data_LMO
#

_chem_comp.id                                   LMO
_chem_comp.name                                 "dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside"
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C24 H46 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "DDMB; dodecyl melibioside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-21
_chem_comp.pdbx_modified_date                   2021-07-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       510.615
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L16
_chem_comp.pdbx_subcomponent_list               "XKJ GLA"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LMO  C13   C1   C  0  1  N  N  N  -27.572  47.862   -4.402    4.613  -0.460  -0.068  C6    XKJ   1  
LMO  C17   C2   C  0  1  N  N  S  -26.403  45.382   -7.201    4.972   3.367  -0.272  C3    XKJ   2  
LMO  C24   C3   C  0  1  N  N  N  -28.439  48.513  -10.594   -1.097   2.420   0.216  C24   XKJ   3  
LMO  C26   C4   C  0  1  N  N  N  -30.377  46.899  -11.330   -3.537   1.882   0.225  C26   XKJ   4  
LMO  C28   C5   C  0  1  N  N  N  -30.157  44.346  -11.878   -5.977   1.344   0.234  C28   XKJ   5  
LMO  C14   C12  C  0  1  N  N  R  -27.754  47.036   -5.743    4.288   0.976  -0.485  C5    XKJ   6  
LMO  C16   C13  C  0  1  N  N  S  -26.820  45.788   -5.756    5.337   1.926   0.099  C4    XKJ   7  
LMO  C18   C14  C  0  1  N  N  R  -27.118  47.615   -8.051    2.581   2.655  -0.351  C1    XKJ   8  
LMO  C19   C15  C  0  1  N  N  R  -25.929  46.628   -7.965    3.560   3.673   0.239  C2    XKJ   9  
LMO  C23   C16  C  0  1  N  N  N  -27.885  49.422   -9.461    0.256   2.073  -0.408  C23   XKJ  10  
LMO  C25   C17  C  0  1  N  N  N  -29.904  48.023  -10.378   -2.184   1.535  -0.399  C25   XKJ  11  
LMO  C27   C18  C  0  1  N  N  N  -29.479  45.627  -11.328   -4.624   0.998  -0.390  C27   XKJ  12  
LMO  C29   C19  C  0  1  N  N  N  -30.506  43.290  -10.800   -7.063   0.460  -0.380  C29   XKJ  13  
LMO  C30   C20  C  0  1  N  N  N  -29.293  42.422  -10.361   -8.417   0.806   0.244  C30   XKJ  14  
LMO  C31   C21  C  0  1  N  N  N  -29.008  41.174  -11.242   -9.503  -0.078  -0.371  C31   XKJ  15  
LMO  C32   C22  C  0  1  N  N  N  -30.252  40.325  -11.597  -10.857   0.269   0.253  C32   XKJ  16  
LMO  C33   C23  C  0  1  N  N  N  -31.140  39.990  -10.380  -11.943  -0.616  -0.362  C33   XKJ  17  
LMO  C34   C24  C  0  1  N  N  N  -30.358  39.452   -9.186  -13.297  -0.269   0.262  C34   XKJ  18  
LMO  O08   O3   O  0  1  N  N  N  -26.180  47.916   -4.037    3.703  -1.359  -0.707  O6    XKJ  19  
LMO  O15   O7   O  0  1  N  N  N  -27.546  47.987   -6.775    2.995   1.334   0.007  O5    XKJ  20  
LMO  O20   O8   O  0  1  N  N  N  -27.547  44.734   -5.190    6.622   1.606  -0.436  O4    XKJ  21  
LMO  O21   O9   O  0  1  N  N  N  -25.572  46.265   -9.263    3.181   4.990  -0.165  O2    XKJ  22  
LMO  O22   O10  O  0  1  N  N  N  -26.788  48.782   -8.780    1.271   2.899   0.166  O1    XKJ  23  
LMO  O35   O11  O  0  1  N  N  N  -25.300  44.526   -7.074    5.904   4.267   0.330  O3    XKJ  24  
LMO  C04   C9   C  0  1  N  N  S  -25.356  48.821   -4.755    3.921  -2.733  -0.383  C1    GLA  25  
LMO  C03   C8   C  0  1  N  N  R  -23.837  48.492   -4.591    3.069  -3.615  -1.300  C2    GLA  26  
