data_A1ICP
# 
_chem_comp.id                                    A1ICP 
_chem_comp.name                                  "~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-6-oxidanylidene-pyrimidin-5-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H34 N6 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-03 
_chem_comp.pdbx_modified_date                    2025-01-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        506.552 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ICP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FHQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ICP N1  N1  N 0 1 N N N N N N 29.792 -2.927 18.698 0.940  -1.653 0.164  N1  A1ICP 1  
A1ICP N3  N2  N 0 1 N N N N N N 29.808 -0.816 15.730 4.559  -1.091 0.308  N3  A1ICP 2  
A1ICP C4  C1  C 0 1 N N N N N N 29.380 -1.963 17.775 2.151  -1.142 -0.143 C4  A1ICP 3  
A1ICP C5  C2  C 0 1 N N N N N N 30.636 -0.033 15.030 4.802  0.232  0.401  C5  A1ICP 4  
A1ICP C6  C3  C 0 1 N N N N N N 30.442 2.004  13.646 6.241  2.135  0.347  C6  A1ICP 5  
A1ICP C7  C4  C 0 1 N N N N N N 31.076 2.913  14.680 5.814  2.596  1.742  C7  A1ICP 6  
A1ICP C8  C5  C 0 1 N N N N N N 31.444 1.499  12.643 7.717  2.476  0.127  C8  A1ICP 7  
A1ICP C10 C6  C 0 1 N N S N N N 28.949 -3.170 19.865 -0.248 -1.218 -0.575 C10 A1ICP 8  
A1ICP C13 C7  C 0 1 N N N N N N 28.892 -5.682 19.725 0.068  -2.972 -2.326 C13 A1ICP 9  
A1ICP C15 C8  C 0 1 N N N N N N 26.847 0.520  22.033 -4.297 1.422  0.088  C15 A1ICP 10 
A1ICP C17 C9  C 0 1 N N N N N N 27.793 -0.363 25.043 -5.125 -0.029 2.534  C17 A1ICP 11 
A1ICP C20 C10 C 0 1 N N S N N N 27.408 1.261  20.805 -3.480 2.594  -0.460 C20 A1ICP 12 
A1ICP C21 C11 C 0 1 N N N N N N 26.384 2.284  20.349 -2.509 2.115  -1.516 C21 A1ICP 13 
A1ICP C22 C12 C 0 1 N N N N N N 28.412 3.476  20.459 -4.274 3.090  -2.668 C22 A1ICP 14 
A1ICP C1  C13 C 0 1 N N N N N N 31.033 -3.575 18.589 0.825  -2.569 1.147  C1  A1ICP 15 
A1ICP N2  N3  N 0 1 N N N N N N 31.804 -3.342 17.565 1.863  -2.983 1.822  N2  A1ICP 16 
A1ICP C2  C14 C 0 1 N N N N N N 31.426 -2.427 16.630 3.090  -2.519 1.571  C2  A1ICP 17 
A1ICP C3  C15 C 0 1 N N N N N N 30.212 -1.751 16.690 3.279  -1.590 0.588  C3  A1ICP 18 
A1ICP O1  O1  O 0 1 N N N N N N 29.891 0.808  14.319 6.054  0.700  0.233  O1  A1ICP 19 
A1ICP O2  O2  O 0 1 N N N N N N 28.307 -1.408 17.966 2.272  -0.313 -1.030 O2  A1ICP 20 
A1ICP O3  O3  O 0 1 N N N N N N 31.840 -0.101 15.074 3.892  1.002  0.637  O3  A1ICP 21 
A1ICP C9  C16 C 0 1 N N N N N N 29.276 2.698  12.980 5.391  2.846  -0.708 C9  A1ICP 22 
A1ICP C11 C17 C 0 1 N N N N N N 29.251 -4.495 20.564 -0.889 -2.423 -1.266 C11 A1ICP 23 
A1ICP C12 C18 C 0 1 N N N N N N 29.079 -1.996 20.805 -1.237 -0.603 0.381  C12 A1ICP 24 
