data_S6O
# 
_chem_comp.id                                    S6O 
_chem_comp.name                                  "~{N}-[2-[(2-carbamimidoyl-1-benzothiophen-4-yl)-methyl-amino]ethyl]-2-(4-chloranylphenoxy)-~{N},2-dimethyl-propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 Cl N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-14 
_chem_comp.pdbx_modified_date                    2023-08-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.004 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S6O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BYG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S6O C2  C1  C  0 1 Y N N 19.295 17.956 -5.700 3.467  -0.066 -0.894 C2  S6O 1  
S6O C7  C2  C  0 1 N N N 14.780 19.763 -0.980 -2.648 1.597  -0.716 C7  S6O 2  
S6O C6  C3  C  0 1 N N N 15.692 21.062 -2.889 -0.518 2.738  -1.024 C6  S6O 3  
S6O C4  C4  C  0 1 Y N N 18.299 20.286 -5.012 2.614  1.761  0.664  C4  S6O 4  
S6O C10 C5  C  0 1 N N N 12.814 21.163 -0.325 -4.234 1.664  1.189  C10 S6O 5  
S6O C9  C6  C  0 1 N N N 13.834 19.533 1.289  -4.794 2.816  -0.956 C9  S6O 6  
S6O C15 C7  C  0 1 Y N N 18.210 20.032 1.656  -2.623 -1.991 0.940  C15 S6O 7  
S6O C13 C8  C  0 1 Y N N 17.883 22.119 2.805  -4.405 -3.160 -0.158 C13 S6O 8  
S6O O   O1  O  0 1 N N N 14.979 21.567 0.658  -4.726 0.405  -0.814 O   S6O 9  
S6O C   C9  C  0 1 N N N 20.513 16.096 -6.836 4.514  -1.981 -2.088 C   S6O 10 
S6O N   N1  N  0 1 N N N 21.138 15.640 -7.851 5.385  -3.048 -2.002 N   S6O 11 
S6O C3  C10 C  0 1 Y N N 19.142 19.384 -5.717 3.391  0.620  0.329  C3  S6O 12 
S6O C1  C11 C  0 1 Y N N 20.247 17.495 -6.527 4.287  -1.119 -0.915 C1  S6O 13 
S6O C5  C12 C  0 1 N N N 17.078 20.447 -2.815 0.384  2.326  0.141  C5  S6O 14 
S6O C11 C13 C  0 1 Y N N 16.190 21.274 1.346  -4.249 -0.774 -0.333 C11 S6O 15 
S6O C8  C14 C  0 1 N N N 14.104 20.519 0.166  -4.106 1.599  -0.334 C8  S6O 16 
S6O C12 C15 C  0 1 Y N N 16.635 22.241 2.233  -4.891 -1.963 -0.647 C12 S6O 17 
S6O C14 C16 C  0 1 Y N N 18.672 21.027 2.489  -3.271 -3.174 0.635  C14 S6O 18 
S6O S   S1  S  0 1 Y N N 21.072 18.792 -7.374 5.058  -1.335 0.646  S   S6O 19 
S6O C16 C17 C  0 1 Y N N 16.964 20.157 1.082  -3.110 -0.791 0.457  C16 S6O 20 
S6O C17 C18 C  0 1 N N N 13.549 19.844 -3.085 -2.520 3.928  -0.017 C17 S6O 21 
S6O C18 C19 C  0 1 N N N 16.563 18.680 -4.495 2.224  3.709  -0.609 C18 S6O 22 
S6O C19 C20 C  0 1 Y N N 18.340 21.659 -5.212 2.676  2.295  1.932  C19 S6O 23 
S6O C20 C21 C  0 1 Y N N 19.239 22.184 -6.120 3.497  1.725  2.895  C20 S6O 24 
S6O C21 C22 C  0 1 Y N N 20.093 21.356 -6.829 4.259  0.622  2.591  C21 S6O 25 
S6O C22 C23 C  0 1 Y N N 20.046 19.987 -6.614 4.213  0.058  1.312  C22 S6O 26 
S6O N1  N2  N  0 1 N N N 20.002 15.234 -5.950 3.890  -1.736 -3.208 N1  S6O 27 
