data_T1O
# 
_chem_comp.id                                    T1O 
_chem_comp.name                                  "5-[(3aS,4R,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-N-(2-oxopropyl)pentanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H21 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        299.389 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T1O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WDK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T1O O01 O1  O 0 1 N N N N N N 28.785 -16.281 -14.041 -6.295 -2.077 1.059  O01 T1O 1  
T1O C02 C1  C 0 1 N N N N N N 29.812 -16.073 -14.608 -5.608 -1.284 0.445  C02 T1O 2  
T1O N03 N1  N 0 1 N N N N N N 30.867 -17.100 -14.877 -4.346 -1.542 0.076  N03 T1O 3  
T1O C04 C2  C 0 1 N N S N N N 31.872 -16.485 -15.517 -3.809 -0.378 -0.646 C04 T1O 4  
T1O C05 C3  C 0 1 N N R N N N 31.451 -14.868 -15.751 -4.969 0.625  -0.648 C05 T1O 5  
T1O C06 C4  C 0 1 N N N N N N 32.662 -13.940 -15.031 -4.619 1.928  0.098  C06 T1O 6  
T1O S07 S1  S 0 1 N N N N N N 33.760 -14.876 -14.734 -2.784 1.979  -0.015 S07 T1O 7  
T1O N08 N2  N 0 1 N N N N N N 30.311 -14.676 -15.219 -6.046 -0.074 0.070  N08 T1O 8  
T1O C09 C5  C 0 1 N N R N N N 33.023 -16.468 -14.612 -2.572 0.156  0.101  C09 T1O 9  
T1O C10 C6  C 0 1 N N N N N N 34.025 -17.664 -14.974 -1.284 -0.285 -0.598 C10 T1O 10 
T1O C11 C7  C 0 1 N N N N N N 35.504 -17.224 -15.058 -0.077 0.153  0.234  C11 T1O 11 
T1O C12 C8  C 0 1 N N N N N N 36.372 -17.813 -13.897 1.211  -0.288 -0.465 C12 T1O 12 
T1O C13 C9  C 0 1 N N N N N N 37.571 -18.665 -14.401 2.418  0.150  0.366  C13 T1O 13 
T1O C14 C10 C 0 1 N N N N N N 38.816 -17.792 -14.753 3.687  -0.284 -0.322 C14 T1O 14 
T1O N15 N3  N 0 1 N N N N N N 38.638 -16.480 -15.440 4.883  -0.005 0.231  N15 T1O 15 
T1O C16 C11 C 0 1 N N N N N N 39.782 -15.593 -15.812 6.116  -0.428 -0.438 C16 T1O 16 
T1O C17 C12 C 0 1 N N N N N N 40.710 -15.209 -14.622 7.305  0.004  0.381  C17 T1O 17 
T1O C18 C13 C 0 1 N N N N N N 42.220 -14.950 -14.838 8.701  -0.311 -0.092 C18 T1O 18 
T1O O19 O2  O 0 1 N N N N N N 40.283 -15.112 -13.525 7.140  0.604  1.417  O19 T1O 19 
T1O O20 O3  O 0 1 N N N N N N 39.908 -18.189 -14.464 3.630  -0.886 -1.374 O20 T1O 20 
T1O H1  H1  H 0 1 N N N N N N 30.829 -18.067 -14.626 -3.864 -2.364 0.257  H1  T1O 21 
T1O H2  H2  H 0 1 N N N N N N 32.123 -16.932 -16.490 -3.543 -0.657 -1.666 H2  T1O 22 
T1O H3  H3  H 0 1 N N N N N N 31.475 -14.669 -16.833 -5.280 0.842  -1.670 H3  T1O 23 
T1O H4  H4  H 0 1 N N N N N N 33.004 -13.154 -15.721 -5.062 2.790  -0.401 H4  T1O 24 
T1O H5  H5  H 0 1 N N N N N N 32.291 -13.478 -14.104 -4.940 1.875  1.139  H5  T1O 25 
T1O H6  H6  H 0 1 N N N N N N 29.814 -13.809 -15.187 -6.930 0.285  0.248  H6  T1O 26 
T1O H7  H7  H 0 1 N N N N N N 32.694 -16.589 -13.569 -2.579 -0.168 1.141  H7  T1O 27 
T1O H8  H8  H 0 1 N N N N N N 33.730 -18.083 -15.948 -1.280 -1.370 -0.700 H8  T1O 28 
T1O H9  H9  H 0 1 N N N N N N 33.936 -18.440 -14.199 -1.231 0.173  -1.585 H9  T1O 29 
T1O H10 H10 H 0 1 N N N N N N 35.920 -17.566 -16.017 -0.081 1.238  0.336  H10 T1O 30 
T1O H11 H11 H 0 1 N N N N N N 35.549 -16.126 -15.009 -0.130 -0.305 1.221  H11 T1O 31 
T1O H12 H12 H 0 1 N N N N N N 36.764 -16.979 -13.296 1.215  -1.373 -0.567 H12 T1O 32 
T1O H13 H13 H 0 1 N N N N N N 35.731 -18.449 -13.269 1.264  0.170  -1.453 H13 T1O 33 
T1O H14 H14 H 0 1 N N N N N N 37.260 -19.215 -15.301 2.414  1.236  0.468  H14 T1O 34 
T1O H15 H15 H 0 1 N N N N N N 37.852 -19.380 -13.613 2.365  -0.308 1.354  H15 T1O 35 
