data_A1LVP
# 
_chem_comp.id                                    A1LVP 
_chem_comp.name                                  "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-prop-2-enyl-3~{H}-1,4-benzodiazepine-2,5-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H22 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-27 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        382.410 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1LVP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XII 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1LVP C13 C1  C 0 1 N N N N N N 3.157  -3.316 82.427 -2.309 -1.040 0.200  C13 A1LVP 1  
A1LVP C17 C2  C 0 1 N N N N N N 4.702  -6.363 84.473 -5.746 -0.234 -1.378 C17 A1LVP 2  
A1LVP C20 C3  C 0 1 N N N N N N 5.314  -4.717 82.009 -4.137 0.576  0.916  C20 A1LVP 3  
A1LVP C24 C4  C 0 1 N N N N N N -4.111 -3.687 83.657 4.928  -1.113 0.477  C24 A1LVP 4  
A1LVP C26 C5  C 0 1 N N N N N N -0.758 -0.121 86.975 2.103  3.597  0.319  C26 A1LVP 5  
A1LVP C28 C6  C 0 1 N N N N N N -4.203 -2.791 81.328 6.103  -2.729 -0.927 C28 A1LVP 6  
A1LVP C01 C7  C 0 1 Y N N N N N 2.037  -2.839 83.319 -1.094 -0.207 0.111  C01 A1LVP 7  
A1LVP C02 C8  C 0 1 Y N N N N N 2.400  -1.829 84.398 -1.185 1.129  -0.300 C02 A1LVP 8  
A1LVP C03 C9  C 0 1 Y N N N N N 1.241  -1.315 85.246 -0.054 1.901  -0.378 C03 A1LVP 9  
A1LVP C04 C10 C 0 1 Y N N N N N -0.194 -1.803 84.996 1.202  1.374  -0.053 C04 A1LVP 10 
A1LVP C05 C11 C 0 1 Y N N N N N -0.596 -2.786 83.933 1.304  0.041  0.352  C05 A1LVP 11 
A1LVP C06 C12 C 0 1 Y N N N N N 0.618  -3.310 83.061 0.146  -0.743 0.440  C06 A1LVP 12 
A1LVP C08 C13 C 0 1 N N N N N N -2.974 -1.318 86.075 3.480  1.900  -0.638 C08 A1LVP 13 
A1LVP C09 C14 C 0 1 N N N N N N -3.585 -2.315 85.137 3.802  0.506  -1.102 C09 A1LVP 14 
A1LVP C11 C15 C 0 1 N N N N N N -1.836 -3.199 83.743 2.580  -0.596 0.698  C11 A1LVP 15 
A1LVP C12 C16 C 0 1 N N N N N N 0.545  -4.314 81.896 0.245  -2.178 0.889  C12 A1LVP 16 
A1LVP C14 C17 C 0 1 N N N N N N 4.039  -4.485 82.783 -3.633 -0.435 -0.016 C14 A1LVP 17 
A1LVP C16 C18 C 0 1 N N N N N N 3.638  -5.450 83.879 -4.394 -0.820 -1.094 C16 A1LVP 18 
A1LVP C18 C19 C 0 1 N N N N N N 6.125  -5.987 84.062 -6.360 0.368  -0.115 C18 A1LVP 19 
A1LVP C19 C20 C 0 1 N N N N N N 6.308  -5.721 82.565 -5.367 1.359  0.507  C19 A1LVP 20 
A1LVP C27 C21 C 0 1 N N N N N N -4.804 -2.989 82.484 5.023  -2.431 -0.248 C27 A1LVP 21 
A1LVP N07 N1  N 0 1 N N N N N N -1.304 -1.083 86.041 2.285  2.222  -0.152 N07 A1LVP 22 
A1LVP N10 N2  N 0 1 N N N N N N -3.052 -2.907 84.278 3.723  -0.402 0.043  N10 A1LVP 23 
A1LVP O15 O1  O 0 1 N N N N N N 3.333  -2.688 81.425 -2.216 -2.227 0.448  O15 A1LVP 24 
