data_XGO
# 
_chem_comp.id                                    XGO 
_chem_comp.name                                  "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H30 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.576 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XGO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G36 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XGO C10 C1  C 0 1 N N N N N N -10.242 12.864 50.619 2.525  -0.558 -0.025 C10 XGO 1  
XGO C15 C2  C 0 1 N N N N N N -10.668 13.491 53.103 4.403  -1.811 1.052  C15 XGO 2  
XGO C16 C3  C 0 1 Y N N N N N -9.238  13.207 53.523 5.356  -0.726 0.740  C16 XGO 3  
XGO C18 C4  C 0 1 Y N N N N N -8.952  11.910 53.969 6.503  -0.557 1.528  C18 XGO 4  
XGO C19 C5  C 0 1 Y N N N N N -7.687  11.524 54.370 7.390  0.441  1.252  C19 XGO 5  
XGO C20 C6  C 0 1 Y N N N N N -8.227  14.219 53.458 5.114  0.119  -0.336 C20 XGO 6  
XGO C21 C7  C 0 1 Y N N N N N -6.901  13.807 53.900 6.020  1.143  -0.625 C21 XGO 7  
XGO C22 C8  C 0 1 Y N N N N N -6.646  12.461 54.360 7.163  1.302  0.181  C22 XGO 8  
XGO C26 C9  C 0 1 N N N N N N -13.627 9.360  47.649 -3.151 -2.434 -0.876 C26 XGO 9  
XGO C27 C10 C 0 1 Y N N N N N -12.844 8.993  46.395 -4.165 -1.429 -0.482 C27 XGO 10 
XGO N1  N1  N 0 1 N N N N N N -13.026 9.676  48.837 -1.862 -2.069 -1.021 N1  XGO 11 
XGO C2  C11 C 0 1 N N N N N N -13.862 10.046 50.021 -0.765 -2.965 -1.406 C2  XGO 12 
XGO C3  C12 C 0 1 N N S N N N -12.900 10.960 50.803 0.544  -2.261 -1.007 C3  XGO 13 
XGO C4  C13 C 0 1 N N R N N N -11.429 10.611 50.308 0.183  -0.756 -1.061 C4  XGO 14 
XGO C5  C14 C 0 1 N N N N N N -11.573 9.666  49.121 -1.335 -0.716 -0.820 C5  XGO 15 
XGO C6  C15 C 0 1 N N S N N N -12.676 12.414 50.274 0.717  -2.088 0.508  C6  XGO 16 
XGO C7  C16 C 0 1 N N R N N N -11.246 12.047 49.780 1.006  -0.593 0.228  C7  XGO 17 
XGO C8  C17 C 0 1 N N N N N N -12.475 13.531 51.304 2.045  -2.643 1.050  C8  XGO 18 
XGO N9  N2  N 0 1 N N N N N N -11.072 13.301 51.754 3.103  -1.682 0.721  N9  XGO 19 
XGO O17 O1  O 0 1 N N N N N N -11.524 13.862 53.944 4.792  -2.820 1.607  O17 XGO 20 
XGO N23 N3  N 0 1 Y N N N N N -5.274  12.379 54.697 7.849  2.372  -0.338 N23 XGO 21 
XGO N24 N4  N 0 1 Y N N N N N -4.742  13.663 54.420 7.105  2.833  -1.434 N24 XGO 22 
XGO N25 N5  N 0 1 Y N N N N N -5.661  14.484 53.977 6.058  2.101  -1.582 N25 XGO 23 
XGO O28 O2  O 0 1 N N N N N N -14.864 9.431  47.624 -3.481 -3.588 -1.068 O28 XGO 24 
XGO N29 N6  N 0 1 Y N N N N N -12.853 7.704  45.851 -3.797 -0.170 -0.273 N29 XGO 25 
XGO C30 C18 C 0 1 Y N N N N N -12.094 7.567  44.726 -4.669 0.756  0.078  C30 XGO 26 
XGO C31 C19 C 0 1 Y N N N N N -12.146 10.065 45.824 -5.496 -1.811 -0.339 C31 XGO 27 
XGO C32 C20 C 0 1 Y N N N N N -11.385 9.850  44.671 -6.437 -0.861 0.030  C32 XGO 28 
XGO C33 C21 C 0 1 Y N N N N N -11.358 8.572  44.113 -6.015 0.439  0.244  C33 XGO 29 
XGO O34 O3  O 0 1 N N N N N N -11.951 6.407  44.077 -4.250 2.030  0.281  O34 XGO 30 
XGO C35 C22 C 0 1 N N N N N N -12.125 5.205  44.796 -2.857 2.292  0.096  C35 XGO 31 
XGO C36 C23 C 0 1 N N N N N N -11.839 4.126  43.750 -2.576 3.771  0.367  C36 XGO 32 
XGO C37 C24 C 0 1 N N N N N N -10.491 4.071  43.030 -1.117 4.230  0.335  C37 XGO 33 
XGO C38 C25 C 0 1 N N N N N N -10.806 3.061  44.115 -2.066 4.619  -0.800 C38 XGO 34 
