data_A1BEP
# 
_chem_comp.id                                    A1BEP 
_chem_comp.name                                  "(3R)-3-{1-methyl-6-[(piperidin-4-yl)amino]-1H-indazol-3-yl}piperidine-2,6-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H23 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-31 
_chem_comp.pdbx_modified_date                    2024-12-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.408 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BEP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9DQD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BEP N1  N1  N 0 1 Y N N N N N 127.405 111.960 170.326 2.249  -1.752 0.369  N1  A1BEP 1  
A1BEP N3  N2  N 0 1 N N N N N N 127.978 108.114 167.481 5.202  0.787  -1.012 N3  A1BEP 2  
A1BEP C4  C1  C 0 1 Y N N N N N 127.175 109.915 171.279 0.532  -0.353 0.082  C4  A1BEP 3  
A1BEP C5  C2  C 0 1 Y N N N N N 126.755 110.879 172.205 0.000  -1.650 0.221  C5  A1BEP 4  
A1BEP C6  C3  C 0 1 Y N N N N N 126.248 109.187 173.815 -2.208 -0.747 -0.029 C6  A1BEP 5  
A1BEP C7  C4  C 0 1 Y N N N N N 127.571 110.690 170.115 1.981  -0.491 0.187  C7  A1BEP 6  
A1BEP C8  C5  C 0 1 N N N N N N 129.326 108.023 167.259 5.719  1.442  0.039  C8  A1BEP 7  
A1BEP C10 C6  C 0 1 N N N N N N 130.157 109.214 167.630 4.881  1.761  1.249  C10 A1BEP 8  
A1BEP C13 C7  C 0 1 N N N N N N 123.850 109.855 176.121 -5.789 -0.254 -0.922 C13 A1BEP 9  
A1BEP C15 C8  C 0 1 N N N N N N 123.176 108.551 176.497 -6.733 0.942  -1.076 C15 A1BEP 10 
A1BEP C17 C9  C 0 1 N N N N N N 125.362 109.703 176.133 -4.476 0.217  -0.290 C17 A1BEP 11 
A1BEP C1  C10 C 0 1 Y N N N N N 127.122 108.572 171.650 -0.327 0.735  -0.112 C1  A1BEP 12 
A1BEP C11 C11 C 0 1 N N N N N N 129.637 109.948 168.862 3.792  0.695  1.403  C11 A1BEP 13 
A1BEP C12 C12 C 0 1 N N N N N N 125.832 109.189 177.482 -4.776 0.878  1.059  C12 A1BEP 14 
A1BEP C14 C13 C 0 1 N N N N N N 125.132 107.894 177.836 -5.749 2.040  0.847  C14 A1BEP 15 
A1BEP C16 C14 C 0 1 N N R N N N 128.113 110.185 168.796 2.988  0.627  0.100  C16 A1BEP 16 
A1BEP C18 C15 C 0 1 N N N N N N 126.614 113.407 172.134 0.976  -3.946 0.582  C18 A1BEP 17 
A1BEP C2  C16 C 0 1 Y N N N N N 126.663 108.214 172.906 -1.675 0.535  -0.166 C2  A1BEP 18 
A1BEP C3  C17 C 0 1 Y N N N N N 126.294 110.534 173.462 -1.378 -1.836 0.164  C3  A1BEP 19 
A1BEP C9  C18 C 0 1 N N N N N N 127.352 108.937 168.374 3.928  0.369  -1.048 C9  A1BEP 20 
A1BEP N2  N3  N 0 1 Y N N N N N 126.910 112.083 171.592 1.065  -2.496 0.397  N2  A1BEP 21 
A1BEP N4  N4  N 0 1 N N N N N N 123.657 108.086 177.825 -6.989 1.538  0.241  N4  A1BEP 22 
A1BEP N5  N5  N 0 1 N N N N N N 125.791 108.800 175.072 -3.591 -0.932 -0.086 N5  A1BEP 23 
A1BEP O1  O1  O 0 1 N N N N N N 129.808 107.005 166.773 6.881  1.783  0.014  O1  A1BEP 24 