A1LVP O21 O2  O 0 1 N N N N N N 2.320  -5.546 84.304 -3.911 -1.756 -1.924 O21 A1LVP 25 
A1LVP O22 O3  O 0 1 N N N N N N 5.566  -4.119 81.013 -3.588 0.778  1.980  O22 A1LVP 26 
A1LVP O23 O4  O 0 1 N N N N N N -1.963 -3.979 82.879 2.595  -1.354 1.650  O23 A1LVP 27 
A1LVP O25 O5  O 0 1 N N N N N N -3.640 -0.727 86.858 4.336  2.757  -0.711 O25 A1LVP 28 
A1LVP H1  H1  H 0 1 N N N N N N 4.631  -6.313 85.570 -5.647 0.546  -2.133 H1  A1LVP 29 
A1LVP H2  H2  H 0 1 N N N N N N 4.504  -7.392 84.139 -6.403 -1.017 -1.757 H2  A1LVP 30 
A1LVP H3  H3  H 0 1 N N N N N N -4.869 -3.909 84.422 4.877  -1.292 1.551  H3  A1LVP 31 
A1LVP H4  H4  H 0 1 N N N N N N -3.675 -4.628 83.289 5.807  -0.510 0.251  H4  A1LVP 32 
A1LVP H5  H5  H 0 1 N N N N N N -1.567 0.282  87.602 2.364  3.657  1.375  H5  A1LVP 33 
A1LVP H6  H6  H 0 1 N N N N N N -0.010 -0.614 87.613 2.747  4.265  -0.253 H6  A1LVP 34 
A1LVP H7  H7  H 0 1 N N N N N N -0.282 0.700  86.419 1.063  3.892  0.184  H7  A1LVP 35 
A1LVP H8  H8  H 0 1 N N N N N N -3.186 -3.126 81.184 6.171  -3.673 -1.446 H8  A1LVP 36 
A1LVP H9  H9  H 0 1 N N N N N N -4.727 -2.294 80.525 6.926  -2.030 -0.966 H9  A1LVP 37 
A1LVP H10 H10 H 0 1 N N N N N N 3.416  -1.497 84.554 -2.146 1.551  -0.555 H10 A1LVP 38 
A1LVP H11 H11 H 0 1 N N N N N N 1.432  -0.599 86.032 -0.133 2.931  -0.696 H11 A1LVP 39 
A1LVP H12 H12 H 0 1 N N N N N N -4.399 -1.769 84.638 3.084  0.199  -1.862 H12 A1LVP 40 
A1LVP H13 H13 H 0 1 N N N N N N -4.011 -3.091 85.790 4.809  0.483  -1.520 H13 A1LVP 41 
A1LVP H14 H14 H 0 1 N N N N N N 0.667  -5.336 82.284 0.271  -2.831 0.016  H14 A1LVP 42 
A1LVP H15 H15 H 0 1 N N N N N N -0.431 -4.226 81.396 1.156  -2.315 1.472  H15 A1LVP 43 
A1LVP H16 H16 H 0 1 N N N N N N 1.347  -4.098 81.175 -0.620 -2.428 1.503  H16 A1LVP 44 
A1LVP H19 H19 H 0 1 N N N N N N 6.794  -6.812 84.348 -7.282 0.889  -0.370 H19 A1LVP 45 
A1LVP H20 H20 H 0 1 N N N N N N 6.411  -5.077 84.609 -6.576 -0.427 0.599  H20 A1LVP 46 
A1LVP H21 H21 H 0 1 N N N N N N 6.185  -6.671 82.024 -5.813 1.831  1.382  H21 A1LVP 47 
A1LVP H22 H22 H 0 1 N N N N N N 7.324  -5.334 82.401 -5.095 2.119  -0.226 H22 A1LVP 48 
A1LVP H23 H23 H 0 1 N N N N N N -5.821 -2.647 82.608 4.200  -3.129 -0.208 H23 A1LVP 49 
A1LVP H24 H24 H 0 1 N N N N N N 2.256  -6.197 84.993 -3.013 -2.073 -1.753 H24 A1LVP 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1LVP O22 C20 DOUB N N 1  
A1LVP C28 C27 DOUB N N 2  
A1LVP O15 C13 DOUB N N 3  
A1LVP C12 C06 SING N N 4  
A1LVP C20 C19 SING N N 5  
A1LVP C20 C14 SING N N 6  
A1LVP C13 C14 SING N N 7  
A1LVP C13 C01 SING N N 8  
A1LVP C27 C24 SING N N 9  
A1LVP C19 C18 SING N N 10 
