data_LYP
# 
_chem_comp.id                                    LYP 
_chem_comp.name                                  N~6~-METHYL-N~6~-PROPYL-L-LYSINE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H22 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-03-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        202.294 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LYP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LYP N    N    N 0 1 N N N Y Y N 64.369 47.361 36.048 3.328  1.685  0.554  N    LYP 1  
LYP CA   CA   C 0 1 N N S Y N N 65.638 47.968 35.597 3.240  0.219  0.587  CA   LYP 2  
LYP CB   CB   C 0 1 N N N N N N 65.771 49.453 35.976 2.002  -0.235 -0.188 CB   LYP 3  
LYP CG   CG   C 0 1 N N N N N N 64.964 50.346 35.052 0.743  0.262  0.526  CG   LYP 4  
LYP CD   CD   C 0 1 N N N N N N 65.182 51.829 35.294 -0.495 -0.192 -0.249 CD   LYP 5  
LYP CE   CE   C 0 1 N N N N N N 64.596 52.623 34.119 -1.754 0.305  0.465  CE   LYP 6  
LYP NZ   NZ   N 0 1 N N N N N N 64.513 54.113 34.280 -2.944 -0.131 -0.279 NZ   LYP 7  
LYP CM   CM   C 0 1 N N N N N N 63.935 54.707 33.041 -3.009 0.517  -1.595 CM   LYP 8  
LYP C    C    C 0 1 N N N Y N Y 66.896 47.149 35.925 4.474  -0.372 -0.045 C    LYP 9  
LYP O    O    O 0 1 N N N Y N Y 67.514 46.608 35.004 5.153  0.297  -0.788 O    LYP 10 
LYP CCA  CCA  C 0 1 N N N N N N 66.589 56.739 35.862 -6.628 -0.305 0.610  CCA  LYP 11 
LYP CCC  CCC  C 0 1 N N N N N N 65.780 56.198 34.668 -5.352 -0.566 -0.193 CCC  LYP 12 
LYP CCD  CCD  C 0 1 N N N N N N 65.870 54.675 34.560 -4.168 0.119  0.492  CCD  LYP 13 
LYP OXT  OXT  O 0 1 N Y N Y N Y 67.261 47.038 37.206 4.818  -1.643 0.216  OXT  LYP 14 
LYP H    HN1  H 0 1 N N N Y Y N 64.342 46.400 35.773 3.399  2.022  -0.395 HN1  LYP 15 
LYP H2   HN2  H 0 1 N Y N Y Y N 64.305 47.425 37.044 2.544  2.105  1.029  HN2  LYP 16 
LYP HA   HA   H 0 1 N N N Y N N 65.584 47.966 34.498 3.166  -0.117 1.621  HA   LYP 17 
LYP HBC1 HBC1 H 0 0 N N N N N N 65.412 49.591 37.007 2.034  0.175  -1.197 HBC1 LYP 18 
LYP HBC2 HBC2 H 0 0 N N N N N N 66.830 49.742 35.915 1.985  -1.324 -0.239 HBC2 LYP 19 
LYP HGC1 HGC1 H 0 0 N N N N N N 65.247 50.118 34.014 0.711  -0.148 1.535  HGC1 LYP 20 
LYP HGC2 HGC2 H 0 0 N N N N N N 63.897 50.123 35.198 0.761  1.351  0.577  HGC2 LYP 21 
LYP HDC1 HDC1 H 0 0 N N N N N N 64.680 52.127 36.226 -0.464 0.218  -1.258 HDC1 LYP 22 
LYP HDC2 HDC2 H 0 0 N N N N N N 66.260 52.034 35.376 -0.513 -1.281 -0.300 HDC2 LYP 23 
LYP HEC1 HEC1 H 0 0 N N N N N N 65.219 52.418 33.236 -1.786 -0.105 1.474  HEC1 LYP 24 
LYP HEC2 HEC2 H 0 0 N N N N N N 63.576 52.251 33.942 -1.737 1.394  0.516  HEC2 LYP 25 
LYP HMC1 HMC1 H 0 0 N N N N N N 63.871 55.799 33.153 -2.121 0.258  -2.173 HMC1 LYP 26 
LYP HMC2 HMC2 H 0 0 N N N N N N 64.578 54.463 32.183 -3.898 0.177  -2.125 HMC2 LYP 27 
LYP HMC3 HMC3 H 0 0 N N N N N N 62.928 54.297 32.873 -3.055 1.599  -1.466 HMC3 LYP 28 
LYP HCD1 HCD1 H 0 0 N N N N N N 66.249 54.262 35.506 -4.051 -0.280 1.500  HCD1 LYP 29 
LYP HCD2 HCD2 H 0 0 N N N N N N 66.554 54.405 33.742 -4.351 1.192  0.546  HCD2 LYP 30 
