data_P8O
# 
_chem_comp.id                                    P8O 
_chem_comp.name                                  "(1~{S})-1'-[5-[2-(trifluoromethyl)pyridin-3-yl]sulfanyl-3~{H}-imidazo[4,5-b]pyrazin-2-yl]spiro[1,3-dihydroindene-2,4'-piperidine]-1-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H22 F3 N7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-03 
_chem_comp.pdbx_modified_date                    2023-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        497.539 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     P8O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8B5Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P8O C2  C1  C 0 1 N N N 23.713 8.896  5.844  -5.536 0.033  -1.307 C2  P8O 1  
P8O C5  C2  C 0 1 Y N N 23.659 8.368  4.424  -5.435 -1.126 -0.350 C5  P8O 2  
P8O C7  C3  C 0 1 Y N N 22.341 8.248  2.496  -5.472 -3.404 -0.002 C7  P8O 3  
P8O C8  C4  C 0 1 Y N N 23.309 7.501  1.840  -5.256 -3.246 1.354  C8  P8O 4  
P8O C12 C5  C 0 1 Y N N 27.432 6.815  3.524  -3.394 1.184  1.148  C12 P8O 5  
P8O N13 N1  N 0 1 Y N N 27.770 7.760  2.627  -2.593 0.259  0.633  N13 P8O 6  
P8O C16 C6  C 0 1 Y N N 30.253 7.478  0.158  0.740  0.745  -0.401 C16 P8O 7  
P8O C19 C7  C 0 1 Y N N 29.372 6.220  1.766  -0.893 1.897  0.470  C19 P8O 8  
P8O C21 C8  C 0 1 Y N N 28.052 5.558  3.537  -2.937 2.488  1.327  C21 P8O 9  
P8O N22 N2  N 0 1 N N N 30.992 7.895  -0.939 1.977  0.422  -0.918 N22 P8O 10 
P8O C23 C9  C 0 1 N N N 31.201 9.343  -1.162 2.865  1.591  -0.925 C23 P8O 11 
P8O C24 C10 C 0 1 N N N 32.442 9.807  -0.393 4.167  1.237  -1.650 C24 P8O 12 
P8O C27 C11 C 0 1 Y N N 35.666 9.512  -2.210 7.070  -0.773 -0.575 C27 P8O 13 
P8O C30 C12 C 0 1 Y N N 38.405 9.725  -1.687 8.488  -1.321 1.739  C30 P8O 14 
P8O C31 C13 C 0 1 Y N N 37.495 9.622  -0.633 7.315  -0.594 1.801  C31 P8O 15 
P8O C32 C14 C 0 1 Y N N 36.121 9.515  -0.891 6.604  -0.319 0.645  C32 P8O 16 
P8O C33 C15 C 0 1 N N S 34.956 9.395  0.080  5.310  0.444  0.447  C33 P8O 17 
P8O C36 C16 C 0 1 N N N 33.433 7.522  -0.657 3.869  -1.133 -0.883 C36 P8O 18 
P8O C37 C17 C 0 1 N N N 32.150 7.090  -1.399 2.576  -0.700 -0.184 C37 P8O 19 
P8O F1  F1  F 0 1 N N N 24.189 7.897  6.677  -4.308 0.700  -1.364 F1  P8O 20 
P8O F3  F2  F 0 1 N N N 24.544 10.005 5.919  -5.869 -0.441 -2.581 F3  P8O 21 
P8O F4  F3  F 0 1 N N N 22.454 9.283  6.286  -6.527 0.917  -0.866 F4  P8O 22 
P8O N6  N3  N 0 1 Y N N 22.547 8.648  3.738  -5.554 -2.358 -0.803 N6  P8O 23 
P8O C9  C18 C 0 1 Y N N 24.494 7.160  2.501  -5.119 -1.969 1.873  C9  P8O 24 
P8O C10 C19 C 0 1 Y N N 24.695 7.594  3.832  -5.211 -0.886 1.000  C10 P8O 25 
P8O S11 S1  S 0 1 N N N 26.185 7.184  4.691  -5.044 0.762  1.600  S11 P8O 26 
P8O C14 C20 C 0 1 Y N N 28.740 7.485  1.740  -1.356 0.580  0.289  C14 P8O 27 
P8O N15 N4  N 0 1 Y N N 29.306 8.188  0.737  -0.304 -0.125 -0.262 N15 P8O 28 