A1ICP O4  O4  O 0 1 N N N N N N 30.153 -1.400 20.905 -0.976 -0.534 1.563  O4  A1ICP 25 
A1ICP N4  N4  N 0 1 N N N N N N 27.939 -1.625 21.403 -2.412 -0.128 -0.078 N4  A1ICP 26 
A1ICP C14 C19 C 0 1 N N S N N N 27.842 -0.574 22.407 -3.374 0.470  0.851  C14 A1ICP 27 
A1ICP C16 C20 C 0 1 N N S N N N 27.906 -1.217 23.805 -4.207 -0.635 1.504  C16 A1ICP 28 
A1ICP N5  N5  N 0 1 N N N N N N 28.839 -0.864 25.973 -4.612 0.531  3.648  N5  A1ICP 29 
A1ICP C18 C21 C 0 1 N N N N N N 28.579 -6.997 20.362 -0.341 -4.256 -3.051 C18 A1ICP 30 
A1ICP C19 C22 C 0 1 N N N N N N 27.492 -6.200 19.688 -0.385 -2.915 -3.786 C19 A1ICP 31 
A1ICP N6  N6  N 0 1 N N N N N N 26.981 3.467  20.190 -2.975 2.410  -2.741 N6  A1ICP 32 
A1ICP C23 C23 C 0 1 N N N N N N 28.700 2.064  20.995 -4.397 3.588  -1.211 C23 A1ICP 33 
A1ICP O5  O5  O 0 1 N N N N N N 25.176 2.056  20.220 -1.461 1.547  -1.289 O5  A1ICP 34 
A1ICP O6  O6  O 0 1 N N N N N N 28.003 -2.591 24.001 -4.984 -1.298 0.505  O6  A1ICP 35 
A1ICP O7  O7  O 0 1 N N N N N N 27.291 0.706  25.112 -6.326 -0.046 2.362  O7  A1ICP 36 
A1ICP H3  H1  H 0 1 N N N N N N 28.828 -0.727 15.555 5.270  -1.697 0.048  H3  A1ICP 37 
A1ICP H6  H2  H 0 1 N N N N N N 31.487 3.804  14.183 5.955  3.674  1.828  H6  A1ICP 38 
A1ICP H4  H3  H 0 1 N N N N N N 30.316 3.220  15.413 4.763  2.354  1.899  H4  A1ICP 39 
A1ICP H5  H4  H 0 1 N N N N N N 31.885 2.374  15.195 6.420  2.090  2.494  H5  A1ICP 40 
A1ICP H9  H5  H 0 1 N N N N N N 31.890 2.351  12.108 8.322  1.969  0.879  H9  A1ICP 41 
A1ICP H8  H6  H 0 1 N N N N N N 32.235 0.939  13.164 8.021  2.147  -0.867 H8  A1ICP 42 
A1ICP H7  H7  H 0 1 N N N N N N 30.940 0.837  11.923 7.858  3.553  0.213  H7  A1ICP 43 
A1ICP H13 H8  H 0 1 N N N N N N 27.903 -3.210 19.528 0.040  -0.481 -1.325 H13 A1ICP 44 
A1ICP H16 H9  H 0 1 N N N N N N 29.434 -5.750 18.770 1.129  -2.826 -2.123 H16 A1ICP 45 
A1ICP H20 H10 H 0 1 N N N N N N 25.872 0.073  21.788 -5.067 1.798  0.761  H20 A1ICP 46 
A1ICP H19 H11 H 0 1 N N N N N N 26.728 1.221  22.872 -4.766 0.888  -0.739 H19 A1ICP 47 
A1ICP H29 H12 H 0 1 N N N N N N 27.564 0.531  19.997 -2.948 3.098  0.347  H29 A1ICP 48 
A1ICP H32 H13 H 0 1 N N N N N N 28.982 3.668  19.538 -4.297 3.934  -3.358 H32 A1ICP 49 
A1ICP H31 H14 H 0 1 N N N N N N 28.663 4.238  21.211 -5.079 2.393  -2.898 H31 A1ICP 50 
A1ICP H1  H15 H 0 1 N N N N N N 31.349 -4.268 19.355 -0.150 -2.970 1.383  H1  A1ICP 51 
A1ICP H2  H16 H 0 1 N N N N N N 32.096 -2.218 15.809 3.932  -2.878 2.145  H2  A1ICP 52 
A1ICP H11 H17 H 0 1 N N N N N N 29.633 3.600  12.462 5.532  3.924  -0.622 H11 A1ICP 53 
A1ICP H10 H18 H 0 1 N N N N N N 28.811 2.017  12.252 5.695  2.518  -1.701 H10 A1ICP 54 
A1ICP H12 H19 H 0 1 N N N N N N 28.535 2.982  13.742 4.340  2.604  -0.551 H12 A1ICP 55 