LMO  C02   C7   C  0  1  N  N  S  -23.528  48.565   -3.070    1.588  -3.309  -1.059  C3    GLA  27  
LMO  C01   C6   C  0  1  N  N  R  -23.816  49.996   -2.549    1.267  -3.531   0.422  C4    GLA  28  
LMO  C06   C10  C  0  1  N  N  R  -25.274  50.403   -2.899    2.188  -2.653   1.273  C5    GLA  29  
LMO  C11   C11  C  0  1  N  N  N  -25.443  51.938   -2.771    1.915  -2.913   2.756  C6    GLA  30  
LMO  O10   O5   O  0  1  N  N  N  -23.677  47.182   -5.037    3.397  -3.343  -2.664  O2    GLA  31  
LMO  O09   O4   O  0  1  N  N  N  -22.163  48.300   -2.944    0.784  -4.179  -1.858  O3    GLA  32  
LMO  O07   O2   O  0  1  N  N  N  -22.898  50.847   -3.174    1.474  -4.905   0.755  O4    GLA  33  
LMO  O05   O1   O  0  1  N  N  N  -25.660  50.095   -4.226    3.550  -2.967   0.978  O5    GLA  34  
LMO  O12   O6   O  0  1  N  N  N  -26.629  52.105   -2.036    2.690  -2.012   3.549  O6    GLA  35  
LMO  H131  H1   H  0  0  N  N  N  -27.949  48.885   -4.551    5.633  -0.703  -0.365  H61   XKJ  36  
LMO  H132  H2   H  0  0  N  N  N  -28.141  47.376   -3.596    4.517  -0.554   1.014  H62   XKJ  37  
LMO  H171  H3   H  0  0  N  N  N  -27.248  44.908   -7.722    5.001   3.483  -1.356  H3    XKJ  38  
LMO  H241  H4   H  0  0  N  N  N  -27.790  47.628  -10.672   -1.055   2.249   1.292  H241  XKJ  39  
LMO  H242  H5   H  0  0  N  N  N  -28.402  49.079  -11.536   -1.329   3.467   0.023  H242  XKJ  40  
LMO  H262  H6   H  0  0  N  N  N  -30.398  47.302  -12.353   -3.495   1.711   1.301  H262  XKJ  41  
LMO  H261  H7   H  0  0  N  N  N  -31.393  46.602  -11.032   -3.769   2.929   0.032  H261  XKJ  42  
LMO  H281  H8   H  0  0  N  N  N  -31.088  44.641  -12.384   -5.935   1.174   1.310  H281  XKJ  43  
LMO  H282  H9   H  0  0  N  N  N  -29.475  43.882  -12.606   -6.208   2.392   0.041  H282  XKJ  44  
LMO  H141  H17  H  0  0  N  N  N  -28.794  46.679   -5.773    4.297   1.049  -1.573  H5    XKJ  45  
LMO  H161  H18  H  0  0  N  N  N  -25.916  46.010   -5.170    5.357   1.824   1.184  H4    XKJ  46  
LMO  H181  H19  H  0  0  N  N  N  -27.937  47.093   -8.568    2.567   2.750  -1.436  H1    XKJ  47  
LMO  H191  H20  H  0  0  N  N  N  -25.094  47.100   -7.426    3.545   3.605   1.327  H2    XKJ  48  
LMO  H232  H21  H  0  0  N  N  N  -27.535  50.369   -9.897    0.488   1.026  -0.215  H232  XKJ  49  
LMO  H231  H22  H  0  0  N  N  N  -28.688  49.626   -8.738    0.215   2.244  -1.484  H231  XKJ  50  
LMO  H252  H23  H  0  0  N  N  N  -30.573  48.885  -10.513   -2.225   1.706  -1.475  H252  XKJ  51  
LMO  H251  H24  H  0  0  N  N  N  -29.988  47.651   -9.346   -1.952   0.488  -0.206  H251  XKJ  52  
LMO  H271  H25  H  0  0  N  N  N  -29.168  45.430  -10.291   -4.665   1.168  -1.465  H271  XKJ  53  
LMO  H272  H26  H  0  0  N  N  N  -28.592  45.835  -11.944   -4.392  -0.050  -0.197  H272  XKJ  54  
LMO  H291  H27  H  0  0  N  N  N  -30.897  43.813   -9.915   -7.105   0.630  -1.456  H291  XKJ  55  
LMO  H292  H28  H  0  0  N  N  N  -31.282  42.623  -11.205   -6.832  -0.588  -0.187  H292  XKJ  56  
LMO  H302  H29  H  0  0  N  N  N  -29.478  42.076   -9.333   -8.375   0.636   1.319  H302  XKJ  57  
LMO  H301  H30  H  0  0  N  N  N  -28.397  43.060  -10.377   -8.648   1.854   0.051  H301  XKJ  58  
LMO  H312  H31  H  0  0  N  N  N  -28.298  40.530  -10.702   -9.545   0.093  -1.447  H312  XKJ  59  