LYP HXT  HOT  H 0 1 N Y N Y N Y 68.039 46.496 37.268 5.617  -1.979 -0.213 HOT  LYP 31 
LYP HCA1 HCA1 H 0 0 N N N N N N 66.497 57.834 35.902 -6.810 0.768  0.664  HCA1 LYP 32 
LYP HCA2 HCA2 H 0 0 N N N N N N 66.201 56.304 36.795 -7.471 -0.794 0.122  HCA2 LYP 33 
LYP HCA3 HCA3 H 0 0 N Y N N N N 67.647 56.464 35.742 -6.510 -0.704 1.618  HCA3 LYP 34 
LYP HCC1 HCC1 H 0 0 N N N N N N 64.725 56.484 34.795 -5.169 -1.639 -0.247 HCC1 LYP 35 
LYP HCC2 HCC2 H 0 0 N N N N N N 66.172 56.644 33.742 -5.469 -0.167 -1.201 HCC2 LYP 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LYP N   CA   SING N N 1  
LYP CA  CB   SING N N 2  
LYP CB  CG   SING N N 3  
LYP CG  CD   SING N N 4  
LYP CD  CE   SING N N 5  
LYP CE  NZ   SING N N 6  
LYP NZ  CM   SING N N 7  
LYP CA  C    SING N N 8  
LYP C   O    DOUB N N 9  
LYP CCA CCC  SING N N 10 
LYP NZ  CCD  SING N N 11 
LYP CCC CCD  SING N N 12 
LYP C   OXT  SING N N 13 
LYP N   H    SING N N 14 
LYP N   H2   SING N N 15 
LYP CA  HA   SING N N 16 
LYP CB  HBC1 SING N N 17 
LYP CB  HBC2 SING N N 18 
LYP CG  HGC1 SING N N 19 
LYP CG  HGC2 SING N N 20 
LYP CD  HDC1 SING N N 21 
LYP CD  HDC2 SING N N 22 
LYP CE  HEC1 SING N N 23 
LYP CE  HEC2 SING N N 24 
LYP CM  HMC1 SING N N 25 
LYP CM  HMC2 SING N N 26 
LYP CM  HMC3 SING N N 27 
LYP CCD HCD1 SING N N 28 
LYP CCD HCD2 SING N N 29 
LYP OXT HXT  SING N N 30 
LYP CCA HCA1 SING N N 31 
LYP CCA HCA2 SING N N 32 
LYP CCA HCA3 SING N N 33 
LYP CCC HCC1 SING N N 34 
LYP CCC HCC2 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LYP SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCCN(CCC)C"                                                                        
LYP InChI            InChI                1.03  "InChI=1S/C10H22N2O2/c1-3-7-12(2)8-5-4-6-9(11)10(13)14/h9H,3-8,11H2,1-2H3,(H,13,14)/t9-/m0/s1" 
LYP InChIKey         InChI                1.03  RBCPTYNDCRPSKM-VIFPVBQESA-N                                                                    
LYP SMILES_CANONICAL CACTVS               3.370 "CCCN(C)CCCC[C@H](N)C(O)=O"                                                                    
LYP SMILES           CACTVS               3.370 "CCCN(C)CCCC[CH](N)C(O)=O"                                                                     
LYP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCN(C)CCCCC(C(=O)O)N"                                                                        
LYP SMILES           "OpenEye OEToolkits" 1.7.6 "CCCN(C)CCCCC(C(=O)O)N"                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LYP "SYSTEMATIC NAME" ACDLabs              12.01 N~6~-methyl-N~6~-propyl-L-lysine                
LYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-azanyl-6-[methyl(propyl)amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LYP "Create component"      2007-03-28 RCSB 
LYP "Modify descriptor"     2011-06-04 RCSB 
LYP "Modify parent residue" 2012-10-28 RCSB 
LYP "Modify backbone"       2023-11-03 PDBE 
LYP "Modify PCM"            2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LYP 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