T1O H16 H16 H 0 1 N N N N N N 37.710 -16.180 -15.662 4.928  0.476  1.072  H16 T1O 36 
T1O H17 H17 H 0 1 N N N N N N 40.389 -16.113 -16.568 6.120  -1.513 -0.540 H17 T1O 37 
T1O H18 H18 H 0 1 N N N N N N 39.374 -14.667 -16.243 6.169  0.031  -1.425 H18 T1O 38 
T1O H19 H19 H 0 1 N N N N N N 42.691 -14.700 -13.876 9.065  0.504  -0.717 H19 T1O 39 
T1O H20 H20 H 0 1 N N N N N N 42.691 -15.853 -15.253 9.358  -0.431 0.769  H20 T1O 40 
T1O H21 H21 H 0 1 N N N N N N 42.352 -14.113 -15.539 8.688  -1.235 -0.670 H21 T1O 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T1O C16 N15 SING N N 1  
T1O C16 C17 SING N N 2  
T1O C05 C04 SING N N 3  
T1O C05 N08 SING N N 4  
T1O C05 C06 SING N N 5  
T1O C04 N03 SING N N 6  
T1O C04 C09 SING N N 7  
T1O N15 C14 SING N N 8  
T1O N08 C02 SING N N 9  
T1O C11 C10 SING N N 10 
T1O C11 C12 SING N N 11 
T1O C06 S07 SING N N 12 
T1O C10 C09 SING N N 13 
T1O N03 C02 SING N N 14 
T1O C18 C17 SING N N 15 
T1O C14 O20 DOUB N N 16 
T1O C14 C13 SING N N 17 
T1O S07 C09 SING N N 18 
T1O C17 O19 DOUB N N 19 
T1O C02 O01 DOUB N N 20 
T1O C13 C12 SING N N 21 
T1O N03 H1  SING N N 22 
T1O C04 H2  SING N N 23 
T1O C05 H3  SING N N 24 
T1O C06 H4  SING N N 25 
T1O C06 H5  SING N N 26 
T1O N08 H6  SING N N 27 
T1O C09 H7  SING N N 28 
T1O C10 H8  SING N N 29 
T1O C10 H9  SING N N 30 
T1O C11 H10 SING N N 31 
T1O C11 H11 SING N N 32 
T1O C12 H12 SING N N 33 
T1O C12 H13 SING N N 34 
T1O C13 H14 SING N N 35 
T1O C13 H15 SING N N 36 
T1O N15 H16 SING N N 37 
T1O C16 H17 SING N N 38 
T1O C16 H18 SING N N 39 
T1O C18 H19 SING N N 40 
T1O C18 H20 SING N N 41 
T1O C18 H21 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T1O SMILES           ACDLabs              12.01 "O=C2NC1C(SCC1N2)CCCCC(=O)NCC(=O)C"                                                                                                           
T1O InChI            InChI                1.03  "InChI=1S/C13H21N3O3S/c1-8(17)6-14-11(18)5-3-2-4-10-12-9(7-20-10)15-13(19)16-12/h9-10,12H,2-7H2,1H3,(H,14,18)(H2,15,16,19)/t9-,10+,12-/m0/s1" 
T1O InChIKey         InChI                1.03  NVGARBFYWDPYAF-UMNHJUIQSA-N                                                                                                                   
T1O SMILES_CANONICAL CACTVS               3.385 "CC(=O)CNC(=O)CCCC[C@H]1SC[C@@H]2NC(=O)N[C@H]12"                                                                                              
T1O SMILES           CACTVS               3.385 "CC(=O)CNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12"                                                                                                  
T1O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)CNC(=O)CCCC[C@@H]1[C@@H]2[C@H](CS1)NC(=O)N2"                                                                                           
T1O SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)CNC(=O)CCCCC1C2C(CS1)NC(=O)N2"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T1O "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(3aS,4R,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-N-(2-oxopropyl)pentanamide"                                                        
T1O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-[(3~{a}~{S},4~{R},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(2-oxidanylidenepropyl)pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T1O "Create component" 2017-07-08 RCSB 
T1O "Initial release"  2018-07-11 RCSB 
T1O "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            T1O 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
