data_UGO
# 
_chem_comp.id                                    UGO 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{6-[2-nitro-4-(pyrimidin-2-yl)anilino]hexyl}piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H32 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-18 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        462.519 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UGO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8E3J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UGO N1  N1  N 0  1 N N N -35.145 -30.368 -69.489 ? ? ? N1  UGO 1  
UGO N3  N2  N 1  1 N N N -43.167 -25.930 -64.229 ? ? ? N3  UGO 2  
UGO C4  C1  C 0  1 N N N -33.427 -28.746 -68.798 ? ? ? C4  UGO 3  
UGO C5  C2  C 0  1 N N N -36.076 -29.685 -69.051 ? ? ? C5  UGO 4  
UGO C6  C3  C 0  1 N N N -36.269 -29.862 -67.495 ? ? ? C6  UGO 5  
UGO C7  C4  C 0  1 N N N -37.597 -29.242 -66.891 ? ? ? C7  UGO 6  
UGO C8  C5  C 0  1 N N N -37.883 -29.653 -65.375 ? ? ? C8  UGO 7  
UGO C10 C6  C 0  1 N N N -40.416 -28.984 -65.389 ? ? ? C10 UGO 8  
UGO C13 C7  C 0  1 Y N N -44.499 -25.999 -66.396 ? ? ? C13 UGO 9  
UGO C15 C8  C 0  1 Y N N -45.926 -25.977 -68.447 ? ? ? C15 UGO 10 
UGO C17 C9  C 0  1 Y N N -48.028 -25.011 -69.853 ? ? ? C17 UGO 11 
UGO C20 C10 C 0  1 Y N N -42.732 -28.004 -67.420 ? ? ? C20 UGO 12 
UGO C21 C11 C 0  1 N N N -35.446 -31.771 -69.720 ? ? ? C21 UGO 13 
UGO C22 C12 C 0  1 N N S -34.340 -32.452 -70.514 ? ? ? C22 UGO 14 
UGO O1  O1  O 0  1 N N N -32.051 -32.889 -70.916 ? ? ? O1  UGO 15 
UGO C1  C13 C 0  1 N N R -33.043 -32.322 -69.923 ? ? ? C1  UGO 16 
UGO C2  C14 C 0  1 N N R -32.679 -30.948 -69.692 ? ? ? C2  UGO 17 
UGO O2  O2  O 0  1 N N N -31.402 -30.939 -69.036 ? ? ? O2  UGO 18 
UGO C3  C15 C 0  1 N N R -33.777 -30.162 -68.845 ? ? ? C3  UGO 19 
UGO O3  O3  O 0  1 N N N -33.418 -28.217 -70.094 ? ? ? O3  UGO 20 
UGO C9  C16 C 0  1 N N N -39.045 -28.773 -64.717 ? ? ? C9  UGO 21 
UGO N2  N3  N 0  1 N N N -41.345 -27.894 -65.158 ? ? ? N2  UGO 22 
UGO C11 C17 C 0  1 Y N N -42.487 -27.472 -66.083 ? ? ? C11 UGO 23 
UGO C12 C18 C 0  1 Y N N -43.364 -26.488 -65.589 ? ? ? C12 UGO 24 
UGO O4  O4  O 0  1 N N N -43.174 -26.786 -63.086 ? ? ? O4  UGO 25 
UGO O5  O5  O -1 1 N N N -43.018 -24.565 -64.125 ? ? ? O5  UGO 26 
UGO C14 C19 C 0  1 Y N N -44.744 -26.513 -67.666 ? ? ? C14 UGO 27 
UGO N4  N4  N 0  1 Y N N -46.006 -26.206 -69.764 ? ? ? N4  UGO 28 
UGO C16 C20 C 0  1 Y N N -47.054 -25.727 -70.500 ? ? ? C16 UGO 29 
UGO C18 C21 C 0  1 Y N N -47.920 -24.781 -68.433 ? ? ? C18 UGO 30 
UGO N5  N5  N 0  1 Y N N -46.870 -25.278 -67.793 ? ? ? N5  UGO 31 
UGO C19 C22 C 0  1 Y N N -43.839 -27.547 -68.200 ? ? ? C19 UGO 32 
UGO O6  O6  O 0  1 N N N -34.614 -33.909 -70.667 ? ? ? O6  UGO 33 
UGO H2  H2  H 0  1 N N N -32.429 -28.631 -68.350 ? ? ? H2  UGO 34 
UGO H3  H3  H 0  1 N N N -34.167 -28.207 -68.189 ? ? ? H3  UGO 35 