A1ICP H14 H20 H 0 1 N N N N N N 30.326 -4.536 20.792 -1.096 -3.198 -0.528 H14 A1ICP 56 
A1ICP H15 H21 H 0 1 N N N N N N 28.676 -4.539 21.501 -1.820 -2.117 -1.742 H15 A1ICP 57 
A1ICP H17 H22 H 0 1 N N N N N N 27.099 -2.101 21.143 -2.621 -0.183 -1.024 H17 A1ICP 58 
A1ICP H18 H23 H 0 1 N N N N N N 28.811 -0.059 22.333 -2.838 1.024  1.622  H18 A1ICP 59 
A1ICP H21 H24 H 0 1 N N N N N N 29.002 -1.120 23.818 -3.544 -1.354 1.986  H21 A1ICP 60 
A1ICP H22 H25 H 0 1 N N N N N N 29.164 -0.283 26.720 -5.204 0.856  4.344  H22 A1ICP 61 
A1ICP H23 H26 H 0 1 N N N N N N 29.218 -1.782 25.852 -3.651 0.610  3.752  H23 A1ICP 62 
A1ICP H26 H27 H 0 1 N N N N N N 28.941 -7.930 19.906 0.450  -4.954 -3.325 H26 A1ICP 63 
A1ICP H25 H28 H 0 1 N N N N N N 28.591 -7.095 21.458 -1.293 -4.709 -2.773 H25 A1ICP 64 
A1ICP H28 H29 H 0 1 N N N N N N 27.059 -6.551 18.739 -1.366 -2.486 -3.992 H28 A1ICP 65 
A1ICP H27 H30 H 0 1 N N N N N N 26.710 -5.716 20.291 0.377  -2.730 -4.543 H27 A1ICP 66 
A1ICP H30 H31 H 0 1 N N N N N N 26.483 4.286  19.907 -2.513 2.201  -3.568 H30 A1ICP 67 
A1ICP H34 H32 H 0 1 N N N N N N 29.522 1.602  20.429 -5.425 3.513  -0.858 H34 A1ICP 68 
A1ICP H33 H33 H 0 1 N N N N N N 28.968 2.108  22.061 -4.027 4.609  -1.114 H33 A1ICP 69 
A1ICP H35 H34 H 0 1 N N N N N N 28.029 -2.777 24.932 -4.458 -1.712 -0.192 H35 A1ICP 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ICP N1  C1  SING N N 1  
A1ICP C1  N2  DOUB N N 2  
A1ICP N2  C2  SING N N 3  
A1ICP C2  C3  DOUB N N 4  
A1ICP C3  C4  SING N N 5  
A1ICP N1  C4  SING N N 6  
A1ICP C3  N3  SING N N 7  
A1ICP N3  C5  SING N N 8  
A1ICP C5  O1  SING N N 9  
A1ICP C4  O2  DOUB N N 10 
A1ICP C5  O3  DOUB N N 11 
A1ICP O1  C6  SING N N 12 
A1ICP C6  C7  SING N N 13 
A1ICP C6  C8  SING N N 14 
A1ICP C6  C9  SING N N 15 
A1ICP N1  C10 SING N N 16 
A1ICP C10 C11 SING N N 17 
A1ICP C10 C12 SING N N 18 
A1ICP C11 C13 SING N N 19 
A1ICP C12 O4  DOUB N N 20 
A1ICP C12 N4  SING N N 21 
A1ICP N4  C14 SING N N 22 
A1ICP C14 C15 SING N N 23 
A1ICP C14 C16 SING N N 24 
A1ICP C16 C17 SING N N 25 
A1ICP C17 N5  SING N N 26 
A1ICP C13 C18 SING N N 27 
A1ICP C18 C19 SING N N 28 
A1ICP C13 C19 SING N N 29 
A1ICP C15 C20 SING N N 30 
A1ICP C20 C21 SING N N 31 
A1ICP C21 N6  SING N N 32 
A1ICP N6  C22 SING N N 33 
A1ICP C22 C23 SING N N 34 
A1ICP C20 C23 SING N N 35 
A1ICP C21 O5  DOUB N N 36 
A1ICP C16 O6  SING N N 37 
A1ICP C17 O7  DOUB N N 38 
A1ICP N3  H3  SING N N 39 
A1ICP C7  H6  SING N N 40 
A1ICP C7  H4  SING N N 41 
A1ICP C7  H5  SING N N 42 
A1ICP C8  H9  SING N N 43 
A1ICP C8  H8  SING N N 44 
A1ICP C8  H7  SING N N 45 
A1ICP C10 H13 SING N N 46 
A1ICP C13 H16 SING N N 47 
A1ICP C15 H20 SING N N 48 
A1ICP C15 H19 SING N N 49 
