data_A1IDP
# 
_chem_comp.id                                    A1IDP 
_chem_comp.name                                  "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-[3-cyano-4-(trifluoromethyl)phenyl]ethyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 F3 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.477 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IDP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FKY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IDP C1  C1  C 0 1 N N S N N N -11.434 6.873  11.002 1.385  -1.985 -1.269 C1  A1IDP 1  
A1IDP C2  C2  C 0 1 N N N N N N -13.410 8.257  10.578 0.698  -3.606 0.415  C2  A1IDP 2  
A1IDP C3  C3  C 0 1 N N N N N N -14.024 9.558  10.132 1.829  -4.497 -0.031 C3  A1IDP 3  
A1IDP C7  C4  C 0 1 Y N N N N N -10.229 11.213 11.985 -2.796 -0.759 -0.431 C7  A1IDP 4  
A1IDP C8  C5  C 0 1 Y N N N N N -9.626  11.656 10.816 -2.846 -0.127 0.802  C8  A1IDP 5  
A1IDP C9  C6  C 0 1 N N R N N N -8.494  13.544 11.875 -5.022 0.635  0.216  C9  A1IDP 6  
A1IDP C10 C7  C 0 1 N N N N N N -9.643  14.528 12.051 -4.803 1.709  -0.878 C10 A1IDP 7  
A1IDP C11 C8  C 0 1 N N N N N N -9.362  15.546 10.942 -6.244 1.996  -1.368 C11 A1IDP 8  
A1IDP C12 C9  C 0 1 N N R N N N -7.852  15.763 11.039 -7.098 1.939  -0.084 C12 A1IDP 9  
A1IDP C13 C10 C 0 1 N N N N N N -7.296  14.397 11.465 -6.321 1.074  0.923  C13 A1IDP 10 
A1IDP C14 C11 C 0 1 Y N N N N N -9.832  10.978 9.626  -1.794 -0.264 1.696  C14 A1IDP 11 
A1IDP C15 C12 C 0 1 Y N N N N N -10.641 9.858  9.606  -0.696 -1.029 1.358  C15 A1IDP 12 
A1IDP C16 C13 C 0 1 Y N N N N N -11.058 6.670  12.465 2.050  -0.704 -0.835 C16 A1IDP 13 
A1IDP C19 C14 C 0 1 Y N N N N N -10.357 6.235  15.139 3.257  1.662  -0.032 C19 A1IDP 14 
A1IDP C20 C15 C 0 1 Y N N N N N -9.347  6.431  14.185 4.041  0.572  -0.414 C20 A1IDP 15 
A1IDP C21 C16 C 0 1 Y N N N N N -9.727  6.644  12.860 3.426  -0.615 -0.816 C21 A1IDP 16 
A1IDP C22 C17 C 0 1 N N N N N N -7.949  6.425  14.530 5.469  0.671  -0.392 C22 A1IDP 17 
A1IDP F2  F1  F 0 1 N N N N N N -9.374  4.823  16.756 2.925  3.884  0.734  F2  A1IDP 18 
A1IDP C23 C18 C 0 1 N N N N N N -10.002 5.981  16.584 3.911  2.948  0.404  C23 A1IDP 19 
A1IDP F   F2  F 0 1 N N N N N N -11.046 6.029  17.393 4.717  2.705  1.522  F   A1IDP 20 
A1IDP F1  F3  F 0 1 N N N N N N -9.197  6.890  17.085 4.698  3.447  -0.639 F1  A1IDP 21 
A1IDP C18 C19 C 0 1 Y N N N N N -11.692 6.251  14.751 1.881  1.562  -0.061 C18 A1IDP 22 
A1IDP C17 C20 C 0 1 Y N N N N N -12.034 6.470  13.428 1.278  0.382  -0.461 C17 A1IDP 23 
A1IDP N2  N1  N 0 1 N N N N N N -6.829  6.422  14.765 6.602  0.750  -0.375 N2  A1IDP 24 
A1IDP C   C21 C 0 1 N N N N N N -10.305 6.591  10.014 0.600  -1.739 -2.560 C   A1IDP 25 
A1IDP N   N2  N 0 1 N N N N N N -12.058 8.212  10.766 0.469  -2.440 -0.220 N   A1IDP 26 
A1IDP C4  C22 C 0 1 N N N N N N -14.782 10.211 11.239 1.794  -5.803 0.766  C4  A1IDP 27 
A1IDP O   O1  O 0 1 N N N N N N -14.117 7.284  10.786 -0.005 -3.939 1.345  O   A1IDP 28 
