data_LVO
#

_chem_comp.id                                   LVO
_chem_comp.name                                 "5-acetamido-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C21 H36 N4 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic
acid; Laninamivir octanoate
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-09-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.533
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LVO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3TI4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LVO  
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic
acid
;
  PDB  ?  
2  LVO  "Laninamivir octanoate"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LVO  C2    CAA   C  0  1  N  N  N  29.567  13.378  -22.779  -3.299  -2.180  -0.168  C2    LVO   1  
LVO  C3    CAB   C  0  1  N  N  N  31.004  13.647  -22.532  -4.472  -1.635   0.117  C3    LVO   2  
LVO  C4    CAC   C  0  1  N  N  S  31.329  14.513  -21.288  -4.622  -0.174   0.446  C4    LVO   3  
LVO  C5    CAD   C  0  1  N  N  R  30.186  14.558  -20.255  -3.376   0.584  -0.025  C5    LVO   4  
LVO  C6    CAE   C  0  1  N  N  R  28.771  14.523  -20.881  -2.136  -0.191   0.440  C6    LVO   5  
LVO  O6    OAF   O  0  1  N  N  N  28.637  13.518  -21.821  -2.143  -1.473  -0.195  O6    LVO   6  
LVO  C1    CAG   C  0  1  N  N  N  29.187  12.506  -23.929  -3.247  -3.622  -0.464  C1    LVO   7  
LVO  O1B   OAH   O  0  1  N  N  N  30.180  11.966  -24.648  -2.070  -4.208  -0.758  O1B   LVO   8  
LVO  O1A   OAI   O  0  1  N  N  N  28.067  12.412  -24.174  -4.266  -4.284  -0.442  O1A   LVO   9  
LVO  C7    CAJ   C  0  1  N  N  R  27.716  14.379  -19.832  -0.872   0.573   0.045  C7    LVO  10  
LVO  C8    CAK   C  0  1  N  N  R  26.408  14.293  -20.538   0.361  -0.262   0.399  C8    LVO  11  
LVO  C9    CAL   C  0  1  N  N  N  25.363  13.843  -19.536   1.626   0.554   0.124  C9    LVO  12  
LVO  O9    OAM   O  0  1  N  N  N  24.430  12.930  -20.016   2.795  -0.284   0.323  O9    LVO  13  
LVO  CAN   CAN   C  0  1  N  N  N  24.625  11.664  -20.077   3.994   0.285   0.120  CAN   LVO  14  
LVO  OAV   OAV   O  0  1  N  N  N  24.868  10.964  -19.102   4.064   1.444  -0.212  OAV   LVO  15  
LVO  O7    OAW   O  0  1  N  N  N  27.946  13.228  -19.119  -0.888   0.826  -1.362  O7    LVO  16  
LVO  C13   CAX   C  0  1  N  N  N  27.653  13.374  -17.809  -0.537   2.165  -1.716  C13   LVO  17  
LVO  O8    OAY   O  0  1  N  N  N  26.083  15.443  -21.158   0.314  -0.616   1.783  O8    LVO  18  
LVO  N4    NAZ   N  0  1  N  N  N  32.656  14.355  -20.730  -5.805   0.361  -0.232  N4    LVO  19  
LVO  C12   CBA   C  0  1  N  N  N  33.440  15.388  -20.177  -7.045   0.238   0.350  C12   LVO  20  
LVO  N13   NBB   N  0  1  N  N  N  34.522  15.032  -19.559  -8.155   0.740  -0.287  N13   LVO  21  
LVO  N12   NBC   N  0  1  N  N  N  33.171  16.608  -20.436  -7.167  -0.353   1.505  N12   LVO  22  
LVO  C10   CBD   C  0  1  N  N  N  30.980  15.319  -18.060  -4.041   2.928  -0.041  C10   LVO  23  
