data_SXO
# 
_chem_comp.id                                    SXO 
_chem_comp.name                                  "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H37 N2 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-04-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        484.544 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SXO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KGC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SXO O25  O25  O 0 1 N N N N N N 7.526  -11.031 3.125  8.824   2.154  -1.266 O25  SXO 1  
SXO P24  P24  P 0 1 N N N N N N 7.752  -12.570 2.951  7.486   2.591  -0.485 P24  SXO 2  
SXO O26  O26  O 0 1 N N N N N N 8.905  -12.998 3.893  7.741   3.985  0.278  O26  SXO 3  
SXO O23  O23  O 0 1 N N N N N N 7.862  -12.878 1.438  6.380   2.754  -1.455 O23  SXO 4  
SXO O27  O27  O 0 1 N N N N N N 6.423  -13.217 3.470  7.095   1.455  0.587  O27  SXO 5  
SXO C28  C28  C 0 1 N N N N N N 6.012  -12.956 4.850  6.708   0.132  0.213  C28  SXO 6  
SXO C29  C29  C 0 1 N N N N N N 4.637  -13.569 5.134  6.406   -0.686 1.471  C29  SXO 7  
SXO C30  C30  C 0 1 N N N N N N 4.179  -13.011 6.469  7.657   -0.750 2.350  C30  SXO 8  
SXO C31  C31  C 0 1 N N N N N N 3.653  -13.157 4.040  5.269   -0.022 2.251  C31  SXO 9  
SXO C32  C32  C 0 1 N N S N N N 4.734  -15.131 5.190  5.991   -2.103 1.071  C32  SXO 10 
SXO O33  O33  O 0 1 N N N N N N 5.370  -15.634 4.012  7.096   -2.766 0.453  O33  SXO 11 
SXO C34  C34  C 0 1 N N N N N N 3.343  -15.764 5.281  4.840   -2.034 0.100  C34  SXO 12 
SXO O35  O35  O 0 1 N N N N N N 2.835  -16.291 4.287  5.023   -2.271 -1.075 O35  SXO 13 
SXO N36  N36  N 0 1 N N N N N N 2.738  -15.729 6.459  3.608   -1.709 0.538  N36  SXO 14 
SXO C37  C37  C 0 1 N N N N N N 1.416  -16.296 6.695  2.470   -1.747 -0.383 C37  SXO 15 
SXO C38  C38  C 0 1 N N N N N N 0.756  -15.707 7.931  1.197   -1.337 0.361  C38  SXO 16 
SXO C39  C39  C 0 1 N N N N N N -0.657 -15.222 7.668  0.026   -1.377 -0.586 C39  SXO 17 
SXO O40  O40  O 0 1 N N N N N N -1.579 -15.456 8.452  0.193   -1.701 -1.743 O40  SXO 18 
SXO N41  N41  N 0 1 N N N N N N -0.794 -14.535 6.544  -1.206  -1.052 -0.148 N41  SXO 19 
SXO C42  C42  C 0 1 N N N N N N -2.048 -13.965 6.073  -2.345  -1.090 -1.070 C42  SXO 20 
SXO C43  C43  C 0 1 N N N N N N -1.804 -12.662 5.334  -3.617  -0.680 -0.325 C43  SXO 21 
SXO S1   S1   S 0 1 N N N N N N -0.670 -12.916 4.051  -5.024  -0.728 -1.463 S1   SXO 22 
SXO C1   C1   C 0 1 N N N N N N -0.334 -11.248 3.684  -6.279  -0.241 -0.406 C1   SXO 23 
SXO O1   O1   O 0 1 N N N N N N -0.907 -10.293 4.211  -6.030  0.013  0.755  O1   SXO 24 
SXO C2   C2   C 0 1 N N N N N N 0.779  -11.049 2.666  -7.692  -0.126 -0.915 C2   SXO 25 
SXO C3   C3   C 0 1 N N N N N N 0.385  -10.182 1.474  -8.610  0.323  0.223  C3   SXO 26 
SXO C4   C4   C 0 1 N N N N N N 0.205  -8.724  1.863  -10.045 0.439  -0.295 C4   SXO 27 
SXO C5   C5   C 0 1 N N N N N N 0.078  -7.835  0.635  -10.964 0.888  0.844  C5   SXO 28 
SXO C6   C6   C 0 1 N N N N N N -0.056 -6.371  1.023  -12.399 1.004  0.326  C6   SXO 29 
SXO C7   C7   C 0 1 N N N N N N -1.414 -6.068  1.639  -13.317 1.454  1.464  C7   SXO 30 
SXO C8   C8   C 0 1 N N N N N N -2.505 -6.148  0.595  -14.752 1.570  0.947  C8   SXO 31 
SXO H28  H28  H 0 1 N N N N N N 5.951  -11.868 5.001  5.817   0.177  -0.412 H28  SXO 32 
SXO H28A H28A H 0 0 N N N N N N 6.750  -13.400 5.534  7.518   -0.341 -0.342 H28A SXO 33 