UGO H4  H4  H 0  1 N N N -35.868 -28.626 -69.263 ? ? ? H4  UGO 36 
UGO H5  H5  H 0  1 N N N -37.004 -29.985 -69.559 ? ? ? H5  UGO 37 
UGO H6  H6  H 0  1 N N N -36.269 -30.940 -67.275 ? ? ? H6  UGO 38 
UGO H7  H7  H 0  1 N N N -35.415 -29.385 -66.992 ? ? ? H7  UGO 39 
UGO H8  H8  H 0  1 N N N -37.520 -28.146 -66.942 ? ? ? H8  UGO 40 
UGO H9  H9  H 0  1 N N N -38.445 -29.579 -67.505 ? ? ? H9  UGO 41 
UGO H10 H10 H 0  1 N N N -38.181 -30.711 -65.346 ? ? ? H10 UGO 42 
UGO H11 H11 H 0  1 N N N -36.961 -29.515 -64.791 ? ? ? H11 UGO 43 
UGO H12 H12 H 0  1 N N N -40.859 -29.910 -64.993 ? ? ? H12 UGO 44 
UGO H13 H13 H 0  1 N N N -40.261 -29.086 -66.473 ? ? ? H13 UGO 45 
UGO H14 H14 H 0  1 N N N -45.147 -25.233 -65.996 ? ? ? H14 UGO 46 
UGO H15 H15 H 0  1 N N N -48.872 -24.621 -70.404 ? ? ? H15 UGO 47 
UGO H16 H16 H 0  1 N N N -42.068 -28.753 -67.825 ? ? ? H16 UGO 48 
UGO H17 H17 H 0  1 N N N -36.389 -31.847 -70.281 ? ? ? H17 UGO 49 
UGO H18 H18 H 0  1 N N N -35.555 -32.278 -68.750 ? ? ? H18 UGO 50 
UGO H19 H19 H 0  1 N N N -34.321 -32.000 -71.517 ? ? ? H19 UGO 51 
UGO H20 H20 H 0  1 N N N -31.173 -32.822 -70.560 ? ? ? H20 UGO 52 
UGO H21 H21 H 0  1 N N N -32.988 -32.895 -68.986 ? ? ? H21 UGO 53 
UGO H22 H22 H 0  1 N N N -32.589 -30.434 -70.660 ? ? ? H22 UGO 54 
UGO H23 H23 H 0  1 N N N -31.137 -30.042 -68.871 ? ? ? H23 UGO 55 
UGO H24 H24 H 0  1 N N N -33.792 -30.580 -67.828 ? ? ? H24 UGO 56 
UGO H25 H25 H 0  1 N N N -33.190 -27.295 -70.059 ? ? ? H25 UGO 57 
UGO H26 H26 H 0  1 N N N -38.772 -27.711 -64.804 ? ? ? H26 UGO 58 
UGO H27 H27 H 0  1 N N N -39.130 -29.044 -63.654 ? ? ? H27 UGO 59 
UGO H28 H28 H 0  1 N N N -40.773 -27.079 -65.060 ? ? ? H28 UGO 60 
UGO H29 H29 H 0  1 N N N -47.113 -25.908 -71.563 ? ? ? H29 UGO 61 
UGO H30 H30 H 0  1 N N N -48.675 -24.218 -67.904 ? ? ? H30 UGO 62 
UGO H31 H31 H 0  1 N N N -44.013 -27.960 -69.183 ? ? ? H31 UGO 63 
UGO H32 H32 H 0  1 N N N -35.471 -34.031 -71.058 ? ? ? H32 UGO 64 
UGO H1  H1  H 0  1 N N N -42.928 -24.325 -63.210 ? ? ? H1  UGO 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UGO O1  C1  SING N N 1  
UGO O6  C22 SING N N 2  
UGO C22 C1  SING N N 3  
UGO C22 C21 SING N N 4  
UGO C16 C17 DOUB Y N 5  
UGO C16 N4  SING Y N 6  
UGO O3  C4  SING N N 7  
UGO C1  C2  SING N N 8  
UGO C17 C18 SING Y N 9  
UGO N4  C15 DOUB Y N 10 
UGO C21 N1  SING N N 11 
UGO C2  O2  SING N N 12 
UGO C2  C3  SING N N 13 
UGO N1  C5  SING N N 14 
UGO N1  C3  SING N N 15 
UGO C5  C6  SING N N 16 
UGO C3  C4  SING N N 17 
UGO C15 N5  SING Y N 18 
UGO C15 C14 SING N N 19 
UGO C18 N5  DOUB Y N 20 
UGO C19 C14 DOUB Y N 21 
UGO C19 C20 SING Y N 22 
UGO C14 C13 SING Y N 23 
UGO C6  C7  SING N N 24 
UGO C20 C11 DOUB Y N 25 
UGO C7  C8  SING N N 26 
UGO C13 C12 DOUB Y N 27 
UGO C11 C12 SING Y N 28 
UGO C11 N2  SING N N 29 
UGO C12 N3  SING N N 30 
UGO C10 N2  SING N N 31 
UGO C10 C9  SING N N 32 
UGO C8  C9  SING N N 33 
UGO N3  O5  SING N N 34 