A1IDP C5  C23 C 0 1 Y N N N N N -11.248 9.403  10.777 -0.645 -1.662 0.123  C5  A1IDP 29 
A1IDP C6  C24 C 0 1 Y N N N N N -11.040 10.094 11.962 -1.700 -1.529 -0.769 C6  A1IDP 30 
A1IDP O1  O2  O 0 1 N N N N N N -8.791  12.748 10.695 -3.927 0.628  1.136  O1  A1IDP 31 
A1IDP N1  N3  N 0 1 N N N N N N -7.455  16.782 12.019 -8.401 1.326  -0.374 N1  A1IDP 32 
A1IDP H1  H1  H 0 1 N N N N N N -12.215 6.129  10.786 2.144  -2.747 -1.445 H1  A1IDP 33 
A1IDP H2  H2  H 0 1 N N N N N N -13.224 10.235 9.798  1.722  -4.717 -1.093 H2  A1IDP 34 
A1IDP H3  H3  H 0 1 N N N N N N -14.711 9.361  9.296  2.780  -3.992 0.141  H3  A1IDP 35 
A1IDP H4  H4  H 0 1 N N N N N N -10.065 11.742 12.912 -3.615 -0.652 -1.127 H4  A1IDP 36 
A1IDP H5  H5  H 0 1 N N N N N N -8.302  12.947 12.779 -5.147 -0.350 -0.234 H5  A1IDP 37 
A1IDP H6  H6  H 0 1 N N N N N N -9.616  15.001 13.044 -4.353 2.606  -0.454 H6  A1IDP 38 
A1IDP H7  H7  H 0 1 N N N N N N -10.616 14.036 11.905 -4.188 1.316  -1.688 H7  A1IDP 39 
A1IDP H8  H8  H 0 1 N N N N N N -9.907  16.484 11.121 -6.303 2.985  -1.822 H8  A1IDP 40 
A1IDP H9  H9  H 0 1 N N N N N N -9.640  15.143 9.957  -6.567 1.231  -2.075 H9  A1IDP 41 
A1IDP H10 H10 H 0 1 N N N N N N -7.457  16.020 10.045 -7.238 2.943  0.316  H10 A1IDP 42 
A1IDP H11 H11 H 0 1 N N N N N N -6.765  13.925 10.625 -6.911 0.199  1.197  H11 A1IDP 43 
A1IDP H12 H12 H 0 1 N N N N N N -6.607  14.516 12.314 -6.083 1.658  1.812  H12 A1IDP 44 
A1IDP H13 H13 H 0 1 N N N N N N -9.362  11.323 8.717  -1.834 0.229  2.656  H13 A1IDP 45 
A1IDP H14 H14 H 0 1 N N N N N N -10.805 9.331  8.678  0.123  -1.135 2.054  H14 A1IDP 46 
A1IDP H15 H15 H 0 1 N N N N N N -8.959  6.794  12.115 4.027  -1.463 -1.112 H15 A1IDP 47 
A1IDP H16 H16 H 0 1 N N N N N N -12.467 6.092  15.486 1.273  2.404  0.234  H16 A1IDP 48 
A1IDP H17 H17 H 0 1 N N N N N N -13.075 6.485  13.142 0.201  0.309  -0.482 H17 A1IDP 49 
A1IDP H18 H18 H 0 1 N N N N N N -9.875  5.600  10.221 0.025  -2.631 -2.811 H18 A1IDP 50 
A1IDP H19 H19 H 0 1 N N N N N N -10.702 6.611  8.988  -0.078 -0.898 -2.418 H19 A1IDP 51 
A1IDP H20 H20 H 0 1 N N N N N N -9.525  7.359  10.120 1.294  -1.515 -3.370 H20 A1IDP 52 
A1IDP H21 H21 H 0 1 N N N N N N -15.216 11.156 10.880 0.844  -6.308 0.593  H21 A1IDP 53 
A1IDP H22 H22 H 0 1 N N N N N N -15.588 9.542  11.576 2.612  -6.447 0.443  H22 A1IDP 54 
A1IDP H23 H23 H 0 1 N N N N N N -14.101 10.416 12.078 1.901  -5.583 1.828  H23 A1IDP 55 
A1IDP H24 H24 H 0 1 N N N N N N -11.514 9.756  12.871 -1.661 -2.021 -1.729 H24 A1IDP 56 
A1IDP H25 H25 H 0 1 N N N N N N -6.459  16.868 12.026 -8.915 1.871  -1.051 H25 A1IDP 57 
A1IDP H26 H26 H 0 1 N N N N N N -7.863  17.660 11.770 -8.292 0.373  -0.685 H26 A1IDP 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IDP C15 C14 DOUB Y N 1  
A1IDP C15 C5  SING Y N 2  
A1IDP C14 C8  SING Y N 3  
A1IDP C   C1  SING N N 4  
A1IDP C3  C2  SING N N 5  
A1IDP C3  C4  SING N N 6  
A1IDP C2  N   SING N N 7  
A1IDP C2  O   DOUB N N 8  
A1IDP O1  C8  SING N N 9  
A1IDP O1  C9  SING N N 10 
A1IDP N   C5  SING N N 11 
A1IDP N   C1  SING N N 12 