A1LVP C14 C16 DOUB N N 11 
A1LVP O23 C11 DOUB N N 12 
A1LVP C06 C01 DOUB Y N 13 
A1LVP C06 C05 SING Y N 14 
A1LVP C01 C02 SING Y N 15 
A1LVP C24 N10 SING N N 16 
A1LVP C11 C05 SING N N 17 
A1LVP C11 N10 SING N N 18 
A1LVP C16 O21 SING N N 19 
A1LVP C16 C17 SING N N 20 
A1LVP C05 C04 DOUB Y N 21 
A1LVP C18 C17 SING N N 22 
A1LVP N10 C09 SING N N 23 
A1LVP C02 C03 DOUB Y N 24 
A1LVP C04 C03 SING Y N 25 
A1LVP C04 N07 SING N N 26 
A1LVP C09 C08 SING N N 27 
A1LVP N07 C08 SING N N 28 
A1LVP N07 C26 SING N N 29 
A1LVP C08 O25 DOUB N N 30 
A1LVP C17 H1  SING N N 31 
A1LVP C17 H2  SING N N 32 
A1LVP C24 H3  SING N N 33 
A1LVP C24 H4  SING N N 34 
A1LVP C26 H5  SING N N 35 
A1LVP C26 H6  SING N N 36 
A1LVP C26 H7  SING N N 37 
A1LVP C28 H8  SING N N 38 
A1LVP C28 H9  SING N N 39 
A1LVP C02 H10 SING N N 40 
A1LVP C03 H11 SING N N 41 
A1LVP C09 H12 SING N N 42 
A1LVP C09 H13 SING N N 43 
A1LVP C12 H14 SING N N 44 
A1LVP C12 H15 SING N N 45 
A1LVP C12 H16 SING N N 46 
A1LVP C18 H19 SING N N 47 
A1LVP C18 H20 SING N N 48 
A1LVP C19 H21 SING N N 49 
A1LVP C19 H22 SING N N 50 
A1LVP C27 H23 SING N N 51 
A1LVP O21 H24 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1LVP InChI            InChI                1.06  "InChI=1S/C21H22N2O5/c1-4-10-23-11-17(26)22(3)14-9-8-13(12(2)18(14)21(23)28)20(27)19-15(24)6-5-7-16(19)25/h4,8-9,24H,1,5-7,10-11H2,2-3H3" 
A1LVP InChIKey         InChI                1.06  NIWCIBOQMVCWFM-UHFFFAOYSA-N                                                                                                               
A1LVP SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)CN(CC=C)C(=O)c2c(C)c(ccc12)C(=O)C3=C(O)CCCC3=O"                                                                                  
A1LVP SMILES           CACTVS               3.385 "CN1C(=O)CN(CC=C)C(=O)c2c(C)c(ccc12)C(=O)C3=C(O)CCCC3=O"                                                                                  
A1LVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)CC=C)C(=O)C3=C(CCCC3=O)O"                                                                                    
A1LVP SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)CC=C)C(=O)C3=C(CCCC3=O)O"                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           A1LVP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-prop-2-enyl-3~{H}-1,4-benzodiazepine-2,5-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1LVP "Create component"    2023-12-27 PDBJ 
A1LVP "Modify formula"      2024-04-22 PDBJ 
A1LVP "Modify linking type" 2024-04-22 PDBJ 
A1LVP "Modify name"         2024-04-22 PDBJ 
A1LVP "Initial release"     2024-12-25 RCSB 
# 