LMO  H311  H32  H  0  0  N  N  N  -28.550  41.517  -12.181   -9.272  -1.125  -0.178  H311  XKJ  60  
LMO  H322  H33  H  0  0  N  N  N  -30.858  40.884  -12.326  -10.815   0.098   1.329  H322  XKJ  61  
LMO  H321  H34  H  0  0  N  N  N  -29.912  39.382  -12.049  -11.088   1.316   0.060  H321  XKJ  62  
LMO  H331  H35  H  0  0  N  N  N  -31.664  40.906  -10.069  -11.985  -0.445  -1.438  H331  XKJ  63  
LMO  H332  H36  H  0  0  N  N  N  -31.876  39.231  -10.684  -11.712  -1.663  -0.169  H332  XKJ  64  
LMO  H343  H37  H  0  0  N  N  N  -31.052  39.236   -8.360  -14.071  -0.899  -0.176  H343  XKJ  65  
LMO  H342  H38  H  0  0  N  N  N  -29.835  38.529   -9.476  -13.255  -0.440   1.338  H342  XKJ  66  
LMO  H341  H39  H  0  0  N  N  N  -29.623  40.203   -8.861  -13.528   0.778   0.069  H341  XKJ  67  
LMO  H201  H44  H  0  0  N  N  N  -27.809  44.967   -4.307    7.335   2.173  -0.112  HO4   XKJ  68  
LMO  H211  H45  H  0  0  N  N  N  -24.842  45.658   -9.233    2.295   5.249   0.121  HO2   XKJ  69  
LMO  H351  H46  H  0  0  N  N  N  -25.559  43.742   -6.604    5.733   5.199   0.137  HO3   XKJ  70  
LMO  H041  H13  H  0  0  N  N  N  -25.601  48.786   -5.827    4.974  -2.977  -0.520  H1    GLA  71  
LMO  H031  H12  H  0  0  N  N  N  -23.223  49.216   -5.147    3.265  -4.665  -1.081  H2    GLA  72  
LMO  H021  H11  H  0  0  N  N  N  -24.146  47.836   -2.526    1.380  -2.273  -1.326  H3    GLA  73  
LMO  H011  H10  H  0  0  N  N  N  -23.692  50.012   -1.456    0.228  -3.262   0.614  H4    GLA  74  
LMO  H061  H14  H  0  0  N  N  N  -25.952  49.917   -2.182    1.999  -1.603   1.048  H5    GLA  75  
LMO  H111  H15  H  0  0  N  N  N  -24.589  52.379   -2.236    0.855  -2.760   2.963  H61   GLA  76  
LMO  H112  H16  H  0  0  N  N  N  -25.533  52.403   -3.764    2.188  -3.940   3.001  H62   GLA  77  
LMO  H101  H42  H  0  0  N  N  N  -22.765  46.929   -4.958    4.322  -3.515  -2.889  HO2   GLA  78  
LMO  H091  H41  H  0  0  N  N  N  -21.917  48.332   -2.027    0.935  -4.091  -2.809  HO3   GLA  79  
LMO  H071  H40  H  0  0  N  N  N  -23.041  51.739   -2.880    0.924  -5.519   0.251  HO4   GLA  80  
LMO  H121  H43  H  0  0  N  N  N  -26.800  53.032   -1.916    2.566  -2.120   4.502  HO6   GLA  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LMO  C28  C27   SING  N  N   1  
LMO  C28  C29   SING  N  N   2  
LMO  C32  C31   SING  N  N   3  
LMO  C32  C33   SING  N  N   4  
LMO  C26  C27   SING  N  N   5  
LMO  C26  C25   SING  N  N   6  
LMO  C31  C30   SING  N  N   7  
LMO  C29  C30   SING  N  N   8  
LMO  C24  C25   SING  N  N   9  
LMO  C24  C23   SING  N  N  10  
LMO  C33  C34   SING  N  N  11  
LMO  C23  O22   SING  N  N  12  
LMO  O21  C19   SING  N  N  13  
LMO  O22  C18   SING  N  N  14  
LMO  C18  C19   SING  N  N  15  
LMO  C18  O15   SING  N  N  16  
LMO  C19  C17   SING  N  N  17  
LMO  C17  O35   SING  N  N  18  
LMO  C17  C16   SING  N  N  19  
LMO  O15  C14   SING  N  N  20  
LMO  C16  C14   SING  N  N  21  
LMO  C16  O20   SING  N  N  22  
LMO  C14  C13   SING  N  N  23  
LMO  O10  C03   SING  N  N  24  
LMO  C04  C03   SING  N  N  25  
LMO  C04  O05   SING  N  N  26  
LMO  C04  O08   SING  N  N  27  
LMO  C03  C02   SING  N  N  28  
LMO  C13  O08   SING  N  N  29  
LMO  O05  C06   SING  N  N  30  