A1IDP C5  C6  DOUB Y N 13 
A1IDP C8  C7  DOUB Y N 14 
A1IDP C11 C12 SING N N 15 
A1IDP C11 C10 SING N N 16 
A1IDP C1  C16 SING N N 17 
A1IDP C12 C13 SING N N 18 
A1IDP C12 N1  SING N N 19 
A1IDP C13 C9  SING N N 20 
A1IDP C9  C10 SING N N 21 
A1IDP C6  C7  SING Y N 22 
A1IDP C16 C21 DOUB Y N 23 
A1IDP C16 C17 SING Y N 24 
A1IDP C21 C20 SING Y N 25 
A1IDP C17 C18 DOUB Y N 26 
A1IDP C20 C22 SING N N 27 
A1IDP C20 C19 DOUB Y N 28 
A1IDP C22 N2  TRIP N N 29 
A1IDP C18 C19 SING Y N 30 
A1IDP C19 C23 SING N N 31 
A1IDP C23 F2  SING N N 32 
A1IDP C23 F1  SING N N 33 
A1IDP C23 F   SING N N 34 
A1IDP C1  H1  SING N N 35 
A1IDP C3  H2  SING N N 36 
A1IDP C3  H3  SING N N 37 
A1IDP C7  H4  SING N N 38 
A1IDP C9  H5  SING N N 39 
A1IDP C10 H6  SING N N 40 
A1IDP C10 H7  SING N N 41 
A1IDP C11 H8  SING N N 42 
A1IDP C11 H9  SING N N 43 
A1IDP C12 H10 SING N N 44 
A1IDP C13 H11 SING N N 45 
A1IDP C13 H12 SING N N 46 
A1IDP C14 H13 SING N N 47 
A1IDP C15 H14 SING N N 48 
A1IDP C21 H15 SING N N 49 
A1IDP C18 H16 SING N N 50 
A1IDP C17 H17 SING N N 51 
A1IDP C   H18 SING N N 52 
A1IDP C   H19 SING N N 53 
A1IDP C   H20 SING N N 54 
A1IDP C4  H21 SING N N 55 
A1IDP C4  H22 SING N N 56 
A1IDP C4  H23 SING N N 57 
A1IDP C6  H24 SING N N 58 
A1IDP N1  H25 SING N N 59 
A1IDP N1  H26 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IDP InChI            InChI                1.06  "InChI=1S/C24H26F3N3O2/c1-3-23(31)30(15(2)16-4-11-22(24(25,26)27)17(12-16)14-28)19-6-9-20(10-7-19)32-21-8-5-18(29)13-21/h4,6-7,9-12,15,18,21H,3,5,8,13,29H2,1-2H3/t15-,18+,21+/m0/s1" 
A1IDP InChIKey         InChI                1.06  TYGCFJODHANZAI-RRMPHLOHSA-N                                                                                                                                                           
A1IDP SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](C)c1ccc(c(c1)C#N)C(F)(F)F)c2ccc(O[C@@H]3CC[C@@H](N)C3)cc2"                                                                                                           
A1IDP SMILES           CACTVS               3.385 "CCC(=O)N([CH](C)c1ccc(c(c1)C#N)C(F)(F)F)c2ccc(O[CH]3CC[CH](N)C3)cc2"                                                                                                                 
A1IDP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)O[C@@H]2CC[C@H](C2)N)[C@@H](C)c3ccc(c(c3)C#N)C(F)(F)F"                                                                                                            
A1IDP SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)OC2CCC(C2)N)C(C)c3ccc(c(c3)C#N)C(F)(F)F"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           A1IDP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-[3-cyano-4-(trifluoromethyl)phenyl]ethyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IDP "Create component" 2024-06-06 PDBE 
A1IDP "Initial release"  2024-10-02 RCSB 
A1IDP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1IDP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
