data_0YQ
# 
_chem_comp.id                                    0YQ 
_chem_comp.name                                  
;2,2'-[(2-{[2-({[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)ethyl]amino}-2-oxoethyl)imino]diacetic acid (non-preferred name)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H23 N5 O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-14 
_chem_comp.pdbx_modified_date                    2012-11-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.391 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0YQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4H1Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0YQ O33 O33 O 0 1 N N N 5.040  10.328 35.232 6.969  -2.259 0.805  O33 0YQ 1  
0YQ C31 C31 C 0 1 N N N 4.981  9.812  36.370 7.067  -1.337 1.580  C31 0YQ 2  
0YQ O32 O32 O 0 1 N N N 4.682  8.604  36.529 7.378  -1.571 2.865  O32 0YQ 3  
0YQ C30 C30 C 0 1 N N N 5.272  10.652 37.604 6.847  0.075  1.103  C30 0YQ 4  
0YQ N25 N25 N 0 1 N N N 5.232  12.101 37.375 6.640  0.074  -0.351 N25 0YQ 5  
0YQ C26 C26 C 0 1 N N N 6.061  12.975 38.188 7.810  -0.476 -1.049 C26 0YQ 6  
0YQ C27 C27 C 0 1 N N N 7.410  12.369 38.529 8.988  0.444  -0.856 C27 0YQ 7  
0YQ O29 O29 O 0 1 N N N 8.222  12.235 37.584 8.866  1.453  -0.203 O29 0YQ 8  
0YQ O28 O28 O 0 1 N N N 7.630  12.034 39.720 10.174 0.141  -1.408 O28 0YQ 9  
0YQ C23 C23 C 0 1 N N N 4.307  12.693 36.396 5.420  -0.662 -0.709 C23 0YQ 10 
0YQ C22 C22 C 0 1 N N N 4.771  13.882 35.559 4.214  0.192  -0.413 C22 0YQ 11 
0YQ O24 O24 O 0 1 N N N 3.946  14.747 35.312 4.353  1.281  0.101  O24 0YQ 12 
0YQ N21 N21 N 0 1 N N N 6.031  13.948 35.101 2.980  -0.255 -0.720 N21 0YQ 13 
0YQ C20 C20 C 0 1 N N N 6.457  14.792 33.984 1.808  0.575  -0.433 C20 0YQ 14 
0YQ C19 C19 C 0 1 N N N 7.360  15.957 34.392 0.541  -0.161 -0.876 C19 0YQ 15 
0YQ N17 N17 N 0 1 N N N 8.559  15.556 35.122 -0.631 0.669  -0.589 N17 0YQ 16 
0YQ C16 C16 C 0 1 N N N 8.684  15.461 36.469 -1.865 0.221  -0.896 C16 0YQ 17 
0YQ O18 O18 O 0 1 N N N 7.806  15.757 37.265 -2.004 -0.868 -1.411 O18 0YQ 18 
0YQ C12 C12 C 0 1 N N S 9.991  14.933 37.029 -3.071 1.075  -0.601 C12 0YQ 19 
0YQ C11 C11 C 0 1 N N S 10.825 15.976 37.808 -3.235 1.266  0.923  C11 0YQ 20 
0YQ O15 O15 O 0 1 N N N 10.757 15.840 39.238 -2.695 2.525  1.331  O15 0YQ 21 
0YQ C10 C10 C 0 1 N N R 12.263 15.679 37.394 -4.764 1.236  1.143  C10 0YQ 22 
0YQ O14 O14 O 0 1 N N N 12.878 14.719 38.284 -5.215 2.475  1.694  O14 0YQ 23 
0YQ O13 O13 O 0 1 N N N 10.802 14.497 35.926 -4.278 0.402  -1.020 O13 0YQ 24 
0YQ C9  C9  C 0 1 N N R 12.121 15.063 36.040 -5.343 1.031  -0.274 C9  0YQ 25 
0YQ N5  N5  N 0 1 N N N 12.292 16.008 34.948 -6.516 0.155  -0.223 N5  0YQ 26 