P8O N17 N5  N 0 1 Y N N 30.300 6.247  0.759  0.391  1.932  0.030  N17 P8O 29 
P8O N20 N6  N 0 1 Y N N 29.020 5.293  2.665  -1.704 2.815  0.992  N20 P8O 30 
P8O C25 C21 C 0 1 N N N 33.712 9.037  -0.794 4.825  0.050  -0.957 C25 P8O 31 
P8O C26 C22 C 0 1 N N N 34.158 9.393  -2.245 6.123  -0.345 -1.677 C26 P8O 32 
P8O C28 C23 C 0 1 Y N N 36.583 9.615  -3.270 8.246  -1.502 -0.634 C28 P8O 33 
P8O C29 C24 C 0 1 Y N N 37.946 9.731  -3.005 8.954  -1.776 0.520  C29 P8O 34 
P8O N35 N7  N 0 1 N N N 34.936 10.666 0.842  5.556  1.891  0.514  N35 P8O 35 
P8O H1  H1  H 0 1 N N N 21.420 8.502  1.992  -5.575 -4.397 -0.413 H1  P8O 36 
P8O H2  H2  H 0 1 N N N 23.148 7.183  0.820  -5.190 -4.108 2.000  H2  P8O 37 
P8O H3  H3  H 0 1 N N N 27.745 4.809  4.252  -3.596 3.236  1.742  H3  P8O 38 
P8O H4  H4  H 0 1 N N N 31.344 9.531  -2.236 2.375  2.417  -1.440 H4  P8O 39 
P8O H5  H5  H 0 1 N N N 30.321 9.899  -0.807 3.089  1.884  0.101  H5  P8O 40 
P8O H6  H6  H 0 1 N N N 32.601 10.877 -0.594 3.947  0.978  -2.686 H6  P8O 41 
P8O H7  H7  H 0 1 N N N 32.265 9.658  0.683  4.842  2.093  -1.625 H7  P8O 42 
P8O H8  H8  H 0 1 N N N 39.463 9.800  -1.483 9.040  -1.533 2.642  H8  P8O 43 
P8O H9  H9  H 0 1 N N N 37.851 9.625  0.386  6.951  -0.239 2.754  H9  P8O 44 
P8O H10 H10 H 0 1 N N N 35.150 8.559  0.768  4.578  0.150  1.199  H10 P8O 45 
P8O H11 H11 H 0 1 N N N 33.323 7.278  0.410  4.334  -1.941 -0.319 H11 P8O 46 
P8O H12 H12 H 0 1 N N N 34.286 6.967  -1.074 3.639  -1.479 -1.891 H12 P8O 47 
P8O H13 H13 H 0 1 N N N 31.955 6.026  -1.197 2.802  -0.389 0.836  H13 P8O 48 
P8O H14 H14 H 0 1 N N N 32.289 7.239  -2.480 1.877  -1.536 -0.163 H14 P8O 49 
P8O H15 H15 H 0 1 N N N 25.248 6.571  2.000  -4.950 -1.816 2.929  H15 P8O 50 
P8O H16 H16 H 0 1 N N N 29.044 9.116  0.471  -0.306 -1.064 -0.506 H16 P8O 51 
P8O H18 H18 H 0 1 N N N 33.708 10.347 -2.558 6.532  0.509  -2.217 H18 P8O 52 
P8O H19 H19 H 0 1 N N N 33.855 8.598  -2.942 5.940  -1.174 -2.361 H19 P8O 53 
P8O H20 H20 H 0 1 N N N 36.231 9.604  -4.291 8.611  -1.857 -1.587 H20 P8O 54 
P8O H21 H21 H 0 1 N N N 38.648 9.826  -3.820 9.871  -2.344 0.470  H21 P8O 55 
P8O H22 H22 H 0 1 N N N 34.185 10.648 1.502  5.920  2.154  1.418  H22 P8O 56 
P8O H23 H23 H 0 1 N N N 35.803 10.778 1.327  6.174  2.188  -0.225 H23 P8O 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P8O C28 C29 DOUB Y N 1  
P8O C28 C27 SING Y N 2  
P8O C29 C30 SING Y N 3  
P8O C26 C27 SING N N 4  
P8O C26 C25 SING N N 5  
P8O C27 C32 DOUB Y N 6  
P8O C30 C31 DOUB Y N 7  
P8O C37 N22 SING N N 8  
P8O C37 C36 SING N N 9  
P8O C23 N22 SING N N 10 
P8O C23 C24 SING N N 11 
P8O N22 C16 SING N N 12 
P8O C32 C31 SING Y N 13 
P8O C32 C33 SING N N 14 
P8O C25 C36 SING N N 15 
P8O C25 C24 SING N N 16 
P8O C25 C33 SING N N 17 
P8O C33 N35 SING N N 18 
P8O C16 N15 SING Y N 19 
P8O C16 N17 DOUB Y N 20 