SXO H30  H30  H 0 1 N N N N N N 4.068  -13.833 7.192  7.472   -1.409 3.198  H30  SXO 34 
SXO H30A H30A H 0 0 N N N N N N 3.212  -12.503 6.341  8.493   -1.135 1.765  H30A SXO 35 
SXO H30B H30B H 0 0 N N N N N N 4.925  -12.293 6.841  7.898   0.249  2.712  H30B SXO 36 
SXO H31  H31  H 0 1 N N N N N N 2.646  -13.058 4.471  4.969   -0.668 3.076  H31  SXO 37 
SXO H31A H31A H 0 0 N N N N N N 3.965  -12.193 3.611  5.609   0.936  2.644  H31A SXO 38 
SXO H31B H31B H 0 0 N N N N N N 3.641  -13.923 3.251  4.419   0.138  1.587  H31B SXO 39 
SXO H32  H32  H 0 1 N N N N N N 5.321  -15.390 6.083  5.685   -2.656 1.959  H32  SXO 40 
SXO HO33 HO33 H 0 0 N N N N N N 4.723  -15.746 3.325  7.422   -2.328 -0.345 HO33 SXO 41 
SXO HN36 HN36 H 0 0 N N N N N N 3.211  -15.292 7.224  3.475   -1.450 1.463  HN36 SXO 42 
SXO H37  H37  H 0 1 N N N N N N 0.781  -16.083 5.822  2.646   -1.057 -1.208 H37  SXO 43 
SXO H37A H37A H 0 0 N N N N N N 1.532  -17.378 6.854  2.352   -2.758 -0.774 H37A SXO 44 
SXO H38  H38  H 0 1 N N N N N N 1.353  -14.838 8.246  1.020   -2.028 1.186  H38  SXO 45 
SXO H38A H38A H 0 0 N N N N N N 0.717  -16.485 8.707  1.315   -0.327 0.752  H38A SXO 46 
SXO HN41 HN41 H 0 0 N N N N N N 0.020  -14.398 5.980  -1.340  -0.793 0.777  HN41 SXO 47 
SXO H42  H42  H 0 1 N N N N N N -2.533 -14.679 5.391  -2.168  -0.400 -1.895 H42  SXO 48 
SXO H42A H42A H 0 0 N N N N N N -2.692 -13.763 6.941  -2.462  -2.101 -1.460 H42A SXO 49 
SXO H43  H43  H 0 1 N N N N N N -1.397 -11.918 6.035  -3.794  -1.370 0.500  H43  SXO 50 
SXO H43A H43A H 0 0 N N N N N N -2.753 -12.298 4.914  -3.500  0.331  0.065  H43A SXO 51 
SXO H2   H2   H 0 1 N N N N N N 1.622  -10.561 3.176  -7.729  0.605  -1.723 H2   SXO 52 
SXO H2A  H2A  H 0 1 N N N N N N 1.031  -12.043 2.269  -8.023  -1.096 -1.288 H2A  SXO 53 
SXO H3   H3   H 0 1 N N N N N N -0.576 -10.552 1.087  -8.573  -0.409 1.030  H3   SXO 54 
SXO H3A  H3A  H 0 1 N N N N N N 1.178  -10.247 0.715  -8.279  1.292  0.596  H3A  SXO 55 
SXO H4   H4   H 0 1 N N N N N N -0.709 -8.628  2.468  -10.083 1.171  -1.102 H4   SXO 56 
SXO H4A  H4A  H 0 1 N N N N N N 1.089  -8.405  2.434  -10.377 -0.530 -0.668 H4A  SXO 57 
SXO H5   H5   H 0 1 N N N N N N -0.825 -8.132  0.082  -10.926 0.157  1.651  H5   SXO 58 
SXO H5A  H5A  H 0 1 N N N N N N 0.977  -7.957  0.013  -10.632 1.857  1.216  H5A  SXO 59 
SXO H6   H6   H 0 1 N N N N N N 0.726  -6.129  1.758  -12.436 1.736  -0.481 H6   SXO 60 
SXO H6A  H6A  H 0 1 N N N N N N 0.048  -5.765  0.111  -12.730 0.035  -0.047 H6A  SXO 61 
SXO H7   H7   H 0 1 N N N N N N -1.621 -6.802  2.432  -13.280 0.722  2.272  H7   SXO 62 
SXO H7A  H7A  H 0 1 N N N N N N -1.395 -5.049  2.054  -12.986 2.423  1.837  H7A  SXO 63 
SXO H8   H8   H 0 1 N N N N N N -2.445 -5.270  -0.066 -14.789 2.301  0.140  H8   SXO 64 
SXO H8A  H8A  H 0 1 N N N N N N -3.487 -6.167  1.091  -15.083 0.600  0.574  H8A  SXO 65 
SXO H8B  H8B  H 0 1 N N N N N N -2.377 -7.064  0.000  -15.406 1.890  1.758  H8B  SXO 66 
SXO HO25 HO25 H 0 0 N N N N N N 7.480  -10.820 4.050  9.592   2.028  -0.691 HO25 SXO 67 
SXO HO26 HO26 H 0 0 N N N N N N 9.708  -13.086 3.392  7.981   4.716  -0.308 HO26 SXO 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SXO P24  O25  SING N N 1  
SXO O25  HO25 SING N N 2  
SXO O23  P24  DOUB N N 3  
SXO P24  O27  SING N N 4  
SXO P24  O26  SING N N 5  
SXO O26  HO26 SING N N 6  
SXO O27  C28  SING N N 7  
SXO C28  H28A SING N N 8  