0YQ C6  C6  C 0 1 N N N 11.269 16.786 34.442 -7.735 0.630  -0.624 C6  0YQ 27 
0YQ C1  C1  C 0 1 N N N 11.552 17.613 33.373 -8.816 -0.177 -0.578 C1  0YQ 28 
0YQ C4  C4  C 0 1 N N N 13.572 16.071 34.388 -6.384 -1.111 0.212  C4  0YQ 29 
0YQ O8  O8  O 0 1 N N N 14.467 15.356 34.917 -5.291 -1.515 0.560  O8  0YQ 30 
0YQ N3  N3  N 0 1 N N N 13.844 16.866 33.342 -7.445 -1.938 0.269  N3  0YQ 31 
0YQ C2  C2  C 0 1 N N N 12.842 17.640 32.822 -8.664 -1.506 -0.112 C2  0YQ 32 
0YQ O7  O7  O 0 1 N N N 13.076 18.415 31.852 -9.625 -2.253 -0.062 O7  0YQ 33 
0YQ H1  H1  H 0 1 N N N 4.525  8.202  35.683 7.514  -2.493 3.123  H1  0YQ 34 
0YQ H2  H2  H 0 1 N N N 4.525  10.405 38.373 5.969  0.492  1.595  H2  0YQ 35 
0YQ H3  H3  H 0 1 N N N 6.275  10.389 37.970 7.721  0.680  1.345  H3  0YQ 36 
0YQ H5  H5  H 0 1 N N N 6.228  13.912 37.636 8.046  -1.459 -0.643 H5  0YQ 37 
0YQ H6  H6  H 0 1 N N N 5.527  13.191 39.125 7.590  -0.565 -2.113 H6  0YQ 38 
0YQ H7  H7  H 0 1 N N N 8.503  11.666 39.790 10.900 0.761  -1.256 H7  0YQ 39 
0YQ H8  H8  H 0 1 N N N 3.416  13.019 36.952 5.441  -0.906 -1.771 H8  0YQ 40 
0YQ H9  H9  H 0 1 N N N 4.028  11.894 35.693 5.366  -1.581 -0.125 H9  0YQ 41 
0YQ H10 H10 H 0 1 N N N 6.723  13.384 35.552 2.869  -1.127 -1.132 H10 0YQ 42 
0YQ H11 H11 H 0 1 N N N 5.559  15.204 33.500 1.757  0.773  0.637  H11 0YQ 43 
0YQ H12 H12 H 0 1 N N N 7.006  14.164 33.266 1.888  1.517  -0.975 H12 0YQ 44 
0YQ H13 H13 H 0 1 N N N 7.672  16.488 33.480 0.592  -0.360 -1.947 H13 0YQ 45 
0YQ H14 H14 H 0 1 N N N 6.778  16.637 35.031 0.461  -1.104 -0.335 H14 0YQ 46 
0YQ H15 H15 H 0 1 N N N 9.366  15.330 34.576 -0.520 1.540  -0.178 H15 0YQ 47 
0YQ H16 H16 H 0 1 N N N 9.777  14.086 37.697 -2.982 2.042  -1.097 H16 0YQ 48 
0YQ H17 H17 H 0 1 N N N 10.543 16.990 37.489 -2.753 0.452  1.464  H17 0YQ 49 
0YQ H18 H18 H 0 1 N N N 11.291 16.511 39.646 -1.748 2.621  1.160  H18 0YQ 50 
0YQ H19 H19 H 0 1 N N N 12.846 16.610 37.340 -5.040 0.407  1.795  H19 0YQ 51 
0YQ H20 H20 H 0 1 N N N 12.972 15.103 39.148 -4.834 2.684  2.558  H20 0YQ 52 
0YQ H21 H21 H 0 1 N N N 12.868 14.262 35.941 -5.604 1.990  -0.720 H21 0YQ 53 
0YQ H22 H22 H 0 1 N N N 10.278 16.749 34.869 -7.832 1.647  -0.976 H22 0YQ 54 
0YQ H23 H23 H 0 1 N N N 10.777 18.242 32.959 -9.784 0.185  -0.891 H23 0YQ 55 
0YQ H24 H24 H 0 1 N N N 14.763 16.893 32.949 -7.332 -2.848 0.585  H24 0YQ 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0YQ O7  C2  DOUB N N 1  
0YQ C2  N3  SING N N 2  
0YQ C2  C1  SING N N 3  
0YQ N3  C4  SING N N 4  
0YQ C1  C6  DOUB N N 5  
0YQ C20 C19 SING N N 6  
0YQ C20 N21 SING N N 7  
0YQ C4  O8  DOUB N N 8  
0YQ C4  N5  SING N N 9  
0YQ C19 N17 SING N N 10 
0YQ C6  N5  SING N N 11 