XGO C39 C26 C 0 1 N N N N N N -10.609 8.302  42.909 -7.003 1.504  0.646  C39 XGO 35 
XGO C40 C27 C 0 1 N N N N N N -9.713  9.422  42.531 -7.769 1.299  1.955  C40 XGO 36 
XGO C41 C28 C 0 1 N N N N N N -10.973 9.217  41.759 -8.488 1.137  0.615  C41 XGO 37 
XGO H48 H1  H 0 1 N N N N N N -9.402  12.239 50.956 2.729  -0.673 -1.090 H48 XGO 38 
XGO H49 H2  H 0 1 N N N N N N -9.855  13.724 50.053 2.942  0.382  0.335  H49 XGO 39 
XGO H50 H3  H 0 1 N N N N N N -9.751  11.184 54.001 6.685  -1.221 2.360  H50 XGO 40 
XGO H51 H4  H 0 1 N N N N N N -7.503  10.509 54.688 8.271  0.564  1.865  H51 XGO 41 
XGO H52 H5  H 0 1 N N N N N N -8.433  15.219 53.106 4.233  -0.016 -0.945 H52 XGO 42 
XGO H43 H6  H 0 1 N N N N N N -14.771 10.585 49.718 -0.854 -3.913 -0.877 H43 XGO 43 
XGO H42 H7  H 0 1 N N N N N N -14.141 9.159  50.609 -0.783 -3.135 -2.483 H42 XGO 44 
XGO H12 H8  H 0 1 N N N N N N -13.015 10.901 51.895 1.425  -2.572 -1.569 H12 XGO 45 
XGO H11 H9  H 0 1 N N N N N N -10.733 10.296 51.099 0.525  -0.203 -1.935 H11 XGO 46 
XGO H44 H10 H 0 1 N N N N N N -11.232 8.654  49.382 -1.803 -0.030 -1.526 H44 XGO 47 
XGO H45 H11 H 0 1 N N N N N N -11.002 10.034 48.256 -1.538 -0.389 0.200  H45 XGO 48 
XGO H14 H12 H 0 1 N N N N N N -13.360 12.686 49.457 -0.163 -2.306 1.113  H14 XGO 49 
XGO H13 H13 H 0 1 N N N N N N -11.106 12.123 48.692 0.636  0.136  0.949  H13 XGO 50 
XGO H47 H14 H 0 1 N N N N N N -12.588 14.523 50.843 1.980  -2.763 2.132  H47 XGO 51 
XGO H46 H15 H 0 1 N N N N N N -13.183 13.433 52.141 2.261  -3.604 0.584  H46 XGO 52 
XGO H53 H16 H 0 1 N N N N N N -4.784  11.584 55.055 8.686  2.737  -0.011 H53 XGO 53 
XGO H54 H17 H 0 1 N N N N N N -12.195 11.047 46.270 -5.792 -2.835 -0.513 H54 XGO 54 
XGO H55 H18 H 0 1 N N N N N N -10.828 10.659 44.221 -7.476 -1.131 0.148  H55 XGO 55 
XGO H56 H19 H 0 1 N N N N N N -11.415 5.140  45.634 -2.277 1.679  0.786  H56 XGO 56 
XGO H57 H20 H 0 1 N N N N N N -13.153 5.120  45.179 -2.576 2.050  -0.929 H57 XGO 57 
XGO H58 H21 H 0 1 N N N N N N -12.707 3.776  43.172 -3.240 4.252  1.086  H58 XGO 58 
XGO H60 H22 H 0 1 N N N N N N -10.442 3.751  41.979 -0.821 5.013  1.033  H60 XGO 59 
XGO H59 H23 H 0 1 N N N N N N -9.740  4.854  43.210 -0.357 3.478  0.121  H59 XGO 60 
XGO H61 H24 H 0 1 N N N N N N -10.283 3.112  45.081 -1.931 4.122  -1.762 H61 XGO 61 
XGO H62 H25 H 0 1 N N N N N N -10.985 2.009  43.850 -2.394 5.657  -0.850 H62 XGO 62 
XGO H63 H26 H 0 1 N N N N N N -10.300 7.272  42.677 -6.731 2.524  0.378  H63 XGO 63 
XGO H64 H27 H 0 1 N N N N N N -9.615  10.292 43.197 -7.558 0.394  2.525  H64 XGO 64 
XGO H65 H28 H 0 1 N N N N N N -8.742  9.210  42.059 -8.000 2.184  2.547  H65 XGO 65 
XGO H67 H29 H 0 1 N N N N N N -10.933 8.846  40.724 -9.193 1.917  0.325  H67 XGO 66 
XGO H66 H30 H 0 1 N N N N N N -11.806 9.929  41.861 -8.751 0.126  0.303  H66 XGO 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XGO N1  C2  SING N N 1  
XGO N1  C5  SING N N 2  
XGO N1  C26 SING N N 3  
XGO C2  C3  SING N N 4  
XGO C3  C4  SING N N 5  
XGO C3  C6  SING N N 6  
XGO C4  C5  SING N N 7  
XGO C4  C7  SING N N 8  
XGO C6  C7  SING N N 9  
XGO C6  C8  SING N N 10 
XGO C7  C10 SING N N 11 
XGO C8  N9  SING N N 12 
XGO N9  C10 SING N N 13 
XGO N9  C15 SING N N 14 
XGO C15 C16 SING N N 15 