A1ICP C20 H29 SING N N 50 
A1ICP C22 H32 SING N N 51 
A1ICP C22 H31 SING N N 52 
A1ICP C1  H1  SING N N 53 
A1ICP C2  H2  SING N N 54 
A1ICP C9  H11 SING N N 55 
A1ICP C9  H10 SING N N 56 
A1ICP C9  H12 SING N N 57 
A1ICP C11 H14 SING N N 58 
A1ICP C11 H15 SING N N 59 
A1ICP N4  H17 SING N N 60 
A1ICP C14 H18 SING N N 61 
A1ICP C16 H21 SING N N 62 
A1ICP N5  H22 SING N N 63 
A1ICP N5  H23 SING N N 64 
A1ICP C18 H26 SING N N 65 
A1ICP C18 H25 SING N N 66 
A1ICP C19 H28 SING N N 67 
A1ICP C19 H27 SING N N 68 
A1ICP N6  H30 SING N N 69 
A1ICP C23 H34 SING N N 70 
A1ICP C23 H33 SING N N 71 
A1ICP O6  H35 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ICP InChI            InChI                1.06  "InChI=1S/C23H34N6O7/c1-23(2,3)36-22(35)28-15-10-25-11-29(21(15)34)16(8-12-4-5-12)20(33)27-14(17(30)18(24)31)9-13-6-7-26-19(13)32/h10-14,16-17,30H,4-9H2,1-3H3,(H2,24,31)(H,26,32)(H,27,33)(H,28,35)/t13-,14+,16-,17+/m0/s1" 
A1ICP InChIKey         InChI                1.06  QIVRQJJOLGOJTC-HDEZJCGLSA-N                                                                                                                                                                                                  
A1ICP SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)NC1=CN=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)C(N)=O)C1=O"                                                                                                                                     
A1ICP SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)NC1=CN=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C1=O"                                                                                                                                            
A1ICP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CN=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C(C(=O)N)O"                                                                                                                                         
A1ICP SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CN=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O"                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           A1ICP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl ~{N}-[1-[(2~{S})-1-[[(2~{S})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-6-oxidanylidene-pyrimidin-5-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ICP "Create component" 2024-06-03 PDBE 
A1ICP "Modify PCM"       2024-09-27 PDBE 
A1ICP "Initial release"  2025-01-29 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ICP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C16 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