P8O N15 C14 SING Y N 21 
P8O N17 C19 SING Y N 22 
P8O C14 C19 DOUB Y N 23 
P8O C14 N13 SING Y N 24 
P8O C19 N20 SING Y N 25 
P8O C8  C7  DOUB Y N 26 
P8O C8  C9  SING Y N 27 
P8O C7  N6  SING Y N 28 
P8O C9  C10 DOUB Y N 29 
P8O N13 C12 DOUB Y N 30 
P8O N20 C21 DOUB Y N 31 
P8O C12 C21 SING Y N 32 
P8O C12 S11 SING N N 33 
P8O N6  C5  DOUB Y N 34 
P8O C10 C5  SING Y N 35 
P8O C10 S11 SING N N 36 
P8O C5  C2  SING N N 37 
P8O C2  F3  SING N N 38 
P8O C2  F4  SING N N 39 
P8O C2  F1  SING N N 40 
P8O C7  H1  SING N N 41 
P8O C8  H2  SING N N 42 
P8O C21 H3  SING N N 43 
P8O C23 H4  SING N N 44 
P8O C23 H5  SING N N 45 
P8O C24 H6  SING N N 46 
P8O C24 H7  SING N N 47 
P8O C30 H8  SING N N 48 
P8O C31 H9  SING N N 49 
P8O C33 H10 SING N N 50 
P8O C36 H11 SING N N 51 
P8O C36 H12 SING N N 52 
P8O C37 H13 SING N N 53 
P8O C37 H14 SING N N 54 
P8O C9  H15 SING N N 55 
P8O N15 H16 SING N N 56 
P8O C26 H18 SING N N 57 
P8O C26 H19 SING N N 58 
P8O C28 H20 SING N N 59 
P8O C29 H21 SING N N 60 
P8O N35 H22 SING N N 61 
P8O N35 H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P8O InChI            InChI                1.06    "InChI=1S/C24H22F3N7S/c25-24(26,27)19-16(6-3-9-29-19)35-17-13-30-20-21(31-17)33-22(32-20)34-10-7-23(8-11-34)12-14-4-1-2-5-15(14)18(23)28/h1-6,9,13,18H,7-8,10-12,28H2,(H,30,31,32,33)/t18-/m1/s1" 
P8O InChIKey         InChI                1.06    REEKVEYVOMDHAS-GOSISDBHSA-N                                                                                                                                                                       
P8O SMILES_CANONICAL CACTVS               3.385   "N[C@@H]1c2ccccc2CC13CCN(CC3)c4[nH]c5nc(Sc6cccnc6C(F)(F)F)cnc5n4"                                                                                                                                 
P8O SMILES           CACTVS               3.385   "N[CH]1c2ccccc2CC13CCN(CC3)c4[nH]c5nc(Sc6cccnc6C(F)(F)F)cnc5n4"                                                                                                                                   
P8O SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC3([C@@H]2N)CCN(CC3)c4[nH]c5c(n4)ncc(n5)Sc6cccnc6C(F)(F)F"                                                                                                                           
P8O SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC3(C2N)CCN(CC3)c4[nH]c5c(n4)ncc(n5)Sc6cccnc6C(F)(F)F"                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           P8O 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{S})-1'-[5-[2-(trifluoromethyl)pyridin-3-yl]sulfanyl-3~{H}-imidazo[4,5-b]pyrazin-2-yl]spiro[1,3-dihydroindene-2,4'-piperidine]-1-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P8O "Create component" 2022-10-03 PDBE 
P8O "Initial release"  2023-01-18 RCSB 
# 