LVO  C11   CBE   C  0  1  N  N  N  31.215  16.587  -17.325  -4.031   4.311   0.559  C11   LVO  24  
LVO  O10   OBF   O  0  1  N  N  N  31.240  14.306  -17.625  -4.656   2.716  -1.065  O10   LVO  25  
LVO  N5    NBG   N  0  1  N  N  N  30.331  15.569  -19.280  -3.366   1.928   0.559  N5    LVO  26  
LVO  H3    HAB   H  0  1  N  N  N  31.778  13.263  -23.180  -5.353  -2.261   0.114  H3    LVO  27  
LVO  H4    HAC   H  0  1  N  N  N  31.385  15.534  -21.693  -4.735  -0.054   1.523  H4    LVO  28  
LVO  H5    HAD   H  0  1  N  N  N  30.286  13.610  -19.707  -3.379   0.656  -1.113  H5    LVO  29  
LVO  H6    HAE   H  0  1  N  N  N  28.637  15.487  -21.394  -2.166  -0.317   1.523  H6    LVO  30  
LVO  H7    HAJ   H  0  1  N  N  N  27.722  15.229  -19.134  -0.836   1.520   0.584  H7    LVO  31  
LVO  H8    HAK   H  0  1  N  N  N  26.471  13.553  -21.349   0.373  -1.167  -0.208  H8    LVO  32  
LVO  H91   H1AL  H  0  1  N  N  N  25.892  13.367  -18.697   1.608   0.915  -0.904  H91   LVO  33  
LVO  H92   H2AL  H  0  1  N  N  N  24.813  14.737  -19.207   1.666   1.403   0.807  H92   LVO  34  
LVO  C15   C15   C  0  1  N  N  N  24.549  10.984  -21.457   5.252  -0.523   0.308  C15   LVO  35  
LVO  H131  H1AX  H  0  0  N  N  N  27.852  12.430  -17.281  -1.248   2.858  -1.267  H131  LVO  36  
LVO  H132  H2AX  H  0  0  N  N  N  28.277  14.172  -17.381   0.466   2.386  -1.350  H132  LVO  37  
LVO  H133  H3AX  H  0  0  N  N  N  26.591  13.639  -17.698  -0.560   2.272  -2.800  H133  LVO  38  
LVO  HO8   HOAY  H  0  1  N  N  N  25.245  15.343  -21.593   0.301   0.142   2.383  HO8   LVO  39  
LVO  HN41  HNAZ  H  0  0  N  N  N  33.049  13.436  -20.738  -5.714   0.801  -1.092  HN41  LVO  40  
LVO  HN13  H1BB  H  0  0  N  N  N  35.182  15.724  -19.267  -8.064   1.181  -1.146  HN13  LVO  41  
LVO  HN14  H2BB  H  0  0  N  N  N  34.697  14.065  -19.374  -9.030   0.654   0.124  HN14  LVO  42  
LVO  HN12  HBC   H  0  0  N  N  N  33.885  17.227  -20.108  -8.042  -0.440   1.915  HN12  LVO  43  
LVO  H111  H1BE  H  0  0  N  N  N  31.660  16.366  -16.344  -4.626   4.981  -0.061  H111  LVO  44  
LVO  H112  H2BE  H  0  0  N  N  N  31.901  17.224  -17.903  -4.453   4.274   1.563  H112  LVO  45  
LVO  H113  H3BE  H  0  0  N  N  N  30.258  17.111  -17.184  -3.006   4.677   0.609  H113  LVO  46  
LVO  HN5   HNBG  H  0  1  N  N  N  29.964  16.481  -19.462  -2.874   2.098   1.377  HN5   LVO  47  
LVO  C16   C16   C  0  1  N  N  N  24.777   9.466  -21.580   6.470   0.356   0.016  C16   LVO  48  
LVO  C17   C17   C  0  1  N  N  N  24.701   8.786  -22.960   7.748  -0.465   0.207  C17   LVO  49  
LVO  C18   C18   C  0  1  N  N  N  24.928   7.268  -23.084   8.966   0.414  -0.085  C18   LVO  50  
LVO  C19   C19   C  0  1  N  N  N  24.853   6.588  -24.464  10.243  -0.406   0.105  C19   LVO  51  
LVO  C20   C20   C  0  1  N  N  N  25.080   5.070  -24.588  11.462   0.473  -0.186  C20   LVO  52  
LVO  C21   C21   C  0  1  N  N  N  25.004   4.390  -25.967  12.739  -0.347   0.004  C21   LVO  53  