UGO N3  O4  DOUB N N 35 
UGO C4  H2  SING N N 36 
UGO C4  H3  SING N N 37 
UGO C5  H4  SING N N 38 
UGO C5  H5  SING N N 39 
UGO C6  H6  SING N N 40 
UGO C6  H7  SING N N 41 
UGO C7  H8  SING N N 42 
UGO C7  H9  SING N N 43 
UGO C8  H10 SING N N 44 
UGO C8  H11 SING N N 45 
UGO C10 H12 SING N N 46 
UGO C10 H13 SING N N 47 
UGO C13 H14 SING N N 48 
UGO C17 H15 SING N N 49 
UGO C20 H16 SING N N 50 
UGO C21 H17 SING N N 51 
UGO C21 H18 SING N N 52 
UGO C22 H19 SING N N 53 
UGO O1  H20 SING N N 54 
UGO C1  H21 SING N N 55 
UGO C2  H22 SING N N 56 
UGO O2  H23 SING N N 57 
UGO C3  H24 SING N N 58 
UGO O3  H25 SING N N 59 
UGO C9  H26 SING N N 60 
UGO C9  H27 SING N N 61 
UGO N2  H28 SING N N 62 
UGO C16 H29 SING N N 63 
UGO C18 H30 SING N N 64 
UGO C19 H31 SING N N 65 
UGO O6  H32 SING N N 66 
UGO O5  H1  SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UGO SMILES           ACDLabs              12.01 "O=N(=O)c1cc(ccc1NCCCCCCN1CC(O)C(O)C(O)C1CO)c1ncccn1"                                                                                                                                          
UGO InChI            InChI                1.06  "InChI=1S/C22H32N5O6/c28-14-18-20(30)21(31)19(29)13-26(18)11-4-2-1-3-8-23-16-7-6-15(12-17(16)27(32)33)22-24-9-5-10-25-22/h5-7,9-10,12,18-21,23,28-32H,1-4,8,11,13-14H2/t18-,19+,20-,21-/m1/s1" 
UGO InChIKey         InChI                1.06  WPRQGBYRQQLONQ-PLACYPQZSA-N                                                                                                                                                                    
UGO SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([OH-])=O)c3ncccn3"                                                                                                                 
UGO SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([OH-])=O)c3ncccn3"                                                                                                                        
UGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)c2ccc(c(c2)[N+](=O)[OH-])NCCCCCCN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O"                                                                                                              
UGO SMILES           "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1)c2ccc(c(c2)[N+](=O)[OH-])NCCCCCCN3CC(C(C(C3CO)O)O)O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UGO "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{6-[2-nitro-4-(pyrimidin-2-yl)anilino]hexyl}piperidine-3,4,5-triol"                  
UGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[6-[(2-nitro-4-pyrimidin-2-yl-phenyl)amino]hexyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UGO "Create component"   2022-08-18 RCSB 
UGO "Modify coordinates" 2022-08-24 RCSB 
UGO "Modify coordinates" 2022-10-05 RCSB 
UGO "Initial release"    2023-02-22 RCSB 
# 
