data_X3O
# 
_chem_comp.id                                    X3O 
_chem_comp.name                                  "2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H21 F9 N3 O2 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2024-09-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        629.478 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8SZN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3O C11 C1  C 0 1 Y N N N N N -85.380 -64.965 110.449 5.770  1.764  0.554  C11 X3O 1  
X3O C13 C2  C 0 1 N N N N N N -88.157 -66.631 106.947 1.601  1.246  1.936  C13 X3O 2  
X3O C14 C3  C 0 1 N N N N N N -86.845 -67.250 107.420 0.147  1.002  2.246  C14 X3O 3  
X3O C16 C4  C 0 1 N N N N N N -85.538 -68.726 108.919 -2.195 0.911  1.580  C16 X3O 4  
X3O C17 C5  C 0 1 N N N N N N -85.748 -70.107 109.525 -3.031 1.144  0.320  C17 X3O 5  
X3O C19 C6  C 0 1 Y N N N N N -86.427 -72.777 108.793 -5.573 1.162  -0.851 C19 X3O 6  
X3O C20 C7  C 0 1 Y N N N N N -85.949 -74.070 108.718 -6.953 1.042  -0.963 C20 X3O 7  
X3O C21 C8  C 0 1 N N N N N N -84.486 -74.305 108.314 -7.775 0.638  0.234  C21 X3O 8  
X3O C25 C9  C 0 1 Y N N N N N -86.794 -75.113 109.082 -7.570 1.293  -2.172 C25 X3O 9  
X3O C26 C10 C 0 1 Y N N N N N -88.089 -74.845 109.512 -6.817 1.663  -3.271 C26 X3O 10 
X3O C27 C11 C 0 1 Y N N N N N -88.561 -73.542 109.571 -5.443 1.784  -3.164 C27 X3O 11 
X3O C28 C12 C 0 1 Y N N N N N -87.722 -72.502 109.209 -4.819 1.535  -1.957 C28 X3O 12 
X3O C03 C13 C 0 1 Y N N N N N -87.253 -64.806 109.151 3.710  0.999  -0.140 C03 X3O 13 
X3O C04 C14 C 0 1 Y N N N N N -87.001 -63.464 108.892 4.210  0.664  -1.384 C04 X3O 14 
X3O C05 C15 C 0 1 Y N N N N N -85.879 -62.858 109.451 5.551  0.888  -1.656 C05 X3O 15 
X3O C06 C16 C 0 1 Y N N N N N -85.043 -63.640 110.242 6.341  1.449  -0.665 C06 X3O 16 
X3O C07 C17 C 0 1 N N N N N N -83.786 -63.070 110.912 7.804  1.712  -0.913 C07 X3O 17 
X3O C30 C18 C 0 1 N N N N N N -87.799 -65.685 105.806 1.908  2.739  2.072  C30 X3O 18 
X3O C31 C19 C 0 1 N N N N N N -89.169 -67.699 106.530 2.471  0.456  2.916  C31 X3O 19 
X3O C32 C20 C 0 1 Y N N N N N -90.057 -64.443 108.020 1.596  -1.065 0.071  C32 X3O 20 
X3O C34 C21 C 0 1 Y N N N N N -92.135 -63.650 108.593 0.868  -3.022 1.043  C34 X3O 21 
X3O C35 C22 C 0 1 Y N N N N N -92.072 -62.744 107.560 1.042  -3.719 -0.138 C35 X3O 22 
X3O C36 C23 C 0 1 N N N N N N -93.247 -61.815 107.366 0.721  -5.190 -0.210 C36 X3O 23 
X3O C40 C24 C 0 1 Y N N N N N -90.967 -62.676 106.726 1.520  -3.049 -1.254 C40 X3O 24 
X3O C41 C25 C 0 1 Y N N N N N -89.925 -63.548 106.968 1.800  -1.696 -1.141 C41 X3O 25 
X3O F08 F1  F 0 1 N N N N N N -84.081 -61.808 111.354 7.964  2.999  -1.438 F08 X3O 26 
X3O F09 F2  F 0 1 N N N N N N -82.729 -63.037 110.036 8.507  1.610  0.292  F09 X3O 27 
X3O F10 F3  F 0 1 N N N N N N -83.442 -63.860 111.982 8.299  0.772  -1.823 F10 X3O 28 
X3O F22 F4  F 0 1 N N N N N N -83.694 -73.536 109.125 -7.600 1.576  1.258  F22 X3O 29 
X3O F23 F5  F 0 1 N N N N N N -84.155 -75.614 108.516 -9.126 0.586  -0.124 F23 X3O 30 
X3O F24 F6  F 0 1 N N N N N N -84.198 -73.930 107.041 -7.361 -0.621 0.680  F24 X3O 31 
X3O F37 F7  F 0 1 N N N N N N -93.617 -61.889 106.052 1.873  -5.901 -0.563 F37 X3O 32 
