data_YNO
# 
_chem_comp.id                                    YNO 
_chem_comp.name                                  "5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H16 Br Cl N6 O4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-07 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        559.844 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8RDC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNO C15  C1  C  0 1 Y N N N N N 7.769  -23.456 -14.695 1.804  -1.834 -0.461 C15  YNO 1  
YNO C14  C2  C  0 1 Y N N N N N 5.419  -23.154 -15.746 3.727  -0.177 -0.676 C14  YNO 2  
YNO C13  C3  C  0 1 Y N N N N N 6.866  -22.977 -15.611 2.824  -1.089 0.061  C13  YNO 3  
YNO C7   C4  C  0 1 N N R N N N 12.016 -24.620 -13.446 -1.401 -1.589 -0.220 C7   YNO 4  
YNO C6   C5  C  0 1 N N R N N N 10.648 -24.543 -14.131 -0.840 -2.964 -0.592 C6   YNO 5  
YNO C5   C6  C  0 1 N N S N N N 10.273 -23.104 -14.442 0.125  -3.427 0.503  C5   YNO 6  
YNO C3   C7  C  0 1 N N R N N N 11.691 -22.393 -12.551 -1.182 -2.050 2.123  C3   YNO 7  
YNO C4   C8  C  0 1 N N R N N N 10.295 -22.288 -13.154 -0.613 -3.443 1.845  C4   YNO 8  
YNO C2   C9  C  0 1 N N N N N N 11.836 -21.647 -11.254 -0.036 -1.043 2.237  C2   YNO 9  
YNO O1   O1  O  0 1 N N N N N N 13.208 -21.684 -10.844 -0.552 0.222  2.654  O1   YNO 10 
YNO O8   O2  O  0 1 N N N N N N 12.036 -23.774 -12.287 -2.047 -1.668 1.052  O8   YNO 11 
YNO S9   S1  S  0 1 N N N N N N 13.331 -24.202 -14.661 -2.599 -1.064 -1.477 S9   YNO 12 
YNO N10  N1  N  0 1 Y N N N N N 8.966  -23.019 -15.120 1.259  -2.502 0.579  N10  YNO 13 
YNO N11  N2  N  0 1 Y N N N N N 8.840  -22.307 -16.257 1.904  -2.190 1.648  N11  YNO 14 
YNO N12  N3  N  0 1 Y N N N N N 7.555  -22.266 -16.547 2.842  -1.352 1.381  N12  YNO 15 
YNO O16  O3  O  0 1 N N N N N N 9.342  -22.779 -12.232 0.297  -3.804 2.886  O16  YNO 16 
YNO O17  O4  O  0 1 N N N N N N 10.684 -25.204 -15.390 -1.913 -3.901 -0.712 O17  YNO 17 
YNO N18  N4  N  0 1 Y N N N N N 4.670  -23.832 -14.928 4.692  0.521  -0.148 N18  YNO 18 
YNO C19  C10 C  0 1 Y N N N N N 3.369  -23.748 -15.327 5.393  1.279  -0.961 C19  YNO 19 
YNO C20  C11 C  0 1 Y N N N N N 3.103  -23.026 -16.448 5.030  1.246  -2.247 C20  YNO 20 
YNO S21  S2  S  0 1 Y N N N N N 4.563  -22.401 -17.061 3.673  0.134  -2.409 S21  YNO 21 
YNO C22  C12 C  0 1 Y N N N N N 14.730 -24.317 -13.573 -2.905 0.619  -1.054 C22  YNO 22 
YNO C23  C13 C  0 1 Y N N N N N 15.317 -25.560 -13.179 -3.799 1.393  -1.809 C23  YNO 23 
YNO N24  N5  N  0 1 Y N N N N N 16.417 -25.702 -12.413 -4.027 2.663  -1.487 N24  YNO 24 
YNO C25  C14 C  0 1 Y N N N N N 16.938 -24.580 -11.902 -3.432 3.234  -0.464 C25  YNO 25 
YNO C26  C15 C  0 1 Y N N N N N 16.428 -23.345 -12.191 -2.534 2.530  0.328  C26  YNO 26 
YNO C27  C16 C  0 1 Y N N N N N 15.352 -23.188 -13.044 -2.266 1.203  0.039  C27  YNO 27 
YNO BR28 BR1 BR 0 0 N N N N N N 17.193 -21.805 -11.379 -1.690 3.376  1.793  BR28 YNO 28 
YNO CL29 CL1 CL 0 0 N N N N N N 2.202  -24.544 -14.346 6.708  2.264  -0.398 CL29 YNO 29 
YNO C30  C17 C  0 1 N N N N N N 10.830 -26.617 -15.310 -2.466 -3.986 -2.027 C30  YNO 30 
YNO C31  C18 C  0 1 N N N N N N 14.645 -26.785 -13.550 -4.470 0.812  -2.932 C31  YNO 31 
YNO N32  N6  N  0 1 N N N N N N 14.118 -27.772 -13.795 -5.003 0.351  -3.824 N32  YNO 32 
YNO H1   H1  H  0 1 N N N N N N 7.562  -24.055 -13.821 1.493  -1.876 -1.495 H1   YNO 33 
YNO H2   H2  H  0 1 N N N N N N 12.206 -25.663 -13.154 -0.587 -0.866 -0.170 H2   YNO 34 
YNO H3   H3  H  0 1 N N N N N N 9.886  -24.988 -13.475 -0.308 -2.896 -1.541 H3   YNO 35 
YNO H4   H4  H  0 1 N N N N N N 11.041 -22.693 -15.114 0.485  -4.429 0.273  H4   YNO 36 
YNO H5   H5  H  0 1 N N N N N N 12.408 -21.975 -13.273 -1.745 -2.066 3.056  H5   YNO 37 
YNO H6   H6  H  0 1 N N N N N N 10.089 -21.235 -13.396 -1.426 -4.168 1.804  H6   YNO 38 
YNO H7   H7  H  0 1 N N N N N N 11.521 -20.602 -11.393 0.689  -1.399 2.969  H7   YNO 39 
