data_YMO
# 
_chem_comp.id                                    YMO 
_chem_comp.name                                  "(8S)-2-{[(3-fluoro[1,1'-biphenyl]-4-yl)methyl]amino}-5-propyl[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 F N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-09 
_chem_comp.pdbx_modified_date                    2024-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FU4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMO C10 C1  C 0 1 Y N N N N N 7.412  12.970 26.670 8.132  -1.444 -0.615 C10 YMO 1  
YMO C11 C2  C 0 1 Y N N N N N 8.502  13.519 27.313 8.883  -0.920 0.422  C11 YMO 2  
YMO C13 C3  C 0 1 Y N N N N N 9.760  13.378 25.274 6.967  0.267  1.230  C13 YMO 3  
YMO C16 C4  C 0 1 Y N N N N N 11.495 11.757 18.682 -1.572 0.188  0.212  C16 YMO 4  
YMO C19 C5  C 0 1 N N N N N N 14.777 12.776 18.541 -4.737 1.588  -0.368 C19 YMO 5  
YMO C21 C6  C 0 1 N N N N N N 15.165 14.177 18.606 -5.988 1.013  -0.062 C21 YMO 6  
YMO C22 C7  C 0 1 N N N N N N 14.246 15.182 18.715 -6.037 -0.207 0.519  C22 YMO 7  
YMO C24 C8  C 0 1 Y N N N N N 12.485 13.576 18.747 -3.665 -0.310 0.505  C24 YMO 8  
YMO C26 C9  C 0 1 N N N N N N 14.571 16.646 18.810 -7.369 -0.831 0.850  C26 YMO 9  
YMO C27 C10 C 0 1 N N N N N N 14.386 17.455 17.532 -7.795 -1.759 -0.289 C27 YMO 10 
YMO C28 C11 C 0 1 N N N N N N 15.315 17.063 16.387 -9.147 -2.392 0.047  C28 YMO 11 
YMO C12 C12 C 0 1 Y N N N N N 9.676  13.718 26.619 8.302  -0.067 1.342  C12 YMO 12 
YMO C14 C13 C 0 1 N N N N N N 9.042  11.360 18.928 0.643  1.155  -0.319 C14 YMO 13 
YMO C2  C14 C 0 1 Y N N N N N 7.783  12.256 20.968 2.679  -0.072 -1.107 C2  YMO 14 
YMO C3  C15 C 0 1 Y N N N N N 8.931  11.724 20.410 2.099  0.787  -0.188 C3  YMO 15 
YMO C4  C16 C 0 1 Y N N N N N 10.007 11.549 21.285 2.852  1.309  0.848  C4  YMO 16 
YMO C5  C17 C 0 1 Y N N N N N 9.928  11.909 22.624 4.185  0.975  0.973  C5  YMO 17 
YMO C6  C18 C 0 1 Y N N N N N 8.759  12.446 23.159 4.775  0.112  0.051  C6  YMO 18 
YMO C7  C19 C 0 1 Y N N N N N 7.669  12.625 22.298 4.014  -0.412 -0.991 C7  YMO 19 
YMO C8  C20 C 0 1 Y N N N N N 8.667  12.822 24.603 6.208  -0.249 0.181  C8  YMO 20 
YMO C9  C21 C 0 1 Y N N N N N 7.490  12.629 25.327 6.798  -1.112 -0.740 C9  YMO 21 
YMO F1  F1  F 0 1 N N N N N N 6.717  12.443 20.162 1.937  -0.583 -2.115 F1  YMO 22 
YMO N15 N1  N 0 1 N N N N N N 10.396 10.883 18.672 -0.184 0.074  0.223  N15 YMO 23 
YMO N17 N2  N 0 1 Y N N N N N 12.757 11.367 18.582 -2.248 1.212  -0.256 N17 YMO 24 
YMO N18 N3  N 0 1 Y N N N N N 13.390 12.598 18.603 -3.607 0.917  -0.079 N18 YMO 25 
YMO N23 N4  N 0 1 N N N N N N 12.905 14.876 18.798 -4.883 -0.874 0.805  N23 YMO 26 
YMO N25 N5  N 0 1 Y N N N N N 11.258 13.104 18.798 -2.428 -0.731 0.672  N25 YMO 27 
YMO O20 O1  O 0 1 N N N N N N 15.518 11.796 18.450 -4.680 2.687  -0.892 O20 YMO 28 
YMO H33 H1  H 0 1 N N N N N N 6.494  12.805 27.214 8.591  -2.109 -1.331 H33 YMO 29 
YMO H34 H2  H 0 1 N N N N N N 8.436  13.792 28.356 9.928  -1.179 0.513  H34 YMO 30 
YMO H36 H3  H 0 1 N N N N N N 10.683 13.546 24.739 6.514  0.933  1.949  H36 YMO 31 
YMO H40 H4  H 0 1 N N N N N N 16.214 14.431 18.567 -6.901 1.543  -0.289 H40 YMO 32 
YMO H43 H5  H 0 1 N N N N N N 13.923 17.085 19.583 -7.282 -1.404 1.773  H43 YMO 33 
YMO H42 H6  H 0 1 N N N N N N 15.623 16.738 19.117 -8.115 -0.047 0.979  H42 YMO 34 
YMO H45 H7  H 0 1 N N N N N N 13.348 17.324 17.191 -7.882 -1.186 -1.212 H45 YMO 35 
YMO H44 H8  H 0 1 N N N N N N 14.563 18.514 17.769 -7.049 -2.543 -0.417 H44 YMO 36 
YMO H48 H9  H 0 1 N N N N N N 15.109 17.698 15.513 -9.060 -2.965 0.970  H48 YMO 37 
YMO H47 H10 H 0 1 N N N N N N 16.361 17.199 16.700 -9.893 -1.608 0.176  H47 YMO 38 
YMO H46 H11 H 0 1 N N N N N N 15.146 16.009 16.122 -9.450 -3.053 -0.764 H46 YMO 39 
YMO H35 H12 H 0 1 N N N N N N 10.534 14.140 27.122 8.892  0.338  2.150  H35 YMO 40 
