18Q SMILES           ACDLabs              12.01 "O=C(NCc1sccc1)C2=CN(C(=O)NC2=O)C3OC(COP(=O)(O)O)C(O)C3"                                                                                                                                      
18Q InChI            InChI                1.03  "InChI=1S/C15H18N3O9PS/c19-10-4-12(27-11(10)7-26-28(23,24)25)18-6-9(14(21)17-15(18)22)13(20)16-5-8-2-1-3-29-8/h1-3,6,10-12,19H,4-5,7H2,(H,16,20)(H,17,21,22)(H2,23,24,25)/t10-,11+,12+/m0/s1" 
18Q InChIKey         InChI                1.03  OUBFLYZWEMDJOL-QJPTWQEYSA-N                                                                                                                                                                   
18Q SMILES_CANONICAL CACTVS               3.370 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3sccc3)C(=O)NC2=O"                                                                                                                        
18Q SMILES           CACTVS               3.370 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3sccc3)C(=O)NC2=O"                                                                                                                             
18Q SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(sc1)CNC(=O)C2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                                                       
18Q SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(sc1)CNC(=O)C2=CN(C(=O)NC2=O)C3CC(C(O3)COP(=O)(O)O)O"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
18Q "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-[(thiophen-2-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate)
;
18Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[2,4-bis(oxidanylidene)-5-(thiophen-2-ylmethylcarbamoyl)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
18Q "Create component" 2012-11-07 RCSB 
18Q "Initial release"  2012-11-16 RCSB 
# 