LMO  O07  C01   SING  N  N  31  
LMO  C02  O09   SING  N  N  32  
LMO  C02  C01   SING  N  N  33  
LMO  C06  C11   SING  N  N  34  
LMO  C06  C01   SING  N  N  35  
LMO  C11  O12   SING  N  N  36  
LMO  C13  H131  SING  N  N  37  
LMO  C13  H132  SING  N  N  38  
LMO  C17  H171  SING  N  N  39  
LMO  C24  H241  SING  N  N  40  
LMO  C24  H242  SING  N  N  41  
LMO  C26  H262  SING  N  N  42  
LMO  C26  H261  SING  N  N  43  
LMO  C28  H281  SING  N  N  44  
LMO  C28  H282  SING  N  N  45  
LMO  C01  H011  SING  N  N  46  
LMO  C02  H021  SING  N  N  47  
LMO  C03  H031  SING  N  N  48  
LMO  C04  H041  SING  N  N  49  
LMO  C06  H061  SING  N  N  50  
LMO  C11  H111  SING  N  N  51  
LMO  C11  H112  SING  N  N  52  
LMO  C14  H141  SING  N  N  53  
LMO  C16  H161  SING  N  N  54  
LMO  C18  H181  SING  N  N  55  
LMO  C19  H191  SING  N  N  56  
LMO  C23  H232  SING  N  N  57  
LMO  C23  H231  SING  N  N  58  
LMO  C25  H252  SING  N  N  59  
LMO  C25  H251  SING  N  N  60  
LMO  C27  H271  SING  N  N  61  
LMO  C27  H272  SING  N  N  62  
LMO  C29  H291  SING  N  N  63  
LMO  C29  H292  SING  N  N  64  
LMO  C30  H302  SING  N  N  65  
LMO  C30  H301  SING  N  N  66  
LMO  C31  H312  SING  N  N  67  
LMO  C31  H311  SING  N  N  68  
LMO  C32  H322  SING  N  N  69  
LMO  C32  H321  SING  N  N  70  
LMO  C33  H331  SING  N  N  71  
LMO  C33  H332  SING  N  N  72  
LMO  C34  H343  SING  N  N  73  
LMO  C34  H342  SING  N  N  74  
LMO  C34  H341  SING  N  N  75  
LMO  O07  H071  SING  N  N  76  
LMO  O09  H091  SING  N  N  77  
LMO  O10  H101  SING  N  N  78  
LMO  O12  H121  SING  N  N  79  
LMO  O20  H201  SING  N  N  80  
LMO  O21  H211  SING  N  N  81  
LMO  O35  H351  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LMO  SMILES            ACDLabs               12.01  "C(OC1C(C(C(C(CO)O1)O)O)O)C2C(C(O)C(C(O2)OCCCCCCCCCCCC)O)O"  
LMO  InChI             InChI                 1.03   "InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(30)20(29)18(27)16(35-23)14-33-24-22(31)19(28)17(26)15(13-25)34-24/h15-31H,2-14H2,1H3/t15-,16-,17+,18-,19+,20+,21-,22-,23-,24+/m1/s1"  
LMO  InChIKey          InChI                 1.03   HBVAWIPMNSJELA-RWNQQKCBSA-N  
LMO  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCO[C@@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O"  
LMO  SMILES            CACTVS                3.385  "CCCCCCCCCCCCO[CH]1O[CH](CO[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
LMO  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O"  
LMO  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCOC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LMO  "SYSTEMATIC NAME"  ACDLabs               12.01  "dodecyl 6-O-alpha-D-galactopyranosyl-beta-D-glucopyranoside"  
LMO  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{S},5~{R},6~{R})-2-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-6-dodecoxy-3,4,5-tris(oxidanyl)oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol"  
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loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  LMO  DDMB                   AUTHOR  ?  
2  LMO  "dodecyl melibioside"  AUTHOR  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LMO  "Create component"  2020-12-21  RCSB  
LMO  "Initial release"   2021-08-04  RCSB  
##