X3O F38 F8  F 0 1 N N N N N N -92.859 -60.560 107.734 0.265  -5.630 1.037  F38 X3O 33 
X3O F39 F9  F 0 1 N N N N N N -94.263 -62.208 108.190 -0.272 -5.404 -1.171 F39 X3O 34 
X3O N12 N1  N 0 1 Y N N N N N -86.444 -65.514 109.912 4.492  1.532  0.780  N12 X3O 35 
X3O N15 N2  N 0 1 N N N N N N -86.831 -68.203 108.511 -0.781 1.148  1.279  N15 X3O 36 
X3O N33 N3  N 0 1 Y N N N N N -91.131 -64.461 108.785 1.146  -1.735 1.114  N33 X3O 37 
X3O O01 O1  O 0 1 N N N N N N -89.217 -66.624 109.428 1.118  1.470  -0.715 O01 X3O 38 
X3O O29 O2  O 0 1 N N N N N N -85.828 -66.904 106.924 -0.188 0.673  3.364  O29 X3O 39 
X3O P02 P1  P 0 1 N N R N N N -88.732 -65.673 108.433 1.960  0.705  0.233  P02 X3O 40 
X3O S18 S1  S 0 1 N N N N N N -85.337 -71.406 108.331 -4.782 0.850  0.692  S18 X3O 41 
X3O H1  H1  H 0 1 N N N N N N -84.743 -65.571 111.076 6.379  2.202  1.331  H1  X3O 42 
X3O H2  H2  H 0 1 N N N N N N -84.875 -68.801 108.045 -2.520 1.595  2.364  H2  X3O 43 
X3O H3  H3  H 0 1 N N N N N N -85.086 -68.057 109.666 -2.327 -0.117 1.918  H3  X3O 44 
X3O H4  H4  H 0 1 N N N N N N -86.801 -70.213 109.824 -2.899 2.172  -0.018 H4  X3O 45 
X3O H5  H5  H 0 1 N N N N N N -85.103 -70.214 110.410 -2.706 0.460  -0.463 H5  X3O 46 
X3O H6  H6  H 0 1 N N N N N N -86.444 -76.133 109.031 -8.643 1.200  -2.260 H6  X3O 47 
X3O H7  H7  H 0 1 N N N N N N -88.734 -75.660 109.803 -7.302 1.858  -4.216 H7  X3O 48 
X3O H8  H8  H 0 1 N N N N N N -89.571 -73.341 109.896 -4.858 2.074  -4.024 H8  X3O 49 
X3O H9  H9  H 0 1 N N N N N N -88.074 -71.482 109.250 -3.747 1.630  -1.874 H9  X3O 50 
X3O H10 H10 H 0 1 N N N N N N -87.670 -62.896 108.262 3.565  0.228  -2.132 H10 X3O 51 
X3O H11 H11 H 0 1 N N N N N N -85.664 -61.814 109.276 5.969  0.635  -2.619 H11 X3O 52 
X3O H12 H12 H 0 1 N N N N N N -87.071 -64.941 106.161 1.694  3.063  3.091  H12 X3O 53 
X3O H13 H13 H 0 1 N N N N N N -87.361 -66.260 104.977 2.960  2.916  1.849  H13 X3O 54 
X3O H14 H14 H 0 1 N N N N N N -88.707 -65.172 105.457 1.288  3.302  1.374  H14 X3O 55 
X3O H15 H15 H 0 1 N N N N N N -89.390 -68.351 107.388 2.253  -0.608 2.819  H15 X3O 56 
X3O H16 H16 H 0 1 N N N N N N -90.096 -67.213 106.191 3.523  0.633  2.692  H16 X3O 57 
X3O H17 H17 H 0 1 N N N N N N -88.750 -68.301 105.711 2.257  0.779  3.934  H17 X3O 58 
X3O H18 H18 H 0 1 N N N N N N -93.002 -63.690 109.235 0.501  -3.538 1.918  H18 X3O 59 
X3O H19 H19 H 0 1 N N N N N N -90.923 -61.965 105.914 1.670  -3.569 -2.188 H19 X3O 60 
X3O H20 H20 H 0 1 N N N N N N -89.034 -63.534 106.357 2.174  -1.143 -1.990 H20 X3O 61 
X3O H21 H21 H 0 1 N N N N N N -87.675 -68.489 108.964 -0.513 1.411  0.385  H21 X3O 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3O C30 C13 SING N N 1  
X3O F37 C36 SING N N 2  
X3O C31 C13 SING N N 3  
X3O C40 C41 DOUB Y N 4  
X3O C40 C35 SING Y N 5  
X3O O29 C14 DOUB N N 6  
X3O C13 C14 SING N N 7  
X3O C13 P02 SING N N 8  
X3O C41 C32 SING Y N 9  
X3O F24 C21 SING N N 10 
X3O C36 C35 SING N N 11 
X3O C36 F38 SING N N 12 
X3O C36 F39 SING N N 13 
X3O C14 N15 SING N N 14 
X3O C35 C34 DOUB Y N 15 
X3O C32 P02 SING N N 16 
X3O C32 N33 DOUB Y N 17 
X3O C21 F23 SING N N 18 
X3O C21 C20 SING N N 19 
X3O C21 F22 SING N N 20 
X3O S18 C19 SING N N 21 
X3O S18 C17 SING N N 22 
X3O P02 C03 SING N N 23 