SXO C28  C29  SING N N 9  
SXO C28  H28  SING N N 10 
SXO C31  C29  SING N N 11 
SXO C29  C32  SING N N 12 
SXO C29  C30  SING N N 13 
SXO H30  C30  SING N N 14 
SXO C30  H30B SING N N 15 
SXO C30  H30A SING N N 16 
SXO H31  C31  SING N N 17 
SXO H31A C31  SING N N 18 
SXO C31  H31B SING N N 19 
SXO O33  C32  SING N N 20 
SXO C32  C34  SING N N 21 
SXO C32  H32  SING N N 22 
SXO HO33 O33  SING N N 23 
SXO O35  C34  DOUB N N 24 
SXO C34  N36  SING N N 25 
SXO N36  C37  SING N N 26 
SXO N36  HN36 SING N N 27 
SXO H37  C37  SING N N 28 
SXO C37  H37A SING N N 29 
SXO C37  C38  SING N N 30 
SXO C39  C38  SING N N 31 
SXO C38  H38A SING N N 32 
SXO C38  H38  SING N N 33 
SXO N41  C39  SING N N 34 
SXO C39  O40  DOUB N N 35 
SXO HN41 N41  SING N N 36 
SXO C42  N41  SING N N 37 
SXO C43  C42  SING N N 38 
SXO H42  C42  SING N N 39 
SXO C42  H42A SING N N 40 
SXO S1   C43  SING N N 41 
SXO H43A C43  SING N N 42 
SXO C43  H43  SING N N 43 
SXO C1   S1   SING N N 44 
SXO C2   C1   SING N N 45 
SXO C1   O1   DOUB N N 46 
SXO C3   C2   SING N N 47 
SXO H2   C2   SING N N 48 
SXO C2   H2A  SING N N 49 
SXO H3A  C3   SING N N 50 
SXO H3   C3   SING N N 51 
SXO C3   C4   SING N N 52 
SXO C5   C4   SING N N 53 
SXO C4   H4   SING N N 54 
SXO C4   H4A  SING N N 55 
SXO H5A  C5   SING N N 56 
SXO H5   C5   SING N N 57 
SXO C5   C6   SING N N 58 
SXO H6   C6   SING N N 59 
SXO C6   C7   SING N N 60 
SXO C6   H6A  SING N N 61 
SXO C8   C7   SING N N 62 
SXO C7   H7   SING N N 63 
SXO C7   H7A  SING N N 64 
SXO H8A  C8   SING N N 65 
SXO H8   C8   SING N N 66 
SXO C8   H8B  SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SXO SMILES           ACDLabs              10.04 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)CCCCCCC"                                                                                                                        
SXO SMILES_CANONICAL CACTVS               3.341 "CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                 
SXO SMILES           CACTVS               3.341 "CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                   
SXO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O)O)O"                                                                                                                    
SXO SMILES           "OpenEye OEToolkits" 1.5.0 "CCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"                                                                                                                        
SXO InChI            InChI                1.03  "InChI=1S/C19H37N2O8PS/c1-4-5-6-7-8-9-16(23)31-13-12-20-15(22)10-11-21-18(25)17(24)19(2,3)14-29-30(26,27)28/h17,24H,4-14H2,1-3H3,(H,20,22)(H,21,25)(H2,26,27,28)/t17-/m1/s1" 
SXO InChIKey         InChI                1.03  JIQRMRIKUIPMRV-QGZVFWFLSA-N                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SXO "SYSTEMATIC NAME" ACDLabs              10.04 "S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate"  
SXO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "S-[2-[3-[[(2S)-2-hydroxy-3,3-dimethyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] octanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SXO "Create component"  2009-04-01 RCSB 
SXO "Modify descriptor" 2011-06-04 RCSB 
SXO "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SXO 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