0YQ N5  C9  SING N N 12 
0YQ N21 C22 SING N N 13 
0YQ N17 C16 SING N N 14 
0YQ O33 C31 DOUB N N 15 
0YQ O24 C22 DOUB N N 16 
0YQ C22 C23 SING N N 17 
0YQ O13 C9  SING N N 18 
0YQ O13 C12 SING N N 19 
0YQ C9  C10 SING N N 20 
0YQ C31 O32 SING N N 21 
0YQ C31 C30 SING N N 22 
0YQ C23 N25 SING N N 23 
0YQ C16 C12 SING N N 24 
0YQ C16 O18 DOUB N N 25 
0YQ C12 C11 SING N N 26 
0YQ N25 C30 SING N N 27 
0YQ N25 C26 SING N N 28 
0YQ C10 C11 SING N N 29 
0YQ C10 O14 SING N N 30 
0YQ O29 C27 DOUB N N 31 
0YQ C11 O15 SING N N 32 
0YQ C26 C27 SING N N 33 
0YQ C27 O28 SING N N 34 
0YQ O32 H1  SING N N 35 
0YQ C30 H2  SING N N 36 
0YQ C30 H3  SING N N 37 
0YQ C26 H5  SING N N 38 
0YQ C26 H6  SING N N 39 
0YQ O28 H7  SING N N 40 
0YQ C23 H8  SING N N 41 
0YQ C23 H9  SING N N 42 
0YQ N21 H10 SING N N 43 
0YQ C20 H11 SING N N 44 
0YQ C20 H12 SING N N 45 
0YQ C19 H13 SING N N 46 
0YQ C19 H14 SING N N 47 
0YQ N17 H15 SING N N 48 
0YQ C12 H16 SING N N 49 
0YQ C11 H17 SING N N 50 
0YQ O15 H18 SING N N 51 
0YQ C10 H19 SING N N 52 
0YQ O14 H20 SING N N 53 
0YQ C9  H21 SING N N 54 
0YQ C6  H22 SING N N 55 
0YQ C1  H23 SING N N 56 
0YQ N3  H24 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0YQ SMILES           ACDLabs              12.01 "O=C(O)CN(CC(=O)O)CC(=O)NCCNC(=O)C2OC(N1C(=O)NC(=O)C=C1)C(O)C2O" 
0YQ InChI            InChI                1.03  
"InChI=1S/C17H23N5O11/c23-8-1-4-22(17(32)20-8)16-13(30)12(29)14(33-16)15(31)19-3-2-18-9(24)5-21(6-10(25)26)7-11(27)28/h1,4,12-14,16,29-30H,2-3,5-7H2,(H,18,24)(H,19,31)(H,25,26)(H,27,28)(H,20,23,32)/t12-,13+,14-,16+/m0/s1" 
0YQ InChIKey         InChI                1.03  YIXIGZCQDCRABL-KNCOVGOOSA-N 
0YQ SMILES_CANONICAL CACTVS               3.370 "O[C@@H]1[C@H](O)[C@H](O[C@H]1N2C=CC(=O)NC2=O)C(=O)NCCNC(=O)CN(CC(O)=O)CC(O)=O" 
0YQ SMILES           CACTVS               3.370 "O[CH]1[CH](O)[CH](O[CH]1N2C=CC(=O)NC2=O)C(=O)NCCNC(=O)CN(CC(O)=O)CC(O)=O" 
0YQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C(=O)NCCNC(=O)CN(CC(=O)O)CC(=O)O)O)O" 
0YQ SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)C(=O)NCCNC(=O)CN(CC(=O)O)CC(=O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0YQ "SYSTEMATIC NAME" ACDLabs              12.01 
;2,2'-[(2-{[2-({[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)ethyl]amino}-2-oxoethyl)imino]diacetic acid (non-preferred name)
;
0YQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[2-[2-[[(2S,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]carbonylamino]ethylamino]-2-oxidanylidene-ethyl]-(2-hydroxy-2-oxoethyl)amino]ethanoic acid"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0YQ "Create component" 2012-09-14 RCSB 
0YQ "Initial release"  2012-11-23 RCSB 
# 
