data_VKP
#

_chem_comp.id                                   VKP
_chem_comp.name                                 "6-(4-amino-4-methylpiperidin-1-yl)-3-[(2,3-dichlorophenyl)sulfanyl]pyrazin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H19 Cl2 N5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-24
_chem_comp.pdbx_modified_date                   2020-09-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       384.327
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JVN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKP  C1   C1   C   0  1  Y  N  N  21.125  41.047  5.418  -0.530  -1.510  -0.038  C1   VKP   1  
VKP  C2   C2   C   0  1  Y  N  N  22.051  42.363  3.792   0.827   0.090  -0.964  C2   VKP   2  
VKP  C3   C3   C   0  1  Y  N  N  23.087  41.412  3.567   1.946  -0.565  -0.470  C3   VKP   3  
VKP  C11  C4   C   0  1  Y  N  N  18.401  40.758  5.973  -3.197  -0.922  -0.419  C11  VKP   4  
VKP  C12  C5   C   0  1  Y  N  N  18.268  40.380  4.619  -3.820  -1.138  -1.642  C12  VKP   5  
VKP  C13  C6   C   0  1  Y  N  N  16.988  40.273  4.033  -4.648  -0.169  -2.175  C13  VKP   6  
VKP  C14  C7   C   0  1  Y  N  N  15.840  40.568  4.795  -4.857   1.016  -1.493  C14  VKP   7  
VKP  C15  C8   C   0  1  Y  N  N  15.986  40.863  6.165  -4.239   1.236  -0.275  C15  VKP   8  
VKP  C16  C9   C   0  1  Y  N  N  17.254  40.984  6.751  -3.413   0.267   0.267  C16  VKP   9  
VKP  N1   N1   N   0  1  Y  N  N  21.064  42.193  4.708  -0.382  -0.395  -0.738  N1   VKP  10  
VKP  N2   N2   N   0  1  Y  N  N  23.130  40.281  4.325   1.806  -1.682   0.237  N2   VKP  11  
VKP  C4   C10  C   0  1  Y  N  N  22.181  40.122  5.265   0.596  -2.172   0.466  C4   VKP  12  
VKP  N3   N3   N   0  1  N  N  N  22.271  38.964  6.030   0.446  -3.340   1.206  N3   VKP  13  
VKP  N4   N4   N   0  1  N  N  N  24.086  41.595  2.565   3.218  -0.049  -0.711  N4   VKP  14  
VKP  C5   C11  C   0  1  N  N  N  25.243  40.692  2.537   4.253  -0.895  -0.102  C5   VKP  15  
VKP  C6   C12  C   0  1  N  N  N  26.486  41.374  3.126   5.636  -0.382  -0.507  C6   VKP  16  
VKP  C7   C13  C   0  1  N  N  N  26.755  42.739  2.439   5.795   1.068  -0.041  C7   VKP  17  
VKP  C8   C14  C   0  1  N  N  N  25.496  43.653  2.412   4.677   1.918  -0.650  C8   VKP  18  
VKP  C9   C15  C   0  1  N  N  N  24.231  42.919  1.919   3.321   1.338  -0.241  C9   VKP  19  
VKP  C10  C16  C   0  1  N  N  N  27.262  42.552  1.008   7.153   1.606  -0.495  C10  VKP  20  
VKP  N5   N5   N   0  1  N  N  N  27.858  43.372  3.115   5.710   1.124   1.425  N5   VKP  21  
VKP  S1   S1   S   0  1  N  N  N  19.984  40.913  6.747  -2.141  -2.156   0.264  S1   VKP  22  
VKP  CL1  CL1  CL  0  0  N  N  N  17.361  41.377  8.437  -2.643   0.539   1.799  CL1  VKP  23  
VKP  CL2  CL2  CL  0  0  N  N  N  14.609  41.220  7.130  -4.505   2.725   0.577  CL2  VKP  24  
VKP  H1   H1   H   0  1  N  N  N  22.051  43.268  3.202   0.945   1.000  -1.535  H1   VKP  25  
VKP  H2   H2   H   0  1  N  N  N  19.149  40.172  4.029  -3.657  -2.062  -2.176  H2   VKP  26  
VKP  H3   H3   H   0  1  N  N  N  16.889  39.966  3.002  -5.132  -0.337  -3.126  H3   VKP  27  
VKP  H4   H4   H   0  1  N  N  N  14.863  40.568  4.336  -5.504   1.772  -1.913  H4   VKP  28  
VKP  H5   H5   H   0  1  N  N  N  23.062  38.428  5.733   1.227  -3.798   1.555  H5   VKP  29  
VKP  H6   H6   H   0  1  N  N  N  22.377  39.209  6.994  -0.440  -3.698   1.373  H6   VKP  30  
VKP  H7   H7   H   0  1  N  N  N  25.012  39.793  3.127   4.157  -0.861   0.984  H7   VKP  31  
VKP  H8   H8   H   0  1  N  N  N  25.450  40.404  1.496   4.131  -1.922  -0.445  H8   VKP  32  
VKP  H9   H9   H   0  1  N  N  N  27.358  40.720  2.979   6.404  -1.000  -0.043  H9   VKP  33  