S6O N2  N3  N  0 1 N N N 17.447 19.714 -4.037 1.786  2.343  -0.295 N2  S6O 28 
S6O N3  N4  N  0 1 N N N 14.683 20.214 -2.252 -1.917 2.721  -0.590 N3  S6O 29 
S6O O1  O2  O  0 1 N N N 15.394 18.735 -0.749 -2.134 0.583  -1.138 O1  S6O 30 
S6O CL  CL1 CL 0 0 N N N 20.305 20.947 3.079  -2.661 -4.680 1.247  CL  S6O 31 
S6O H3  H1  H  0 1 N N N 18.696 17.309 -5.076 2.896  0.236  -1.760 H3  S6O 32 
S6O H6  H2  H  0 1 N N N 15.708 22.038 -2.381 -0.251 3.743  -1.352 H6  S6O 33 
S6O H7  H3  H  0 1 N N N 15.422 21.203 -3.946 -0.386 2.039  -1.850 H7  S6O 34 
S6O H12 H4  H  0 1 N N N 12.335 21.704 0.504  -3.838 2.615  1.547  H12 S6O 35 
S6O H13 H5  H  0 1 N N N 13.042 21.867 -1.139 -5.284 1.579  1.470  H13 S6O 36 
S6O H11 H6  H  0 1 N N N 12.133 20.383 -0.696 -3.671 0.845  1.636  H11 S6O 37 
S6O H9  H7  H  0 1 N N N 13.347 20.054 2.126  -4.524 2.888  -2.009 H9  S6O 38 
S6O H10 H8  H  0 1 N N N 13.175 18.732 0.923  -5.875 2.708  -0.865 H10 S6O 39 
S6O H8  H9  H  0 1 N N N 14.785 19.098 1.631  -4.474 3.719  -0.436 H8  S6O 40 
S6O H16 H10 H  0 1 N N N 18.818 19.163 1.455  -1.738 -2.004 1.559  H16 S6O 41 
S6O H15 H11 H  0 1 N N N 18.242 22.869 3.494  -4.910 -4.085 -0.395 H15 S6O 42 
S6O H   H12 H  0 1 N N N 21.239 14.653 -7.974 5.849  -3.230 -1.170 H   S6O 43 
S6O H27 H13 H  0 1 N N N 21.527 16.270 -8.523 5.535  -3.615 -2.774 H27 S6O 44 
S6O H5  H14 H  0 1 N N N 17.107 19.749 -1.965 0.252  3.025  0.967  H5  S6O 45 
S6O H4  H15 H  0 1 N N N 17.811 21.252 -2.654 0.117  1.321  0.469  H4  S6O 46 
S6O H14 H16 H  0 1 N N N 16.007 23.086 2.475  -5.771 -1.953 -1.274 H14 S6O 47 
S6O H17 H17 H  0 1 N N N 16.591 19.384 0.426  -2.603 0.132  0.696  H17 S6O 48 
S6O H19 H18 H  0 1 N N N 12.860 19.211 -2.507 -2.998 4.505  -0.808 H19 S6O 49 
S6O H18 H19 H  0 1 N N N 13.024 20.753 -3.414 -3.265 3.643  0.726  H18 S6O 50 
S6O H20 H20 H  0 1 N N N 13.906 19.289 -3.965 -1.746 4.531  0.457  H20 S6O 51 
S6O H22 H21 H  0 1 N N N 15.956 18.316 -3.653 3.243  3.685  -0.995 H22 S6O 52 
S6O H21 H22 H  0 1 N N N 15.902 19.083 -5.277 1.561  4.140  -1.359 H21 S6O 53 
S6O H23 H23 H  0 1 N N N 17.154 17.848 -4.907 2.193  4.317  0.296  H23 S6O 54 
S6O H24 H24 H  0 1 N N N 17.676 22.310 -4.663 2.082  3.162  2.179  H24 S6O 55 
S6O H25 H25 H  0 1 N N N 19.276 23.252 -6.279 3.538  2.151  3.887  H25 S6O 56 
S6O H26 H26 H  0 1 N N N 20.789 21.772 -7.542 4.896  0.185  3.347  H26 S6O 57 
S6O H1  H27 H  0 1 N N N 19.515 15.700 -5.212 3.277  -0.987 -3.269 H1  S6O 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S6O N   C   SING N N 1  
S6O S   C22 SING Y N 2  
S6O S   C1  SING Y N 3  
S6O C   C1  SING N N 4  
S6O C   N1  DOUB N N 5  
S6O C21 C22 DOUB Y N 6  
S6O C21 C20 SING Y N 7  
S6O C22 C3  SING Y N 8  
S6O C1  C2  DOUB Y N 9  
S6O C20 C19 DOUB Y N 10 
S6O C3  C2  SING Y N 11 