A1BEP O2  O2  O 0 1 N N N N N N 126.234 108.670 168.803 3.524  -0.222 -2.026 O2  A1BEP 25 
A1BEP H21 H1  H 0 1 N N N N N N 127.392 107.517 166.934 5.772  0.611  -1.777 H21 A1BEP 26 
A1BEP H5  H2  H 0 1 N N N N N N 131.184 108.875 167.832 5.513  1.768  2.138  H5  A1BEP 27 
A1BEP H4  H3  H 0 1 N N N N N N 130.163 109.914 166.782 4.418  2.740  1.124  H4  A1BEP 28 
A1BEP H10 H4  H 0 1 N N N N N N 123.560 110.632 176.843 -6.253 -1.003 -0.281 H10 A1BEP 29 
A1BEP H11 H5  H 0 1 N N N N N N 123.525 110.151 175.113 -5.587 -0.686 -1.901 H11 A1BEP 30 
A1BEP H15 H6  H 0 1 N N N N N N 122.087 108.704 176.538 -6.274 1.685  -1.728 H15 A1BEP 31 
A1BEP H14 H7  H 0 1 N N N N N N 123.411 107.789 175.739 -7.674 0.607  -1.513 H14 A1BEP 32 
A1BEP H17 H8  H 0 1 N N N N N N 125.810 110.694 175.965 -3.993 0.938  -0.949 H17 A1BEP 33 
A1BEP H1  H9  H 0 1 N N N N N N 127.440 107.809 170.955 0.077  1.731  -0.220 H1  A1BEP 34 
A1BEP H7  H10 H 0 1 N N N N N N 129.864 109.347 169.755 4.252  -0.273 1.600  H7  A1BEP 35 
A1BEP H6  H11 H 0 1 N N N N N N 130.145 110.921 168.936 3.133  0.961  2.229  H6  A1BEP 36 
A1BEP H8  H12 H 0 1 N N N N N N 126.917 109.014 177.443 -5.224 0.146  1.731  H8  A1BEP 37 
A1BEP H9  H13 H 0 1 N N N N N N 125.609 109.942 178.253 -3.850 1.253  1.494  H9  A1BEP 38 
A1BEP H13 H14 H 0 1 N N N N N N 125.403 107.122 177.101 -5.975 2.503  1.807  H13 A1BEP 39 
A1BEP H12 H15 H 0 1 N N N N N N 125.449 107.572 178.839 -5.295 2.778  0.186  H12 A1BEP 40 
A1BEP H16 H16 H 0 1 N N N N N N 127.932 110.961 168.038 2.470  1.573  -0.058 H16 A1BEP 41 
A1BEP H19 H17 H 0 1 N N N N N N 126.853 114.173 171.382 0.893  -4.172 1.645  H19 A1BEP 42 
A1BEP H18 H18 H 0 1 N N N N N N 125.547 113.467 172.393 0.098  -4.326 0.060  H18 A1BEP 43 
A1BEP H20 H19 H 0 1 N N N N N N 127.220 113.578 173.036 1.871  -4.420 0.179  H20 A1BEP 44 
A1BEP H2  H20 H 0 1 N N N N N N 126.626 107.171 173.185 -2.335 1.377  -0.317 H2  A1BEP 45 
A1BEP H3  H21 H 0 1 N N N N N N 125.975 111.296 174.158 -1.796 -2.826 0.269  H3  A1BEP 46 
A1BEP H22 H22 H 0 1 N N N N N N 123.413 108.767 178.515 -7.682 2.268  0.179  H22 A1BEP 47 
A1BEP H23 H24 H 0 1 N N N N N N 125.005 108.207 174.896 -3.966 -1.822 0.009  H23 A1BEP 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BEP O1  C8  DOUB N N 1  
A1BEP C8  N3  SING N N 2  
A1BEP C8  C10 SING N N 3  
A1BEP N3  C9  SING N N 4  
A1BEP C10 C11 SING N N 5  
A1BEP C9  C16 SING N N 6  
A1BEP C9  O2  DOUB N N 7  
A1BEP C16 C11 SING N N 8  
A1BEP C16 C7  SING N N 9  
A1BEP C7  N1  DOUB Y N 10 
A1BEP C7  C4  SING Y N 11 
A1BEP N1  N2  SING Y N 12 
A1BEP C4  C1  DOUB Y N 13 
A1BEP C4  C5  SING Y N 14 
A1BEP N2  C18 SING N N 15 
A1BEP N2  C5  SING Y N 16 
A1BEP C1  C2  SING Y N 17 
A1BEP C5  C3  DOUB Y N 18 