YMO H38 H13 H 0 1 N N N N N N 8.317  10.569 18.684 0.450  2.074  0.236  H38 YMO 41 
YMO H37 H14 H 0 1 N N N N N N 8.838  12.248 18.311 0.400  1.307  -1.370 H37 YMO 42 
YMO H29 H15 H 0 1 N N N N N N 10.925 11.122 20.909 2.395  1.978  1.562  H29 YMO 43 
YMO H30 H16 H 0 1 N N N N N N 10.788 11.770 23.262 4.771  1.384  1.782  H30 YMO 44 
YMO H31 H17 H 0 1 N N N N N N 6.747  13.048 22.668 4.466  -1.082 -1.708 H31 YMO 45 
YMO H32 H18 H 0 1 N N N N N N 6.626  12.208 24.835 6.215  -1.515 -1.555 H32 YMO 46 
YMO H39 H19 H 0 1 N N N N N N 10.584 10.185 19.362 0.235  -0.720 0.590  H39 YMO 47 
YMO H41 H20 H 0 1 N N N N N N 12.234 15.611 18.896 -4.921 -1.749 1.221  H41 YMO 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMO F1  C2  SING N N 1  
YMO C2  C3  DOUB Y N 2  
YMO C2  C7  SING Y N 3  
YMO C3  C4  SING Y N 4  
YMO C3  C14 SING N N 5  
YMO C4  C5  DOUB Y N 6  
YMO C5  C6  SING Y N 7  
YMO C6  C7  DOUB Y N 8  
YMO C6  C8  SING N N 9  
YMO C8  C9  DOUB Y N 10 
YMO C8  C13 SING Y N 11 
YMO C9  C10 SING Y N 12 
YMO C10 C11 DOUB Y N 13 
YMO C11 C12 SING Y N 14 
YMO C12 C13 DOUB Y N 15 
YMO C14 N15 SING N N 16 
YMO N15 C16 SING N N 17 
YMO C16 N17 DOUB Y N 18 
YMO C16 N25 SING Y N 19 
YMO N17 N18 SING Y N 20 
YMO N18 C19 SING N N 21 
YMO N18 C24 SING Y N 22 
YMO C19 O20 DOUB N N 23 
YMO C19 C21 SING N N 24 
YMO C21 C22 DOUB N N 25 
YMO C22 N23 SING N N 26 
YMO C22 C26 SING N N 27 
YMO N23 C24 SING N N 28 
YMO C24 N25 DOUB Y N 29 
YMO C26 C27 SING N N 30 
YMO C27 C28 SING N N 31 
YMO C10 H33 SING N N 32 
YMO C11 H34 SING N N 33 
YMO C13 H36 SING N N 34 
YMO C21 H40 SING N N 35 
YMO C26 H43 SING N N 36 
YMO C26 H42 SING N N 37 
YMO C27 H45 SING N N 38 
YMO C27 H44 SING N N 39 
YMO C28 H48 SING N N 40 
YMO C28 H47 SING N N 41 
YMO C28 H46 SING N N 42 
YMO C12 H35 SING N N 43 
YMO C14 H38 SING N N 44 
YMO C14 H37 SING N N 45 
YMO C4  H29 SING N N 46 
YMO C5  H30 SING N N 47 
YMO C7  H31 SING N N 48 
YMO C9  H32 SING N N 49 
YMO N15 H39 SING N N 50 
YMO N23 H41 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMO SMILES           ACDLabs              12.01 "Fc1cc(ccc1CNc1nc2NC(=CC(=O)n2n1)CCC)c1ccccc1"                                                                                                         
YMO InChI            InChI                1.06  "InChI=1S/C21H20FN5O/c1-2-6-17-12-19(28)27-21(24-17)25-20(26-27)23-13-16-10-9-15(11-18(16)22)14-7-4-3-5-8-14/h3-5,7-12H,2,6,13H2,1H3,(H2,23,24,25,26)" 
YMO InChIKey         InChI                1.06  KXQLQLZELJLZEP-UHFFFAOYSA-N                                                                                                                            
YMO SMILES_CANONICAL CACTVS               3.385 "CCCC1=CC(=O)n2nc(NCc3ccc(cc3F)c4ccccc4)nc2N1"                                                                                                         
YMO SMILES           CACTVS               3.385 "CCCC1=CC(=O)n2nc(NCc3ccc(cc3F)c4ccccc4)nc2N1"                                                                                                         
YMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1=CC(=O)n2c(nc(n2)NCc3ccc(cc3F)c4ccccc4)N1"                                                                                                       
YMO SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1=CC(=O)n2c(nc(n2)NCc3ccc(cc3F)c4ccccc4)N1"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YMO "SYSTEMATIC NAME" ACDLabs              12.01 "(8S)-2-{[(3-fluoro[1,1'-biphenyl]-4-yl)methyl]amino}-5-propyl[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one" 
YMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2-fluoranyl-4-phenyl-phenyl)methylamino]-5-propyl-4~{H}-[1,2,4]triazolo[1,5-a]pyrimidin-7-one"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMO "Create component" 2023-02-09 RCSB 
YMO "Initial release"  2024-02-21 RCSB 
# 