VKP  H10  H10  H   0  1  N  N  N  26.329  41.539  4.202   5.738  -0.429  -1.592  H10  VKP  34  
VKP  H11  H11  H   0  1  N  N  N  25.693  44.502  1.741   4.759   2.942  -0.288  H11  VKP  35  
VKP  H12  H12  H   0  1  N  N  N  25.311  44.026  3.430   4.764   1.908  -1.737  H12  VKP  36  
VKP  H13  H13  H   0  1  N  N  N  23.348  43.531  2.155   2.523   1.932  -0.685  H13  VKP  37  
VKP  H14  H14  H   0  1  N  N  N  24.300  42.780  0.830   3.229   1.361   0.845  H14  VKP  38  
VKP  H15  H15  H   0  1  N  N  N  28.153  41.907  1.015   7.948   0.998  -0.062  H15  VKP  39  
VKP  H16  H16  H   0  1  N  N  N  26.475  42.083  0.399   7.215   1.564  -1.582  H16  VKP  40  
VKP  H17  H17  H   0  1  N  N  N  27.522  43.531  0.580   7.264   2.638  -0.164  H17  VKP  41  
VKP  H18  H18  H   0  1  N  N  N  27.614  43.535  4.071   5.812   2.071   1.757  H18  VKP  42  
VKP  H19  H19  H   0  1  N  N  N  28.660  42.777  3.073   4.847   0.716   1.753  H19  VKP  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKP  C10  C7   SING  N  N   1  
VKP  C9   C8   SING  N  N   2  
VKP  C9   N4   SING  N  N   3  
VKP  C8   C7   SING  N  N   4  
VKP  C7   N5   SING  N  N   5  
VKP  C7   C6   SING  N  N   6  
VKP  C5   N4   SING  N  N   7  
VKP  C5   C6   SING  N  N   8  
VKP  N4   C3   SING  N  N   9  
VKP  C3   C2   DOUB  Y  N  10  
VKP  C3   N2   SING  Y  N  11  
VKP  C2   N1   SING  Y  N  12  
VKP  C13  C12  DOUB  Y  N  13  
VKP  C13  C14  SING  Y  N  14  
VKP  N2   C4   DOUB  Y  N  15  
VKP  C12  C11  SING  Y  N  16  
VKP  N1   C1   DOUB  Y  N  17  
VKP  C14  C15  DOUB  Y  N  18  
VKP  C4   C1   SING  Y  N  19  
VKP  C4   N3   SING  N  N  20  
VKP  C1   S1   SING  N  N  21  
VKP  C11  S1   SING  N  N  22  
VKP  C11  C16  DOUB  Y  N  23  
VKP  C15  C16  SING  Y  N  24  
VKP  C15  CL2  SING  N  N  25  
VKP  C16  CL1  SING  N  N  26  
VKP  C2   H1   SING  N  N  27  
VKP  C12  H2   SING  N  N  28  
VKP  C13  H3   SING  N  N  29  
VKP  C14  H4   SING  N  N  30  
VKP  N3   H5   SING  N  N  31  
VKP  N3   H6   SING  N  N  32  
VKP  C5   H7   SING  N  N  33  
VKP  C5   H8   SING  N  N  34  
VKP  C6   H9   SING  N  N  35  
VKP  C6   H10  SING  N  N  36  
VKP  C8   H11  SING  N  N  37  
VKP  C8   H12  SING  N  N  38  
VKP  C9   H13  SING  N  N  39  
VKP  C9   H14  SING  N  N  40  
VKP  C10  H15  SING  N  N  41  
VKP  C10  H16  SING  N  N  42  
VKP  C10  H17  SING  N  N  43  
VKP  N5   H18  SING  N  N  44  
VKP  N5   H19  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKP  SMILES            ACDLabs               12.01  "c2(Sc1c(c(ccc1)Cl)Cl)ncc(nc2N)N3CCC(N)(CC3)C"  
VKP  InChI             InChI                 1.03   "InChI=1S/C16H19Cl2N5S/c1-16(20)5-7-23(8-6-16)12-9-21-15(14(19)22-12)24-11-4-2-3-10(17)13(11)18/h2-4,9H,5-8,20H2,1H3,(H2,19,22)"  
VKP  InChIKey          InChI                 1.03   VPEZYDNNURIHBQ-UHFFFAOYSA-N  
VKP  SMILES_CANONICAL  CACTVS                3.385  "CC1(N)CCN(CC1)c2cnc(Sc3cccc(Cl)c3Cl)c(N)n2"  
VKP  SMILES            CACTVS                3.385  "CC1(N)CCN(CC1)c2cnc(Sc3cccc(Cl)c3Cl)c(N)n2"  
VKP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1(CCN(CC1)c2cnc(c(n2)N)Sc3cccc(c3Cl)Cl)N"  
VKP  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CCN(CC1)c2cnc(c(n2)N)Sc3cccc(c3Cl)Cl)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKP  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-(4-amino-4-methylpiperidin-1-yl)-3-[(2,3-dichlorophenyl)sulfanyl]pyrazin-2-amine"  
VKP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]sulfanyl-pyrazin-2-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKP  "Create component"  2020-08-24  RCSB  
VKP  "Initial release"   2020-09-23  RCSB  
##