A1BEP C2  C6  DOUB Y N 19 
A1BEP C3  C6  SING Y N 20 
A1BEP C6  N5  SING N N 21 
A1BEP N5  C17 SING N N 22 
A1BEP C13 C17 SING N N 23 
A1BEP C13 C15 SING N N 24 
A1BEP C17 C12 SING N N 25 
A1BEP C15 N4  SING N N 26 
A1BEP C12 C14 SING N N 27 
A1BEP N4  C14 SING N N 28 
A1BEP N3  H21 SING N N 29 
A1BEP C10 H5  SING N N 30 
A1BEP C10 H4  SING N N 31 
A1BEP C13 H10 SING N N 32 
A1BEP C13 H11 SING N N 33 
A1BEP C15 H15 SING N N 34 
A1BEP C15 H14 SING N N 35 
A1BEP C17 H17 SING N N 36 
A1BEP C1  H1  SING N N 37 
A1BEP C11 H7  SING N N 38 
A1BEP C11 H6  SING N N 39 
A1BEP C12 H8  SING N N 40 
A1BEP C12 H9  SING N N 41 
A1BEP C14 H13 SING N N 42 
A1BEP C14 H12 SING N N 43 
A1BEP C16 H16 SING N N 44 
A1BEP C18 H19 SING N N 45 
A1BEP C18 H18 SING N N 46 
A1BEP C18 H20 SING N N 47 
A1BEP C2  H2  SING N N 48 
A1BEP C3  H3  SING N N 49 
A1BEP N4  H22 SING N N 50 
A1BEP N5  H23 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BEP SMILES           ACDLabs              14.52   "O=C1NC(=O)CCC1c1nn(C)c2cc(ccc21)NC1CCNCC1"                                                                                                                 
A1BEP InChI            InChI                1.06    "InChI=1S/C18H23N5O2/c1-23-15-10-12(20-11-6-8-19-9-7-11)2-3-13(15)17(22-23)14-4-5-16(24)21-18(14)25/h2-3,10-11,14,19-20H,4-9H2,1H3,(H,21,24,25)/t14-/m1/s1" 
A1BEP InChIKey         InChI                1.06    DLGVDMLBTJKEOF-CQSZACIVSA-N                                                                                                                                 
A1BEP SMILES_CANONICAL CACTVS               3.385   "Cn1nc([C@H]2CCC(=O)NC2=O)c3ccc(NC4CCNCC4)cc13"                                                                                                             
A1BEP SMILES           CACTVS               3.385   "Cn1nc([CH]2CCC(=O)NC2=O)c3ccc(NC4CCNCC4)cc13"                                                                                                              
A1BEP SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cn1c2cc(ccc2c(n1)[C@H]3CCC(=O)NC3=O)NC4CCNCC4"                                                                                                             
A1BEP SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cn1c2cc(ccc2c(n1)C3CCC(=O)NC3=O)NC4CCNCC4"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BEP "SYSTEMATIC NAME" ACDLabs              14.52   "(3R)-3-{1-methyl-6-[(piperidin-4-yl)amino]-1H-indazol-3-yl}piperidine-2,6-dione" 
A1BEP "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[1-methyl-6-(piperidin-4-ylamino)indazol-3-yl]piperidine-2,6-dione"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BEP "Create component" 2024-10-31 RCSB 
A1BEP "Initial release"  2024-12-25 RCSB 
# 