YNO H8   H8  H  0 1 N N N N N N 11.209 -22.120 -10.484 0.451  -0.936 1.267  H8   YNO 40 
YNO H9   H9  H  0 1 N N N N N N 13.307 -21.214 -10.024 0.121  0.910  2.747  H9   YNO 41 
YNO H10  H10 H  0 1 N N N N N N 9.371  -22.258 -11.438 -0.104 -3.834 3.766  H10  YNO 42 
YNO H11  H11 H  0 1 N N N N N N 2.125  -22.874 -16.879 5.492  1.803  -3.049 H11  YNO 43 
YNO H12  H12 H  0 1 N N N N N N 17.788 -24.653 -11.240 -3.644 4.267  -0.236 H12  YNO 44 
YNO H13  H13 H  0 1 N N N N N N 14.997 -22.200 -13.298 -1.575 0.635  0.644  H13  YNO 45 
YNO H14  H14 H  0 1 N N N N N N 10.848 -27.042 -16.324 -3.273 -4.718 -2.034 H14  YNO 46 
YNO H15  H15 H  0 1 N N N N N N 11.771 -26.860 -14.794 -2.855 -3.012 -2.322 H15  YNO 47 
YNO H16  H16 H  0 1 N N N N N N 9.984  -27.042 -14.749 -1.690 -4.295 -2.728 H16  YNO 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNO S21 C20  SING Y N 1  
YNO S21 C14  SING Y N 2  
YNO N12 N11  DOUB Y N 3  
YNO N12 C13  SING Y N 4  
YNO C20 C19  DOUB Y N 5  
YNO N11 N10  SING Y N 6  
YNO C14 C13  SING N N 7  
YNO C14 N18  DOUB Y N 8  
YNO C13 C15  DOUB Y N 9  
YNO O17 C30  SING N N 10 
YNO O17 C6   SING N N 11 
YNO C19 N18  SING Y N 12 
YNO C19 CL29 SING N N 13 
YNO N10 C15  SING Y N 14 
YNO N10 C5   SING N N 15 
YNO S9  C22  SING N N 16 
YNO S9  C7   SING N N 17 
YNO C5  C6   SING N N 18 
YNO C5  C4   SING N N 19 
YNO C6  C7   SING N N 20 
YNO N32 C31  TRIP N N 21 
YNO C22 C23  DOUB Y N 22 
YNO C22 C27  SING Y N 23 
YNO C31 C23  SING N N 24 
YNO C7  O8   SING N N 25 
YNO C23 N24  SING Y N 26 
YNO C4  C3   SING N N 27 
YNO C4  O16  SING N N 28 
YNO C27 C26  DOUB Y N 29 
YNO C3  O8   SING N N 30 
YNO C3  C2   SING N N 31 
YNO N24 C25  DOUB Y N 32 
YNO C26 C25  SING Y N 33 
YNO C26 BR28 SING N N 34 
YNO C2  O1   SING N N 35 
YNO C15 H1   SING N N 36 
YNO C7  H2   SING N N 37 
YNO C6  H3   SING N N 38 
YNO C5  H4   SING N N 39 
YNO C3  H5   SING N N 40 
YNO C4  H6   SING N N 41 
YNO C2  H7   SING N N 42 
YNO C2  H8   SING N N 43 
YNO O1  H9   SING N N 44 
YNO O16 H10  SING N N 45 
YNO C20 H11  SING N N 46 
YNO C25 H12  SING N N 47 
YNO C27 H13  SING N N 48 
YNO C30 H14  SING N N 49 
YNO C30 H15  SING N N 50 
YNO C30 H16  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNO InChI            InChI                1.06  "InChI=1S/C18H16BrClN6O4S2/c1-29-16-14(26-5-10(24-25-26)17-23-13(20)7-31-17)15(28)11(6-27)30-18(16)32-12-2-8(19)4-22-9(12)3-21/h2,4-5,7,11,14-16,18,27-28H,6H2,1H3/t11-,14+,15+,16-,18-/m1/s1" 
YNO InChIKey         InChI                1.06  MZSZXCMHHUHYMW-PTERYMMESA-N                                                                                                                                                                    
YNO SMILES_CANONICAL CACTVS               3.385 "CO[C@H]1[C@H](O[C@H](CO)[C@H](O)[C@@H]1n2cc(nn2)c3scc(Cl)n3)Sc4cc(Br)cnc4C#N"                                                                                                                 
YNO SMILES           CACTVS               3.385 "CO[CH]1[CH](O[CH](CO)[CH](O)[CH]1n2cc(nn2)c3scc(Cl)n3)Sc4cc(Br)cnc4C#N"                                                                                                                       
YNO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1Sc2cc(cnc2C#N)Br)CO)O)n3cc(nn3)c4nc(cs4)Cl"                                                                                                                
YNO SMILES           "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1Sc2cc(cnc2C#N)Br)CO)O)n3cc(nn3)c4nc(cs4)Cl"                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           YNO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-bromanyl-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-4-[4-(4-chloranyl-1,3-thiazol-2-yl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3-methoxy-5-oxidanyl-oxan-2-yl]sulfanyl-pyridine-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNO "Create component" 2023-12-07 PDBE 
YNO "Initial release"  2024-12-18 RCSB 
# 