S6O C3  C4  DOUB Y N 12 
S6O C19 C4  SING Y N 13 
S6O C4  N2  SING N N 14 
S6O C18 N2  SING N N 15 
S6O N2  C5  SING N N 16 
S6O C17 N3  SING N N 17 
S6O C6  C5  SING N N 18 
S6O C6  N3  SING N N 19 
S6O N3  C7  SING N N 20 
S6O C7  O1  DOUB N N 21 
S6O C7  C8  SING N N 22 
S6O C10 C8  SING N N 23 
S6O C8  O   SING N N 24 
S6O C8  C9  SING N N 25 
S6O O   C11 SING N N 26 
S6O C16 C11 DOUB Y N 27 
S6O C16 C15 SING Y N 28 
S6O C11 C12 SING Y N 29 
S6O C15 C14 DOUB Y N 30 
S6O C12 C13 DOUB Y N 31 
S6O C14 C13 SING Y N 32 
S6O C14 CL  SING N N 33 
S6O C2  H3  SING N N 34 
S6O C6  H6  SING N N 35 
S6O C6  H7  SING N N 36 
S6O C10 H12 SING N N 37 
S6O C10 H13 SING N N 38 
S6O C10 H11 SING N N 39 
S6O C9  H9  SING N N 40 
S6O C9  H10 SING N N 41 
S6O C9  H8  SING N N 42 
S6O C15 H16 SING N N 43 
S6O C13 H15 SING N N 44 
S6O N   H   SING N N 45 
S6O N   H27 SING N N 46 
S6O C5  H5  SING N N 47 
S6O C5  H4  SING N N 48 
S6O C12 H14 SING N N 49 
S6O C16 H17 SING N N 50 
S6O C17 H19 SING N N 51 
S6O C17 H18 SING N N 52 
S6O C17 H20 SING N N 53 
S6O C18 H22 SING N N 54 
S6O C18 H21 SING N N 55 
S6O C18 H23 SING N N 56 
S6O C19 H24 SING N N 57 
S6O C20 H25 SING N N 58 
S6O C21 H26 SING N N 59 
S6O N1  H1  SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S6O InChI            InChI                1.06    "InChI=1S/C23H27ClN4O2S/c1-23(2,30-16-10-8-15(24)9-11-16)22(29)28(4)13-12-27(3)18-6-5-7-19-17(18)14-20(31-19)21(25)26/h5-11,14H,12-13H2,1-4H3,(H3,25,26)" 
S6O InChIKey         InChI                1.06    WWBHPHFJJFVXBN-UHFFFAOYSA-N                                                                                                                               
S6O SMILES_CANONICAL CACTVS               3.385   "CN(CCN(C)c1cccc2sc(cc12)C(N)=N)C(=O)C(C)(C)Oc3ccc(Cl)cc3"                                                                                                
S6O SMILES           CACTVS               3.385   "CN(CCN(C)c1cccc2sc(cc12)C(N)=N)C(=O)C(C)(C)Oc3ccc(Cl)cc3"                                                                                                
S6O SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C(/c1cc2c(cccc2s1)N(C)CCN(C)C(=O)C(C)(C)Oc3ccc(cc3)Cl)\N"                                                                                          
S6O SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C(=O)N(C)CCN(C)c1cccc2c1cc(s2)C(=N)N)Oc3ccc(cc3)Cl"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           S6O 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-[(2-carbamimidoyl-1-benzothiophen-4-yl)-methyl-amino]ethyl]-2-(4-chloranylphenoxy)-~{N},2-dimethyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S6O "Create component" 2022-12-14 PDBE 
S6O "Initial release"  2023-08-30 RCSB 
# 
