data_VGO
# 
_chem_comp.id                                    VGO 
_chem_comp.name                                  "(3~{S},4~{S})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H11 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2024-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        177.155 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VGO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CQI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VGO C4  C1  C 0 1 N N N N N N -17.461 15.519 57.447 -1.807 0.893  -0.751 C4  VGO 1  
VGO C5  C2  C 0 1 N N N N N N -16.773 16.912 57.572 -1.635 -0.244 0.258  C5  VGO 2  
VGO C6  C3  C 0 1 N N S N N N -17.486 17.856 58.564 -0.212 -0.800 0.156  C6  VGO 3  
VGO N1  N1  N 0 1 N N N N N N -17.761 14.945 58.768 -0.828 1.951  -0.470 N1  VGO 4  
VGO C3  C4  C 0 1 N N N N N N -18.502 15.885 59.639 0.546  1.453  -0.608 C3  VGO 5  
VGO O1  O1  O 0 1 N N N N N N -17.597 19.147 61.245 2.375  -1.353 -0.033 O1  VGO 6  
VGO C1  C5  C 0 1 N N N N N N -18.315 18.193 60.888 2.192  -0.192 0.249  C1  VGO 7  
VGO O2  O2  O 0 1 N N N N N N -19.480 18.038 61.280 3.240  0.629  0.423  O2  VGO 8  
VGO C2  C6  C 0 1 N N S N N N -17.713 17.168 59.910 0.789  0.333  0.405  C2  VGO 9  
VGO O3  O3  O 0 1 N N N N N N -15.430 16.760 57.993 -1.860 0.252  1.579  O3  VGO 10 
VGO O4  O4  O 0 1 N N N N N N -16.924 17.609 56.355 -2.575 -1.282 -0.028 O4  VGO 11 
VGO O5  O5  O 0 1 N N N N N N -18.745 18.292 58.041 -0.003 -1.342 -1.149 O5  VGO 12 
VGO H1  H1  H 0 1 N N N N N N -18.400 15.633 56.885 -1.649 0.511  -1.760 H1  VGO 13 
VGO H2  H2  H 0 1 N N N N N N -16.790 14.836 56.905 -2.815 1.300  -0.672 H2  VGO 14 
VGO H3  H3  H 0 1 N N N N N N -16.836 18.728 58.730 -0.071 -1.581 0.903  H3  VGO 15 
VGO H4  H4  H 0 1 N N N N N N -18.314 14.121 58.642 -0.984 2.754  -1.062 H4  VGO 16 
VGO H6  H6  H 0 1 N N N N N N -19.450 16.150 59.148 0.693  1.068  -1.617 H6  VGO 17 
VGO H7  H7  H 0 1 N N N N N N -18.711 15.389 60.598 1.247  2.267  -0.424 H7  VGO 18 
VGO H8  H8  H 0 1 N N N N N N -19.712 18.744 61.872 4.121  0.247  0.312  H8  VGO 19 
VGO H9  H9  H 0 1 N N N N N N -16.728 16.875 60.304 0.655  0.720  1.415  H9  VGO 20 
VGO H10 H10 H 0 1 N N N N N N -15.407 16.284 58.815 -2.743 0.623  1.715  H10 VGO 21 
VGO H11 H11 H 0 1 N N N N N N -16.507 18.460 56.423 -3.498 -1.000 0.016  H11 VGO 22 
VGO H12 H12 H 0 1 N N N N N N -19.165 18.870 58.667 -0.607 -2.062 -1.377 H12 VGO 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VGO O4 C5  SING N N 1  
VGO C4 C5  SING N N 2  
VGO C4 N1  SING N N 3  
VGO C5 O3  SING N N 4  
VGO C5 C6  SING N N 5  
VGO O5 C6  SING N N 6  
VGO C6 C2  SING N N 7  
VGO N1 C3  SING N N 8  
VGO C3 C2  SING N N 9  
VGO C2 C1  SING N N 10 
VGO C1 O1  DOUB N N 11 
VGO C1 O2  SING N N 12 
VGO C4 H1  SING N N 13 
VGO C4 H2  SING N N 14 
VGO C6 H3  SING N N 15 
VGO N1 H4  SING N N 16 
VGO C3 H6  SING N N 17 
VGO C3 H7  SING N N 18 
VGO O2 H8  SING N N 19 
VGO C2 H9  SING N N 20 
VGO O3 H10 SING N N 21 
VGO O4 H11 SING N N 22 
VGO O5 H12 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VGO InChI            InChI                1.06  "InChI=1S/C6H11NO5/c8-4-3(5(9)10)1-7-2-6(4,11)12/h3-4,7-8,11-12H,1-2H2,(H,9,10)/t3-,4-/m0/s1" 
VGO InChIKey         InChI                1.06  VJJFPBNJYGLWRR-IMJSIDKUSA-N                                                                   
VGO SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@H](CNCC1(O)O)C(O)=O"                                                               
VGO SMILES           CACTVS               3.385 "O[CH]1[CH](CNCC1(O)O)C(O)=O"                                                                 
VGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H](C(CN1)(O)O)O)C(=O)O"                                                         
VGO SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(CN1)(O)O)O)C(=O)O"                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           VGO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},4~{S})-4,5,5-tris(oxidanyl)piperidine-3-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VGO "Create component" 2023-03-06 PDBE 
VGO "Initial release"  2024-01-10 RCSB 
# 