LVO  HOB1  H22   H  0  0  N  N  N  29.816  11.495  -25.389  -2.086  -5.157  -0.945  HOB1  LVO  54  
LVO  H23   H23   H  0  1  N  N  N  23.533  11.172  -21.834   5.302  -0.885   1.335  H23   LVO  55  
LVO  H24   H24   H  0  1  N  N  N  25.324  11.460  -22.075   5.244  -1.372  -0.376  H24   LVO  56  
LVO  H25   H25   H  0  1  N  N  N  25.793   9.278  -21.203   6.420   0.717  -1.011  H25   LVO  57  
LVO  H26   H26   H  0  1  N  N  N  24.002   8.990  -20.962   6.478   1.204   0.700  H26   LVO  58  
LVO  H27   H27   H  0  1  N  N  N  23.685   8.974  -23.337   7.798  -0.826   1.234  H27   LVO  59  
LVO  H28   H28   H  0  1  N  N  N  25.477   9.262  -23.578   7.740  -1.313  -0.477  H28   LVO  60  
LVO  H29   H29   H  0  1  N  N  N  25.944   7.080  -22.706   8.916   0.775  -1.112  H29   LVO  61  
LVO  H30   H30   H  0  1  N  N  N  24.152   6.792  -22.467   8.974   1.263   0.599  H30   LVO  62  
LVO  H31   H31   H  0  1  N  N  N  23.837   6.776  -24.842  10.293  -0.767   1.133  H31   LVO  63  
LVO  H32   H32   H  0  1  N  N  N  25.629   7.064  -25.081  10.236  -1.255  -0.578  H32   LVO  64  
LVO  H33   H33   H  0  1  N  N  N  26.096   4.882  -24.211  11.411   0.834  -1.213  H33   LVO  65  
LVO  H34   H34   H  0  1  N  N  N  24.304   4.594  -23.970  11.469   1.321   0.498  H34   LVO  66  
LVO  H35   H35   H  0  1  N  N  N  25.192   3.312  -25.856  13.607   0.278  -0.203  H35   LVO  67  
LVO  H36   H36   H  0  1  N  N  N  24.004   4.545  -26.397  12.789  -0.709   1.031  H36   LVO  68  
LVO  H37   H37   H  0  1  N  N  N  25.762   4.827  -26.634  12.731  -1.196  -0.680  H37   LVO  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LVO  C2   C3    DOUB  N  N   1  
LVO  C2   O6    SING  N  N   2  
LVO  C3   C4    SING  N  N   3  
LVO  C3   H3    SING  N  N   4  
LVO  C4   N4    SING  N  N   5  
LVO  C4   C5    SING  N  N   6  
LVO  C4   H4    SING  N  N   7  
LVO  C5   N5    SING  N  N   8  
LVO  C5   H5    SING  N  N   9  
LVO  C6   C5    SING  N  N  10  
LVO  C6   C7    SING  N  N  11  
LVO  C6   H6    SING  N  N  12  
LVO  O6   C6    SING  N  N  13  
LVO  C1   C2    SING  N  N  14  
LVO  O1B  C1    SING  N  N  15  
LVO  O1A  C1    DOUB  N  N  16  
LVO  C7   O7    SING  N  N  17  
LVO  C7   H7    SING  N  N  18  
LVO  C8   C7    SING  N  N  19  
LVO  C8   C9    SING  N  N  20  
LVO  C8   H8    SING  N  N  21  
LVO  C9   H91   SING  N  N  22  
LVO  C9   H92   SING  N  N  23  
LVO  O9   C9    SING  N  N  24  
LVO  CAN  O9    SING  N  N  25  
LVO  CAN  OAV   DOUB  N  N  26  
LVO  CAN  C15   SING  N  N  27  
LVO  O7   C13   SING  N  N  28  
LVO  C13  H131  SING  N  N  29  
LVO  C13  H132  SING  N  N  30  
LVO  C13  H133  SING  N  N  31  
LVO  O8   C8    SING  N  N  32  
LVO  O8   HO8   SING  N  N  33  
LVO  N4   C12   SING  N  N  34  
LVO  N4   HN41  SING  N  N  35  
LVO  C12  N13   SING  N  N  36  
LVO  N13  HN13  SING  N  N  37  
LVO  N13  HN14  SING  N  N  38  
LVO  N12  C12   DOUB  N  N  39  
LVO  N12  HN12  SING  N  N  40  
LVO  C10  O10   DOUB  N  N  41  
LVO  C10  C11   SING  N  N  42  
LVO  C11  H111  SING  N  N  43  