X3O P02 O01 DOUB N N 24 
X3O N15 C16 SING N N 25 
X3O C34 N33 SING Y N 26 
X3O C20 C19 DOUB Y N 27 
X3O C20 C25 SING Y N 28 
X3O C19 C28 SING Y N 29 
X3O C04 C03 DOUB Y N 30 
X3O C04 C05 SING Y N 31 
X3O C16 C17 SING N N 32 
X3O C25 C26 DOUB Y N 33 
X3O C03 N12 SING Y N 34 
X3O C28 C27 DOUB Y N 35 
X3O C05 C06 DOUB Y N 36 
X3O C26 C27 SING Y N 37 
X3O N12 C11 DOUB Y N 38 
X3O F09 C07 SING N N 39 
X3O C06 C11 SING Y N 40 
X3O C06 C07 SING N N 41 
X3O C07 F08 SING N N 42 
X3O C07 F10 SING N N 43 
X3O C11 H1  SING N N 44 
X3O C16 H2  SING N N 45 
X3O C16 H3  SING N N 46 
X3O C17 H4  SING N N 47 
X3O C17 H5  SING N N 48 
X3O C25 H6  SING N N 49 
X3O C26 H7  SING N N 50 
X3O C27 H8  SING N N 51 
X3O C28 H9  SING N N 52 
X3O C04 H10 SING N N 53 
X3O C05 H11 SING N N 54 
X3O C30 H12 SING N N 55 
X3O C30 H13 SING N N 56 
X3O C30 H14 SING N N 57 
X3O C31 H15 SING N N 58 
X3O C31 H16 SING N N 59 
X3O C31 H17 SING N N 60 
X3O C34 H18 SING N N 61 
X3O C40 H19 SING N N 62 
X3O C41 H20 SING N N 63 
X3O N15 H21 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3O SMILES           ACDLabs              12.01 "O=P(c1ccc(cn1)C(F)(F)F)(c1ccc(cn1)C(F)(F)F)C(C)(C)C(=O)NCCSc1ccccc1C(F)(F)F"                                                                                                              
X3O InChI            InChI                1.06  "InChI=1S/C25H21F9N3O2PS/c1-22(2,21(38)35-11-12-41-18-6-4-3-5-17(18)25(32,33)34)40(39,19-9-7-15(13-36-19)23(26,27)28)20-10-8-16(14-37-20)24(29,30)31/h3-10,13-14H,11-12H2,1-2H3,(H,35,38)" 
X3O InChIKey         InChI                1.06  YZQNSGLJZOYKHY-UHFFFAOYSA-N                                                                                                                                                                
X3O SMILES_CANONICAL CACTVS               3.385 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)[P@@](=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F"                                                                                                          
X3O SMILES           CACTVS               3.385 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)[P](=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F"                                                                                                            
X3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)P(=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F"                                                                                                              
X3O SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C(=O)NCCSc1ccccc1C(F)(F)F)P(=O)(c2ccc(cn2)C(F)(F)F)c3ccc(cn3)C(F)(F)F"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X3O "SYSTEMATIC NAME" ACDLabs              12.01 "2-{bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl}-2-methyl-N-(2-{[2-(trifluoromethyl)phenyl]sulfanyl}ethyl)propanamide" 
X3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-bis[5-(trifluoromethyl)pyridin-2-yl]phosphoryl-2-methyl-~{N}-[2-[2-(trifluoromethyl)phenyl]sulfanylethyl]propanamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3O "Create component" 2023-05-31 RCSB 
X3O "Initial release"  2024-09-18 RCSB 
# 