XGO C15 O17 DOUB N N 16 
XGO C16 C18 DOUB Y N 17 
XGO C16 C20 SING Y N 18 
XGO C18 C19 SING Y N 19 
XGO C19 C22 DOUB Y N 20 
XGO C20 C21 DOUB Y N 21 
XGO C21 C22 SING Y N 22 
XGO C21 N25 SING Y N 23 
XGO C22 N23 SING Y N 24 
XGO N23 N24 SING Y N 25 
XGO N24 N25 DOUB Y N 26 
XGO C26 C27 SING N N 27 
XGO C26 O28 DOUB N N 28 
XGO C27 N29 DOUB Y N 29 
XGO C27 C31 SING Y N 30 
XGO N29 C30 SING Y N 31 
XGO C30 C33 DOUB Y N 32 
XGO C30 O34 SING N N 33 
XGO C31 C32 DOUB Y N 34 
XGO C32 C33 SING Y N 35 
XGO C33 C39 SING N N 36 
XGO O34 C35 SING N N 37 
XGO C35 C36 SING N N 38 
XGO C36 C37 SING N N 39 
XGO C36 C38 SING N N 40 
XGO C37 C38 SING N N 41 
XGO C39 C40 SING N N 42 
XGO C39 C41 SING N N 43 
XGO C40 C41 SING N N 44 
XGO C10 H48 SING N N 45 
XGO C10 H49 SING N N 46 
XGO C18 H50 SING N N 47 
XGO C19 H51 SING N N 48 
XGO C20 H52 SING N N 49 
XGO C2  H43 SING N N 50 
XGO C2  H42 SING N N 51 
XGO C3  H12 SING N N 52 
XGO C4  H11 SING N N 53 
XGO C5  H44 SING N N 54 
XGO C5  H45 SING N N 55 
XGO C6  H14 SING N N 56 
XGO C7  H13 SING N N 57 
XGO C8  H47 SING N N 58 
XGO C8  H46 SING N N 59 
XGO N23 H53 SING N N 60 
XGO C31 H54 SING N N 61 
XGO C32 H55 SING N N 62 
XGO C35 H56 SING N N 63 
XGO C35 H57 SING N N 64 
XGO C36 H58 SING N N 65 
XGO C37 H60 SING N N 66 
XGO C37 H59 SING N N 67 
XGO C38 H61 SING N N 68 
XGO C38 H62 SING N N 69 
XGO C39 H63 SING N N 70 
XGO C40 H64 SING N N 71 
XGO C40 H65 SING N N 72 
XGO C41 H67 SING N N 73 
XGO C41 H66 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XGO SMILES           ACDLabs              12.01 "O=C(c1ccc(C2CC2)c(OCC2CC2)n1)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                          
XGO InChI            InChI                1.06  "InChI=1S/C28H30N6O3/c35-27(17-5-7-23-25(9-17)31-32-30-23)33-10-19-20(11-33)22-13-34(12-21(19)22)28(36)24-8-6-18(16-3-4-16)26(29-24)37-14-15-1-2-15/h5-9,15-16,19-22H,1-4,10-14H2,(H,30,31,32)" 
XGO InChIKey         InChI                1.06  DBRWJWIKNXFOGS-UHFFFAOYSA-N                                                                                                                                                                     
XGO SMILES_CANONICAL CACTVS               3.385 "O=C(N1C[C@@H]2[C@H](C1)[C@H]3CN(C[C@@H]23)C(=O)c4ccc(C5CC5)c(OCC6CC6)n4)c7ccc8[nH]nnc8c7"                                                                                                      
XGO SMILES           CACTVS               3.385 "O=C(N1C[CH]2[CH](C1)[CH]3CN(C[CH]23)C(=O)c4ccc(C5CC5)c(OCC6CC6)n4)c7ccc8[nH]nnc8c7"                                                                                                            
XGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6ccc(c(n6)OCC7CC7)C8CC8)nn[nH]2"                                                                                                    
XGO SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6ccc(c(n6)OCC7CC7)C8CC8)nn[nH]2"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XGO "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]methanone"      
XGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{S},2~{R},6~{S},7~{R})-9-[5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XGO "Create component" 2023-06-06 RCSB 
XGO "Initial release"  2024-12-18 RCSB 
# 