LVO  C11  H112  SING  N  N  44  
LVO  C11  H113  SING  N  N  45  
LVO  N5   C10   SING  N  N  46  
LVO  N5   HN5   SING  N  N  47  
LVO  C15  C16   SING  N  N  48  
LVO  C16  C17   SING  N  N  49  
LVO  C17  C18   SING  N  N  50  
LVO  C18  C19   SING  N  N  51  
LVO  C19  C20   SING  N  N  52  
LVO  C20  C21   SING  N  N  53  
LVO  O1B  HOB1  SING  N  N  54  
LVO  C15  H23   SING  N  N  55  
LVO  C15  H24   SING  N  N  56  
LVO  C16  H25   SING  N  N  57  
LVO  C16  H26   SING  N  N  58  
LVO  C17  H27   SING  N  N  59  
LVO  C17  H28   SING  N  N  60  
LVO  C18  H29   SING  N  N  61  
LVO  C18  H30   SING  N  N  62  
LVO  C19  H31   SING  N  N  63  
LVO  C19  H32   SING  N  N  64  
LVO  C20  H33   SING  N  N  65  
LVO  C20  H34   SING  N  N  66  
LVO  C21  H35   SING  N  N  67  
LVO  C21  H36   SING  N  N  68  
LVO  C21  H37   SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LVO  SMILES            ACDLabs               12.01  "O=C(OCC(O)C(OC)C1OC(=CC(NC(=[N@H])N)C1NC(=O)C)C(=O)O)CCCCCCC"  
LVO  InChI             InChI                 1.03   "InChI=1S/C21H36N4O8/c1-4-5-6-7-8-9-16(28)32-11-14(27)18(31-3)19-17(24-12(2)26)13(25-21(22)23)10-15(33-19)20(29)30/h10,13-14,17-19,27H,4-9,11H2,1-3H3,(H,24,26)(H,29,30)(H4,22,23,25)/t13-,14+,17+,18+,19+/m0/s1"  
LVO  InChIKey          InChI                 1.03   UKTIJASCFRNWCB-RMIBSVFLSA-N  
LVO  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCCC(=O)OC[C@@H](O)[C@@H](OC)[C@@H]1OC(=C[C@H](NC(N)=N)[C@H]1NC(C)=O)C(O)=O"  
LVO  SMILES            CACTVS                3.370  "CCCCCCCC(=O)OC[CH](O)[CH](OC)[CH]1OC(=C[CH](NC(N)=N)[CH]1NC(C)=O)C(O)=O"  
LVO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "[H]/N=C(\N)/N[C@H]1C=C(O[C@H]([C@@H]1NC(=O)C)[C@@H]([C@@H](COC(=O)CCCCCCC)O)OC)C(=O)O"  
LVO  SMILES            "OpenEye OEToolkits"  1.7.2  "CCCCCCCC(=O)OCC(C(C1C(C(C=C(O1)C(=O)O)NC(=N)N)NC(=O)C)OC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LVO  "SYSTEMATIC NAME"  ACDLabs               12.01  
;5-(acetylamino)-2,6-anhydro-4-carbamimidamido-3,4,5-trideoxy-7-O-methyl-9-O-octanoyl-D-glycero-D-galacto-non-2-enonic
acid
;
  
LVO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  
;(2R,3R,4S)-3-acetamido-4-carbamimidamido-2-[(1R,2R)-1-methoxy-3-octanoyloxy-2-oxidanyl-propyl]-3,4-dihydro-2H-pyran-6-c
arboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
LVO  "CARBOHYDRATE ISOMER"                  D             PDB  ?  
LVO  "CARBOHYDRATE RING"                    dihydropyran  PDB  ?  
LVO  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose        PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LVO  "Create component"          2011-09-07  PDBJ  
LVO  "Other modification"        2020-07-03  RCSB  
LVO  "Modify name"               2020-07-17  RCSB  
LVO  "Modify synonyms"           2020-07-17  RCSB  
LVO  "Modify internal type"      2020-07-17  RCSB  
LVO  "Modify linking type"       2020-07-17  RCSB  
LVO  "Modify atom id"            2020-07-17  RCSB  
LVO  "Modify component atom id"  2020-07-17  RCSB  
##
